Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47438 * 2 1 4 4 H 1.08997 * 109.47161 * 54.99838 * 3 2 1 5 5 C 1.52992 * 109.47092 * 294.99680 * 3 2 1 6 6 C 1.52999 * 109.46964 * 174.99878 * 3 2 1 7 7 C 1.52999 * 109.47165 * 184.99700 * 6 3 2 8 8 C 1.50702 * 109.47511 * 179.97438 * 7 6 3 9 9 O 1.21281 * 119.99597 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.47021 * 125.64885 * 0.04586 * 10 8 7 12 12 C 1.54322 * 107.26768 * 181.02116 * 11 10 8 13 13 C 1.55157 * 102.94599 * 22.19720 * 12 11 10 14 14 H 1.08993 * 111.04163 * 82.57985 * 13 12 11 15 15 N 1.46501 * 111.00279 * 206.42573 * 13 12 11 16 16 C 1.46499 * 120.00304 * 52.19003 * 15 13 12 17 17 C 1.36934 * 119.99536 * 232.19453 * 15 13 12 18 18 H 1.08002 * 119.99937 * 339.92821 * 17 15 13 19 19 C 1.38815 * 119.99940 * 159.66111 * 17 15 13 20 20 N 1.31615 * 119.99738 * 347.72817 * 19 17 15 21 21 Si 1.86804 * 119.99972 * 167.72808 * 19 17 15 22 22 H 1.48505 * 109.46966 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47111 * 119.99904 * 21 19 17 24 24 H 1.48495 * 109.47090 * 239.99982 * 21 19 17 25 25 C 1.47422 * 125.64527 * 180.02562 * 10 8 7 26 26 H 1.08996 * 109.46810 * 59.99672 * 1 2 3 27 27 H 1.08995 * 109.47374 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47079 * 300.00263 * 1 2 3 29 29 H 1.08998 * 109.47278 * 239.99549 * 2 1 3 30 30 H 1.09003 * 109.46711 * 119.99969 * 2 1 3 31 31 H 1.08995 * 109.47213 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47683 * 300.00704 * 5 3 2 33 33 H 1.09001 * 109.47156 * 59.99881 * 5 3 2 34 34 H 1.08998 * 109.47091 * 65.00061 * 6 3 2 35 35 H 1.09006 * 109.47311 * 304.99954 * 6 3 2 36 36 H 1.09007 * 109.46815 * 60.00494 * 7 6 3 37 37 H 1.08999 * 109.47499 * 300.00550 * 7 6 3 38 38 H 1.09002 * 109.88121 * 300.43621 * 11 10 8 39 39 H 1.08999 * 109.88126 * 61.45091 * 11 10 8 40 40 H 1.09001 * 110.72218 * 263.82737 * 12 11 10 41 41 H 1.09002 * 110.71411 * 140.55629 * 12 11 10 42 42 H 1.09004 * 109.47025 * 264.85355 * 16 15 13 43 43 H 1.08997 * 109.47041 * 24.85029 * 16 15 13 44 44 H 1.08997 * 109.47013 * 144.85445 * 16 15 13 45 45 H 0.97000 * 119.99431 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.36794 * 37.07390 * 25 10 8 47 47 H 1.09002 * 110.46109 * 274.79438 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 6 4.0647 2.8848 0.2511 8 6 5.5665 2.8865 0.3756 9 8 6.1771 1.8386 0.3646 10 7 6.2312 4.0525 0.4991 11 6 5.6190 5.3889 0.5278 12 6 6.7646 6.4148 0.6561 13 6 7.9937 5.6320 0.1233 14 1 8.0346 5.6617 -0.9654 15 7 9.2359 6.1442 0.7070 16 6 9.3634 6.2737 2.1607 17 6 10.2778 6.5022 -0.1062 18 1 10.3300 6.1222 -1.1158 19 6 11.2640 7.3579 0.3652 20 7 11.0824 8.0140 1.4916 21 14 12.8486 7.5780 -0.5992 22 1 12.8054 6.7355 -1.8214 23 1 12.9983 9.0038 -0.9865 24 1 14.0014 7.1702 0.2433 25 6 7.6924 4.1989 0.6282 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.9984 3.1542 -1.3071 32 1 2.0699 1.5874 -2.1492 33 1 0.5491 2.1252 -1.3970 34 1 4.0030 0.9834 -0.7596 35 1 3.8571 0.8798 1.0114 36 1 3.6266 3.3456 1.1365 37 1 3.7725 3.4491 -0.6345 38 1 5.0667 5.5635 -0.3955 39 1 4.9475 5.4707 1.3825 40 1 6.9114 6.7008 1.6977 41 1 6.5683 7.2912 0.0385 42 1 9.1121 7.2918 2.4583 43 1 8.6843 5.5745 2.6487 44 1 10.3885 6.0511 2.4568 45 1 11.7717 8.6116 1.8211 46 1 8.2037 3.4629 0.0078 47 1 7.9955 4.0923 1.6698 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193016430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -35.545669 kcal Electronic energy + Delta-G solvation = -22614.873654 eV Core-core repulsion = 19411.498163 eV Total energy + Delta-G solvation = -3203.375491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.84039 -37.83879 -36.95844 -34.80873 -32.50128 -31.55678 -29.78921 -29.09852 -27.82736 -26.11465 -25.89521 -23.75721 -22.40756 -22.03222 -20.07063 -19.31484 -18.82106 -17.07350 -16.87743 -16.08172 -15.63206 -15.13723 -14.97930 -14.58566 -14.00168 -13.81402 -13.61477 -13.36537 -13.19244 -12.84252 -12.62856 -12.46781 -12.34760 -12.12383 -11.97302 -11.82496 -11.78767 -11.34833 -11.11581 -10.94027 -10.81704 -10.77252 -10.72236 -10.61166 -10.49149 -10.47610 -10.23798 -9.89925 -9.86544 -9.54924 -8.60919 -8.31321 -6.85280 -5.77359 -3.22674 2.86559 3.24878 3.36028 3.43775 3.45819 4.44228 4.47642 4.59245 4.65124 4.86669 5.01845 5.02896 5.11988 5.18670 5.29493 5.29876 5.32985 5.37607 5.46270 5.52887 5.56638 5.61434 5.70180 5.76552 5.79042 5.83389 5.86927 5.88419 5.92593 6.02160 6.05500 6.21791 6.27654 6.31101 6.38739 6.55607 6.64691 6.76447 6.86673 7.37154 7.68098 7.78010 7.83566 8.32206 8.41940 9.17942 9.80257 10.27518 11.27437 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044164 B = 0.002797 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.843752 B =10009.299880 C =10119.305137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.136 4.136 8 C 0.522 3.478 9 O -0.550 6.550 10 N -0.615 5.615 11 C 0.104 3.896 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.587 5.587 16 C 0.161 3.839 17 C -0.257 4.257 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.084 3.916 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.031 0.969 43 H -0.001 1.001 44 H 0.047 0.953 45 H 0.252 0.748 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 -8.999 -2.015 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.176 4.176 8 C 0.311 3.689 9 O -0.428 6.428 10 N -0.349 5.349 11 C -0.020 4.020 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.095 0.905 15 N -0.308 5.308 16 C 0.017 3.983 17 C -0.386 4.386 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.552 5.552 21 Si 0.737 3.263 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.040 4.040 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.543 -9.488 -1.932 21.810 hybrid contribution 0.850 0.397 -0.346 1.000 sum -18.693 -9.091 -2.278 20.911 Atomic orbital electron populations 1.21826 0.96050 1.01394 1.01809 1.21566 0.95650 0.96391 1.02164 1.21201 0.95344 0.96218 0.98412 0.91214 1.21951 1.01112 1.00578 0.97237 1.21399 0.93972 0.94916 1.03408 1.21706 0.92087 0.99827 1.03964 1.20374 0.89847 0.82350 0.76363 1.90682 1.70107 1.30817 1.51219 1.48550 1.08898 1.05795 1.71660 1.22043 0.96773 0.82545 1.00644 1.23209 0.95300 0.97537 1.03105 1.21394 0.86041 0.89393 0.96911 0.90451 1.43857 1.10376 1.73880 1.02649 1.20823 0.98394 0.97063 0.82007 1.19298 1.00111 1.22546 0.96686 0.91076 1.24992 0.99869 0.96955 0.97826 1.70094 1.33462 1.29540 1.22153 0.86141 0.83463 0.77426 0.79250 1.20281 1.21722 1.21564 1.23000 0.78617 1.00706 1.01724 0.92536 0.93005 0.92863 0.91956 0.91964 0.92501 0.92650 0.92630 0.91212 0.91276 0.89307 0.89008 0.91931 0.92126 0.90497 0.90511 0.95023 0.98217 0.93463 0.93734 0.91096 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.07 16 3 C -0.09 -0.75 2.39 -90.62 -0.22 -0.97 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -1.12 8.70 37.15 0.32 -0.80 16 6 C -0.10 -1.04 3.97 -26.73 -0.11 -1.14 16 7 C -0.14 -1.48 4.65 -27.88 -0.13 -1.61 16 8 C 0.52 8.21 7.85 -10.98 -0.09 8.12 16 9 O -0.55 -10.75 16.24 5.56 0.09 -10.66 16 10 N -0.61 -9.80 3.33 -170.53 -0.57 -10.37 16 11 C 0.10 1.37 6.49 -3.07 -0.02 1.35 16 12 C -0.15 -2.47 6.50 -24.90 -0.16 -2.64 16 13 C 0.17 3.44 3.53 -65.79 -0.23 3.20 16 14 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 15 N -0.59 -14.31 2.96 -171.04 -0.51 -14.82 16 16 C 0.16 3.88 7.55 59.85 0.45 4.33 16 17 C -0.26 -6.92 9.65 -15.06 -0.15 -7.07 16 18 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 19 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 20 N -0.91 -25.93 10.51 55.49 0.58 -25.34 16 21 Si 0.91 21.65 29.57 -169.99 -5.03 16.62 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.08 1.58 6.47 -2.54 -0.02 1.56 16 26 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.37 6.57 -51.93 -0.34 0.02 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.86 6.57 -51.93 -0.34 0.52 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 43 H 0.00 -0.01 6.38 -51.93 -0.33 -0.34 16 44 H 0.05 1.24 7.14 -51.93 -0.37 0.87 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 47 H 0.07 1.33 6.43 -51.93 -0.33 0.99 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -30.55 362.22 -8.77 -39.33 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.59 Total: -2.81 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.21 Total: 2.58 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.49 Total: -50.53 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.55 -8.77 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193016430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.780 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds