Wall clock time and date at job start Tue Mar 31 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47246 * 2 1 4 4 H 1.09001 * 109.46753 * 174.79767 * 3 2 1 5 5 C 1.53000 * 109.46842 * 294.79189 * 3 2 1 6 6 C 1.50701 * 109.47380 * 293.53054 * 5 3 2 7 7 O 1.21281 * 119.99763 * 353.76525 * 6 5 3 8 8 N 1.34774 * 120.00049 * 173.76770 * 6 5 3 9 9 C 1.47424 * 125.64891 * 359.68738 * 8 6 5 10 10 C 1.55126 * 104.72457 * 155.82028 * 9 8 6 11 11 C 1.55165 * 101.48619 * 37.29492 * 10 9 8 12 12 H 1.09001 * 110.71249 * 82.69629 * 11 10 9 13 13 N 1.46495 * 110.72211 * 205.97359 * 11 10 9 14 14 C 1.36938 * 119.99470 * 268.52243 * 13 11 10 15 15 H 1.08001 * 120.00482 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99714 * 180.02562 * 14 13 11 17 17 N 1.31625 * 120.00063 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00113 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47083 * 90.00209 * 18 16 14 20 20 H 1.48500 * 109.47121 * 210.00137 * 18 16 14 21 21 H 1.48501 * 109.47134 * 330.00315 * 18 16 14 22 22 C 1.47021 * 125.64811 * 179.97438 * 8 6 5 23 23 C 1.52993 * 109.47253 * 54.79529 * 3 2 1 24 24 C 1.53000 * 109.47357 * 60.00424 * 23 3 2 25 25 C 1.52998 * 109.46965 * 180.02562 * 23 3 2 26 26 H 1.09000 * 109.46760 * 302.19337 * 1 2 3 27 27 H 1.08998 * 109.47052 * 62.19029 * 1 2 3 28 28 H 1.08998 * 109.47020 * 182.19431 * 1 2 3 29 29 H 1.08999 * 109.47573 * 239.99103 * 2 1 3 30 30 H 1.09006 * 109.46830 * 119.99515 * 2 1 3 31 31 H 1.08996 * 109.46810 * 53.52861 * 5 3 2 32 32 H 1.08998 * 109.47044 * 173.52914 * 5 3 2 33 33 H 1.09004 * 110.36898 * 274.75025 * 9 8 6 34 34 H 1.09000 * 110.36375 * 37.06967 * 9 8 6 35 35 H 1.09001 * 111.19516 * 279.19477 * 10 9 8 36 36 H 1.08994 * 110.94222 * 155.29122 * 10 9 8 37 37 H 0.96989 * 120.00490 * 88.51943 * 13 11 10 38 38 H 0.96996 * 120.00114 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.88341 * 300.43835 * 22 8 6 40 40 H 1.09002 * 109.88535 * 61.45170 * 22 8 6 41 41 H 1.09001 * 109.47435 * 299.99820 * 23 3 2 42 42 H 1.09004 * 109.46579 * 299.99563 * 24 23 3 43 43 H 1.08998 * 109.47109 * 59.99801 * 24 23 3 44 44 H 1.08995 * 109.47166 * 180.02562 * 24 23 3 45 45 H 1.09003 * 109.47796 * 59.99863 * 25 23 3 46 46 H 1.09005 * 109.47677 * 180.02562 * 25 23 3 47 47 H 1.09007 * 109.47365 * 300.00109 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 0.0932 5 6 1.6398 2.1249 -1.3096 6 6 2.3702 1.4769 -2.4575 7 8 3.2185 0.6378 -2.2401 8 7 2.0809 1.8300 -3.7256 9 6 1.0729 2.8263 -4.1314 10 6 1.5393 3.3123 -5.5288 11 6 2.0852 1.9979 -6.1468 12 1 1.2741 1.4041 -6.5683 13 7 3.1011 2.2855 -7.1624 14 6 2.7358 2.4308 -8.4741 15 1 1.6989 2.3331 -8.7600 16 6 3.6984 2.7028 -9.4366 17 7 3.3473 2.8430 -10.6973 18 14 5.4919 2.8711 -8.9423 19 1 6.1520 1.5429 -9.0144 20 1 6.1735 3.8134 -9.8657 21 1 5.5760 3.3909 -7.5537 22 6 2.7141 1.2810 -4.9335 23 6 1.4261 2.2005 1.1786 24 6 1.8265 1.5181 2.4882 25 6 1.9356 3.6431 1.1782 26 1 -0.3633 0.5475 0.8697 27 1 -0.3633 0.4794 -0.9090 28 1 -0.3633 -1.0269 0.0393 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5649 2.0225 -1.4588 32 1 1.9010 3.1821 -1.2630 33 1 0.0878 2.3642 -4.1972 34 1 1.0565 3.6578 -3.4269 35 1 2.3274 4.0605 -5.4430 36 1 0.6997 3.6970 -6.1076 37 1 4.0323 2.3729 -6.9058 38 1 4.0199 3.0334 -11.3698 39 1 3.7875 1.4686 -4.9073 40 1 2.5268 0.2090 -4.9958 41 1 0.3400 2.1992 1.0854 42 1 1.4630 0.4905 2.4882 43 1 2.9125 1.5196 2.5813 44 1 1.3887 2.0579 3.3278 45 1 1.6501 4.1292 0.2452 46 1 1.4986 4.1832 2.0181 47 1 3.0217 3.6449 1.2711 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187209265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:22 Heat of formation + Delta-G solvation = -42.976280 kcal Electronic energy + Delta-G solvation = -23046.150569 eV Core-core repulsion = 19842.452862 eV Total energy + Delta-G solvation = -3203.697706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.20789 -38.38554 -36.99164 -34.27471 -32.61286 -31.73968 -30.43846 -29.70894 -28.03745 -27.17780 -25.27756 -23.37327 -22.67691 -22.34975 -20.24167 -19.38443 -18.63652 -17.78814 -16.94527 -16.40024 -15.55079 -15.48897 -14.96192 -14.53846 -14.29095 -13.95859 -13.83219 -13.30393 -13.20314 -13.02452 -12.62769 -12.59314 -12.46196 -12.43833 -12.12916 -11.94871 -11.82759 -11.75566 -11.49807 -11.47699 -11.04668 -10.92125 -10.75319 -10.59654 -10.54762 -10.41781 -10.37422 -10.12455 -9.67530 -9.57877 -9.01690 -8.45729 -7.37674 -5.84474 -3.21953 2.76749 3.11538 3.34608 3.38216 3.42829 4.42268 4.53242 4.53487 4.61320 4.80365 4.85617 4.93096 5.11234 5.15765 5.17907 5.22134 5.31085 5.33926 5.40247 5.41293 5.45123 5.48228 5.51932 5.61099 5.65303 5.69456 5.81356 5.83387 5.84274 5.86364 5.87824 5.97308 6.03014 6.13485 6.16090 6.25312 6.29913 6.39269 6.48130 6.50321 6.75959 7.69148 7.89598 8.31190 8.34069 9.10714 9.83317 10.01536 11.33239 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.003281 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.846363 B = 8532.227584 C = 8616.939340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.066 4.066 4 H 0.079 0.921 5 C -0.137 4.137 6 C 0.525 3.475 7 O -0.545 6.545 8 N -0.616 5.616 9 C 0.098 3.902 10 C -0.155 4.155 11 C 0.177 3.823 12 H 0.075 0.925 13 N -0.739 5.739 14 C -0.250 4.250 15 H 0.093 0.907 16 C 0.009 3.991 17 N -0.930 5.930 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.097 3.903 23 C -0.095 4.095 24 C -0.148 4.148 25 C -0.152 4.152 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 -0.101 24.833 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C -0.085 4.085 4 H 0.097 0.903 5 C -0.177 4.177 6 C 0.314 3.686 7 O -0.423 6.423 8 N -0.350 5.350 9 C -0.025 4.025 10 C -0.196 4.196 11 C 0.065 3.935 12 H 0.093 0.907 13 N -0.381 5.381 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.577 5.577 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.027 4.027 23 C -0.113 4.113 24 C -0.205 4.205 25 C -0.210 4.210 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.758 -0.568 24.764 25.676 hybrid contribution 1.272 0.308 0.097 1.313 sum -5.486 -0.260 24.861 25.460 Atomic orbital electron populations 1.21918 0.96467 1.01375 1.01602 1.21624 0.95345 0.96259 1.02913 1.20968 1.01079 0.94625 0.91849 0.90275 1.21854 1.01407 1.01190 0.93215 1.20365 0.83169 0.82492 0.82595 1.90671 1.33932 1.33555 1.84112 1.48545 1.39500 1.41535 1.05413 1.22441 0.91573 0.90968 0.97516 1.23570 1.01850 1.00688 0.93457 1.21158 0.92166 0.92865 0.87263 0.90665 1.42715 1.04625 1.86144 1.04625 1.19045 0.95651 1.41746 0.81483 0.88971 1.24669 0.97537 1.01409 0.95146 1.69696 1.33070 1.54938 1.00025 0.86578 0.86609 0.77915 0.77585 1.20894 1.21604 1.20305 1.22320 0.97947 0.98243 0.84141 1.21215 1.00524 0.94814 0.94745 1.21866 1.01503 1.00642 0.96483 1.21944 1.01375 0.96035 1.01603 0.92479 0.92873 0.93101 0.90647 0.92010 0.89045 0.88772 0.91458 0.91259 0.90788 0.90101 0.80328 0.92909 0.91648 0.91479 0.90783 0.92304 0.92718 0.92984 0.92417 0.92829 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.21 37.16 0.34 -0.99 16 2 C -0.12 -1.27 5.01 -26.73 -0.13 -1.40 16 3 C -0.07 -0.65 1.39 -90.62 -0.13 -0.78 16 4 H 0.08 0.93 7.81 -51.93 -0.41 0.53 16 5 C -0.14 -1.40 3.80 -27.88 -0.11 -1.50 16 6 C 0.52 7.58 7.40 -10.99 -0.08 7.49 16 7 O -0.54 -9.73 14.67 5.56 0.08 -9.64 16 8 N -0.62 -8.94 3.32 -170.38 -0.57 -9.51 16 9 C 0.10 1.18 6.68 -2.41 -0.02 1.16 16 10 C -0.15 -2.35 6.78 -24.46 -0.17 -2.52 16 11 C 0.18 3.21 3.61 -66.09 -0.24 2.97 16 12 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 13 N -0.74 -16.89 5.03 -51.65 -0.26 -17.15 16 14 C -0.25 -6.79 10.44 -15.06 -0.16 -6.95 16 15 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 18 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 22 C 0.10 1.64 6.62 -3.06 -0.02 1.62 16 23 C -0.09 -0.73 2.01 -90.62 -0.18 -0.91 16 24 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 25 C -0.15 -1.11 8.85 37.16 0.33 -0.78 16 26 H 0.06 0.42 6.21 -51.93 -0.32 0.10 16 27 H 0.05 0.46 6.54 -51.93 -0.34 0.12 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.99 6.24 -51.93 -0.32 0.66 16 30 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 31 H 0.09 0.80 6.31 -51.93 -0.33 0.47 16 32 H 0.09 0.85 6.06 -51.93 -0.31 0.54 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.36 8.33 5.42 -40.82 -0.22 8.11 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.07 1.20 7.72 -51.93 -0.40 0.80 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.53 6.29 -51.93 -0.33 0.21 16 42 H 0.06 0.42 6.55 -51.93 -0.34 0.08 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.41 6.29 -51.93 -0.33 0.08 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -31.45 355.17 -7.87 -39.31 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.21 Total: 5.53 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.32 Total: -3.17 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.05 Total: -54.53 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.45 -7.87 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187209265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.663 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds