Wall clock time and date at job start Tue Mar 31 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47356 * 2 1 4 4 H 1.09006 * 109.46661 * 304.99667 * 3 2 1 5 5 C 1.53001 * 109.47390 * 64.99365 * 3 2 1 6 6 C 1.52996 * 109.47357 * 185.00054 * 3 2 1 7 7 C 1.52996 * 109.47416 * 174.99666 * 6 3 2 8 8 C 1.50701 * 109.47398 * 179.97438 * 7 6 3 9 9 O 1.21279 * 119.99919 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00038 * 180.02562 * 8 7 6 11 11 C 1.47016 * 125.65157 * 0.03619 * 10 8 7 12 12 C 1.54317 * 107.27535 * 181.02692 * 11 10 8 13 13 C 1.55158 * 102.94164 * 22.19422 * 12 11 10 14 14 H 1.09003 * 111.03693 * 82.58592 * 13 12 11 15 15 N 1.46501 * 111.00799 * 206.42112 * 13 12 11 16 16 C 1.46508 * 119.99474 * 52.19524 * 15 13 12 17 17 C 1.36931 * 120.00451 * 232.19743 * 15 13 12 18 18 H 1.08004 * 119.99873 * 339.92965 * 17 15 13 19 19 C 1.38808 * 119.99924 * 159.65648 * 17 15 13 20 20 N 1.31617 * 120.00285 * 347.73679 * 19 17 15 21 21 Si 1.86808 * 119.99728 * 167.73367 * 19 17 15 22 22 H 1.48499 * 109.46786 * 90.00210 * 21 19 17 23 23 H 1.48499 * 109.47013 * 210.00290 * 21 19 17 24 24 H 1.48499 * 109.47172 * 330.00006 * 21 19 17 25 25 C 1.47430 * 125.64821 * 180.02562 * 10 8 7 26 26 H 1.08997 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47047 * 300.00546 * 1 2 3 28 28 H 1.09002 * 109.46446 * 60.00245 * 1 2 3 29 29 H 1.08997 * 109.47491 * 239.99567 * 2 1 3 30 30 H 1.09003 * 109.46969 * 119.99786 * 2 1 3 31 31 H 1.09000 * 109.46615 * 60.00322 * 5 3 2 32 32 H 1.08997 * 109.46971 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.47325 * 300.00445 * 5 3 2 34 34 H 1.09002 * 109.47348 * 54.99564 * 6 3 2 35 35 H 1.08999 * 109.46844 * 294.99745 * 6 3 2 36 36 H 1.09002 * 109.46945 * 59.99652 * 7 6 3 37 37 H 1.08999 * 109.47179 * 299.99874 * 7 6 3 38 38 H 1.09003 * 109.88010 * 300.44799 * 11 10 8 39 39 H 1.08999 * 109.88127 * 61.45478 * 11 10 8 40 40 H 1.08993 * 110.72678 * 263.83113 * 12 11 10 41 41 H 1.09006 * 110.72257 * 140.55240 * 12 11 10 42 42 H 1.08999 * 109.46999 * 264.84831 * 16 15 13 43 43 H 1.08999 * 109.47275 * 24.85102 * 16 15 13 44 44 H 1.08997 * 109.46862 * 144.85302 * 16 15 13 45 45 H 0.97004 * 120.00073 * 179.97438 * 20 19 17 46 46 H 1.08999 * 110.36430 * 37.05506 * 25 10 8 47 47 H 1.09002 * 110.45561 * 274.79154 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 6 4.0646 2.8849 -0.2512 8 6 5.5665 2.8867 -0.3744 9 8 6.1772 1.8390 -0.3625 10 7 6.2312 4.0528 -0.4968 11 6 5.6192 5.3892 -0.5237 12 6 6.7604 6.4123 -0.7036 13 6 7.8936 5.5613 -1.3354 14 1 7.7562 5.4643 -2.4123 15 7 9.2095 6.1259 -1.0255 16 6 9.5710 6.4217 0.3631 17 6 10.1013 6.3773 -2.0337 18 1 9.9919 5.8823 -2.9874 19 6 11.1428 7.2724 -1.8318 20 7 11.1412 8.0564 -0.7746 21 14 12.5468 7.3643 -3.0607 22 1 12.2214 8.3634 -4.1101 23 1 13.7919 7.7697 -2.3603 24 1 12.7431 6.0330 -3.6884 25 6 7.6925 4.1994 -0.6256 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5876 2.1491 32 1 1.9982 3.1544 1.3070 33 1 0.5489 2.1254 1.3968 34 1 3.8571 0.8799 -1.0113 35 1 4.0029 0.9836 0.7597 36 1 3.7723 3.4493 0.6343 37 1 3.6265 3.3456 -1.1366 38 1 4.9220 5.4609 -1.3585 39 1 5.0953 5.5759 0.4137 40 1 7.0724 6.8156 0.2597 41 1 6.4577 7.2131 -1.3784 42 1 9.3620 7.4697 0.5776 43 1 8.9874 5.7903 1.0329 44 1 10.6328 6.2252 0.5117 45 1 11.8692 8.6817 -0.6333 46 1 8.1028 3.3915 -1.2314 47 1 8.1624 4.2112 0.3578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193016428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:41 Heat of formation + Delta-G solvation = -35.415425 kcal Electronic energy + Delta-G solvation = -22612.599859 eV Core-core repulsion = 19409.230016 eV Total energy + Delta-G solvation = -3203.369843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.83989 -37.83816 -36.95782 -34.80649 -32.50106 -31.55536 -29.78782 -29.09847 -27.82757 -26.11186 -25.89491 -23.75652 -22.40575 -22.03160 -20.07174 -19.31128 -18.82019 -17.07360 -16.86234 -16.10860 -15.52976 -15.38631 -14.80330 -14.40516 -14.28494 -13.76015 -13.54361 -13.34830 -13.28299 -12.77314 -12.62017 -12.48601 -12.33735 -12.18406 -11.94571 -11.81819 -11.78307 -11.34603 -11.11508 -10.93865 -10.79844 -10.77107 -10.71522 -10.61802 -10.49050 -10.47880 -10.26536 -9.89689 -9.86983 -9.54904 -8.60322 -8.31201 -6.84921 -5.77119 -3.22366 2.86637 3.24932 3.36355 3.43276 3.45880 4.44412 4.47758 4.59254 4.65097 4.86724 5.01936 5.03006 5.12264 5.18352 5.27387 5.32221 5.33010 5.37848 5.45722 5.53517 5.56150 5.61867 5.70147 5.76512 5.79023 5.83359 5.86810 5.88449 5.92722 6.02258 6.05551 6.21763 6.27632 6.31226 6.38864 6.55700 6.64805 6.76546 6.86778 7.37215 7.68045 7.77839 7.83673 8.32435 8.42017 9.18117 9.80505 10.27795 11.27673 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044971 B = 0.002806 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.469653 B = 9975.501892 C =10208.791867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.136 4.136 8 C 0.522 3.478 9 O -0.550 6.550 10 N -0.615 5.615 11 C 0.104 3.896 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.587 5.587 16 C 0.162 3.838 17 C -0.258 4.258 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.084 3.916 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.031 0.969 43 H -0.001 1.001 44 H 0.047 0.953 45 H 0.253 0.747 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 -8.928 2.902 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.176 4.176 8 C 0.311 3.689 9 O -0.428 6.428 10 N -0.349 5.349 11 C -0.020 4.020 12 C -0.191 4.191 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.307 5.307 16 C 0.017 3.983 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.196 4.196 20 N -0.553 5.553 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.040 4.040 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.419 -9.407 2.980 21.783 hybrid contribution 0.768 0.346 -0.548 1.005 sum -18.651 -9.061 2.432 20.878 Atomic orbital electron populations 1.21825 0.96050 1.01396 1.01811 1.21566 0.95652 0.96390 1.02166 1.21204 0.95346 0.96221 0.98411 0.91196 1.21952 1.01113 1.00565 0.97243 1.21397 0.93970 0.94921 1.03406 1.21703 0.92097 0.99820 1.03964 1.20371 0.89838 0.82343 0.76382 1.90681 1.70133 1.30844 1.51163 1.48551 1.08889 1.05783 1.71678 1.22040 0.96809 0.82555 1.00602 1.23208 0.95586 0.97560 1.02796 1.21393 0.85686 0.89465 0.97195 0.90452 1.43847 1.10388 1.72627 1.03882 1.20823 0.98029 0.97006 0.82417 1.19240 1.05459 1.19672 0.94345 0.91155 1.24986 1.00205 0.96423 0.97984 1.70084 1.32545 1.23788 1.28851 0.86221 0.81882 0.77810 0.80402 1.21410 1.21557 1.20492 1.23001 0.78733 1.00806 1.01506 0.93003 0.92543 0.92853 0.91950 0.91968 0.92666 0.92514 0.92623 0.91246 0.91244 0.89071 0.89246 0.91922 0.92143 0.90500 0.90510 0.95024 0.98223 0.93473 0.93681 0.91100 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.07 16 3 C -0.09 -0.75 2.39 -90.62 -0.22 -0.97 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.12 8.70 37.16 0.32 -0.80 16 6 C -0.10 -1.04 3.97 -26.73 -0.11 -1.15 16 7 C -0.14 -1.48 4.65 -27.88 -0.13 -1.61 16 8 C 0.52 8.21 7.85 -10.99 -0.09 8.12 16 9 O -0.55 -10.75 16.24 5.56 0.09 -10.66 16 10 N -0.61 -9.81 3.33 -170.54 -0.57 -10.37 16 11 C 0.10 1.37 6.49 -3.07 -0.02 1.35 16 12 C -0.15 -2.48 6.50 -24.90 -0.16 -2.64 16 13 C 0.17 3.44 3.53 -65.79 -0.23 3.21 16 14 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 15 N -0.59 -14.31 2.96 -171.04 -0.51 -14.82 16 16 C 0.16 3.88 7.55 59.85 0.45 4.33 16 17 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 18 H 0.07 1.85 7.84 -52.48 -0.41 1.44 16 19 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 20 N -0.91 -25.93 10.51 55.49 0.58 -25.35 16 21 Si 0.91 21.64 29.57 -169.99 -5.03 16.61 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.08 1.58 6.47 -2.54 -0.02 1.57 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 33 H 0.05 0.37 6.57 -51.93 -0.34 0.02 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.09 0.86 6.57 -51.93 -0.34 0.52 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 43 H 0.00 -0.01 6.38 -51.93 -0.33 -0.35 16 44 H 0.05 1.24 7.14 -51.93 -0.37 0.87 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 47 H 0.07 1.33 6.43 -51.93 -0.33 0.99 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -30.54 362.22 -8.77 -39.32 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.59 Total: -2.76 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.21 Total: 2.58 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.49 Total: -50.54 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.54 -8.77 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193016428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.901 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds