Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47498 * 2 1 4 4 H 1.08996 * 109.47155 * 54.99580 * 3 2 1 5 5 C 1.53004 * 109.46762 * 295.00299 * 3 2 1 6 6 C 1.52997 * 109.47472 * 174.99934 * 3 2 1 7 7 C 1.53002 * 109.46783 * 184.99638 * 6 3 2 8 8 C 1.50705 * 109.46697 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00227 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.47427 * 125.64285 * 0.02807 * 10 8 7 12 12 C 1.54912 * 104.82844 * 204.09015 * 11 10 8 13 13 C 1.55153 * 101.58191 * 322.98968 * 12 11 10 14 14 H 1.09003 * 110.72301 * 277.14003 * 13 12 11 15 15 N 1.46499 * 110.72167 * 154.04444 * 13 12 11 16 16 C 1.46506 * 119.99907 * 301.45413 * 15 13 12 17 17 C 1.36938 * 120.00413 * 121.45619 * 15 13 12 18 18 H 1.08005 * 120.00029 * 23.48297 * 17 15 13 19 19 C 1.38808 * 120.00371 * 203.48904 * 17 15 13 20 20 N 1.31620 * 119.99864 * 15.09982 * 19 17 15 21 21 Si 1.86796 * 120.00322 * 195.09817 * 19 17 15 22 22 H 1.48497 * 109.47070 * 60.00077 * 21 19 17 23 23 H 1.48502 * 109.47334 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47159 * 299.99901 * 21 19 17 25 25 C 1.47017 * 125.65085 * 179.71726 * 10 8 7 26 26 H 1.08998 * 109.47161 * 60.00073 * 1 2 3 27 27 H 1.09001 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46703 * 299.99823 * 1 2 3 29 29 H 1.09004 * 109.47267 * 239.99677 * 2 1 3 30 30 H 1.09001 * 109.47640 * 119.99767 * 2 1 3 31 31 H 1.08996 * 109.47197 * 59.99311 * 5 3 2 32 32 H 1.08997 * 109.47075 * 179.97438 * 5 3 2 33 33 H 1.09005 * 109.46717 * 299.99648 * 5 3 2 34 34 H 1.09002 * 109.46709 * 65.00385 * 6 3 2 35 35 H 1.08998 * 109.46926 * 305.00265 * 6 3 2 36 36 H 1.08991 * 109.47378 * 299.99599 * 7 6 3 37 37 H 1.09002 * 109.46888 * 60.00856 * 7 6 3 38 38 H 1.08998 * 110.37071 * 322.92684 * 11 10 8 39 39 H 1.08997 * 110.37035 * 85.25712 * 11 10 8 40 40 H 1.09000 * 111.00759 * 81.06291 * 12 11 10 41 41 H 1.09005 * 111.00367 * 204.92094 * 12 11 10 42 42 H 1.08998 * 109.47150 * 95.20966 * 16 15 13 43 43 H 1.09000 * 109.47302 * 215.21186 * 16 15 13 44 44 H 1.09003 * 109.46906 * 335.21187 * 16 15 13 45 45 H 0.96999 * 120.00564 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88194 * 298.39294 * 25 10 8 47 47 H 1.08993 * 109.88668 * 59.55775 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8850 0.2510 8 6 5.5665 2.8868 0.3743 9 8 6.1772 1.8391 0.3625 10 7 6.2311 4.0528 0.4975 11 6 5.6171 5.3928 0.5268 12 6 6.7394 6.3535 0.0609 13 6 7.9913 5.7098 0.7134 14 1 8.0893 6.0239 1.7525 15 7 9.2002 6.0443 -0.0434 16 6 9.3033 5.6786 -1.4584 17 6 10.2339 6.6988 0.5716 18 1 10.3484 6.6401 1.6440 19 6 11.1345 7.4378 -0.1831 20 7 10.8434 7.7598 -1.4256 21 14 12.7596 7.9755 0.5648 22 1 13.5350 6.7781 0.9772 23 1 13.5362 8.7455 -0.4399 24 1 12.4999 8.8299 1.7513 25 6 7.6879 4.1987 0.6315 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5490 2.1251 -1.3969 32 1 1.9982 3.1543 -1.3072 33 1 2.0699 1.5874 -2.1492 34 1 4.0029 0.9836 -0.7597 35 1 3.8570 0.8800 1.0113 36 1 3.7723 3.4492 -0.6345 37 1 3.6264 3.3457 1.1365 38 1 4.7708 5.4374 -0.1586 39 1 5.2999 5.6427 1.5393 40 1 6.8239 6.3579 -1.0258 41 1 6.5746 7.3612 0.4425 42 1 9.0010 6.5248 -2.0753 43 1 10.3340 5.4099 -1.6900 44 1 8.6517 4.8290 -1.6624 45 1 11.4728 8.2759 -1.9532 46 1 8.0284 3.7006 1.5392 47 1 8.1850 3.7693 -0.2383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193016431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -36.007481 kcal Electronic energy + Delta-G solvation = -22678.759851 eV Core-core repulsion = 19475.364334 eV Total energy + Delta-G solvation = -3203.395517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.83457 -37.83018 -36.94621 -34.76806 -32.49203 -31.53564 -29.80407 -29.09458 -27.82235 -26.09850 -25.87478 -23.75385 -22.37558 -22.07990 -20.06641 -19.24670 -18.85246 -17.05259 -16.83961 -16.11022 -15.53130 -15.37705 -14.83154 -14.37136 -14.29102 -13.75778 -13.64932 -13.31620 -13.21425 -12.85878 -12.52089 -12.44490 -12.35566 -12.15927 -11.87735 -11.80273 -11.66352 -11.35221 -11.10638 -10.99592 -10.78440 -10.76069 -10.71283 -10.61271 -10.57469 -10.48810 -10.25593 -9.88823 -9.87993 -9.54201 -8.58708 -8.28915 -6.81505 -5.77419 -3.24658 2.88055 3.26072 3.37258 3.43052 3.44685 4.45253 4.47803 4.59985 4.66001 4.86976 5.01889 5.06064 5.12694 5.19736 5.28474 5.32929 5.34382 5.35902 5.48580 5.54021 5.57839 5.59911 5.70595 5.77349 5.80386 5.84359 5.88108 5.90141 5.92202 6.02471 6.06219 6.22780 6.28629 6.32024 6.41037 6.58324 6.66222 6.79851 6.88217 7.31407 7.67626 7.76481 7.84447 8.34047 8.43433 9.17392 9.80358 10.29650 11.27256 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047844 B = 0.002826 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.092023 B = 9906.384577 C =10037.110566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.136 4.136 8 C 0.521 3.479 9 O -0.550 6.550 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.586 5.586 16 C 0.158 3.842 17 C -0.262 4.262 18 H 0.069 0.931 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.086 3.914 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.040 0.960 44 H 0.003 0.997 45 H 0.254 0.746 46 H 0.059 0.941 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.576 -8.732 2.274 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.176 4.176 8 C 0.310 3.690 9 O -0.428 6.428 10 N -0.348 5.348 11 C -0.024 4.024 12 C -0.191 4.191 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.306 5.306 16 C 0.014 3.986 17 C -0.391 4.391 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.038 4.038 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.022 0.978 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.134 -9.248 2.107 21.356 hybrid contribution 0.897 0.508 0.275 1.067 sum -18.237 -8.740 2.382 20.362 Atomic orbital electron populations 1.21824 0.96051 1.01389 1.01808 1.21567 0.95648 0.96396 1.02162 1.21203 0.95333 0.96212 0.98411 0.91224 1.21956 1.01109 1.00592 0.97244 1.21399 0.93978 0.94909 1.03405 1.21704 0.92077 0.99837 1.03951 1.20386 0.89848 0.82351 0.76427 1.90680 1.70111 1.30900 1.51141 1.48571 1.08702 1.05897 1.71628 1.22361 0.96961 0.82427 1.00628 1.23382 0.95366 0.98209 1.02178 1.21299 0.86671 0.89697 0.96114 0.90425 1.43849 1.13352 1.65662 1.07745 1.20798 0.98375 0.95177 0.84299 1.19158 1.03338 1.24337 0.92292 0.91323 1.25020 0.99970 0.97773 0.96622 1.70063 1.35253 1.40448 1.08962 0.86319 0.83742 0.78252 0.78111 1.21008 1.21635 1.20859 1.22721 0.79049 1.00388 1.01676 0.92532 0.93010 0.92867 0.91948 0.91977 0.92623 0.92499 0.92632 0.91207 0.91287 0.89009 0.89297 0.91390 0.91689 0.90657 0.90378 0.94788 0.94161 0.97841 0.93612 0.92248 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.08 16 3 C -0.09 -0.76 2.39 -90.62 -0.22 -0.98 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -1.16 8.70 37.16 0.32 -0.84 16 6 C -0.10 -1.05 3.97 -26.73 -0.11 -1.16 16 7 C -0.14 -1.49 4.46 -27.88 -0.12 -1.62 16 8 C 0.52 8.27 7.85 -10.98 -0.09 8.19 16 9 O -0.55 -10.85 16.31 5.56 0.09 -10.75 16 10 N -0.61 -9.85 3.33 -170.52 -0.57 -10.41 16 11 C 0.10 1.31 6.69 -2.53 -0.02 1.30 16 12 C -0.15 -2.51 6.65 -24.58 -0.16 -2.67 16 13 C 0.17 3.41 3.42 -66.09 -0.23 3.18 16 14 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 15 N -0.59 -14.33 2.93 -171.38 -0.50 -14.83 16 16 C 0.16 3.85 7.70 59.85 0.46 4.31 16 17 C -0.26 -7.04 9.59 -15.06 -0.14 -7.19 16 18 H 0.07 1.80 7.85 -52.48 -0.41 1.38 16 19 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 20 N -0.90 -25.91 10.86 55.49 0.60 -25.31 16 21 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.09 1.62 6.41 -3.06 -0.02 1.60 16 26 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.38 6.56 -51.93 -0.34 0.03 16 32 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.09 0.89 6.27 -51.93 -0.33 0.57 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.37 7.28 -51.93 -0.38 0.99 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 43 H 0.04 1.06 7.43 -51.93 -0.39 0.67 16 44 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.07 1.51 6.15 -51.93 -0.32 1.19 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -30.74 361.94 -8.70 -39.44 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -8.56 Total: -2.59 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.19 Total: 2.45 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.47 Total: -50.55 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.74 -8.70 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193016431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.428 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds