Wall clock time and date at job start Tue Mar 31 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08997 * 110.27133 * 305.69424 * 3 2 1 5 5 C 1.54596 * 110.31283 * 67.79133 * 3 2 1 6 6 C 1.55098 * 102.84559 * 140.81153 * 5 3 2 7 7 N 1.48530 * 103.28687 * 322.69490 * 6 5 3 8 8 C 1.46902 * 110.99965 * 159.66702 * 7 6 5 9 9 C 1.52997 * 109.46963 * 72.60390 * 8 7 6 10 10 C 1.50706 * 109.47021 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99648 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99887 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00258 * 0.02562 * 12 10 9 14 14 C 1.46504 * 120.00169 * 179.97438 * 12 10 9 15 15 C 1.50705 * 109.47031 * 89.99538 * 14 12 10 16 16 H 1.07999 * 119.99351 * 0.02562 * 15 14 12 17 17 C 1.37869 * 119.99988 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47130 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47100 * 120.00298 * 19 17 15 22 22 H 1.48494 * 109.47240 * 240.00212 * 19 17 15 23 23 C 1.47902 * 105.82011 * 39.15350 * 7 6 5 24 24 H 1.09001 * 109.91893 * 94.02435 * 23 7 6 25 25 C 1.53003 * 110.08217 * 215.22493 * 23 7 6 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.08999 * 110.72049 * 259.23108 * 5 3 2 32 32 H 1.08999 * 110.72017 * 22.50867 * 5 3 2 33 33 H 1.08997 * 110.68558 * 204.21543 * 6 5 3 34 34 H 1.09001 * 110.73453 * 81.19661 * 6 5 3 35 35 H 1.09005 * 109.46751 * 192.60230 * 8 7 6 36 36 H 1.08991 * 109.47014 * 312.60272 * 8 7 6 37 37 H 1.08993 * 109.47369 * 299.99832 * 9 8 7 38 38 H 1.09001 * 109.47445 * 60.00198 * 9 8 7 39 39 H 1.08997 * 109.47235 * 90.00130 * 13 12 10 40 40 H 1.09003 * 109.46570 * 210.00280 * 13 12 10 41 41 H 1.09006 * 109.46900 * 329.99409 * 13 12 10 42 42 H 1.08992 * 109.47279 * 210.00247 * 14 12 10 43 43 H 1.09003 * 109.46817 * 330.00298 * 14 12 10 44 44 H 0.97005 * 119.99682 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.46855 * 177.68364 * 25 23 7 46 46 H 1.08999 * 109.47198 * 297.69269 * 25 23 7 47 47 H 1.09007 * 109.47050 * 57.68955 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9974 -0.8304 5 6 1.7022 2.1312 1.3423 6 6 2.9722 2.9749 1.6261 7 7 4.0753 2.1031 1.1472 8 6 5.2895 2.8871 0.8841 9 6 5.9134 3.3219 2.2116 10 6 7.1594 4.1256 1.9417 11 8 7.5136 4.3300 0.7999 12 7 7.8805 4.6164 2.9691 13 6 7.4535 4.3680 4.3483 14 6 9.0920 5.3972 2.7067 15 6 8.7338 6.8564 2.5905 16 1 7.7065 7.1707 2.7015 17 6 9.7175 7.7901 2.3426 18 7 10.9684 7.4072 2.2071 19 14 9.2736 9.5989 2.1993 20 1 7.8105 9.7662 2.3906 21 1 9.9998 10.3708 3.2396 22 1 9.6576 10.0978 0.8545 23 6 3.5771 1.4659 -0.0910 24 1 3.8888 2.0469 -0.9590 25 6 4.1146 0.0376 -0.1998 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8268 2.7721 1.2373 32 1 1.5477 1.3909 2.1273 33 1 3.0731 3.1718 2.6934 34 1 2.9485 3.9089 1.0646 35 1 6.0028 2.2770 0.3299 36 1 5.0325 3.7689 0.2973 37 1 5.2002 3.9319 2.7658 38 1 6.1704 2.4401 2.7985 39 1 7.9077 3.4451 4.7087 40 1 7.7672 5.1985 4.9808 41 1 6.3678 4.2760 4.3816 42 1 9.7971 5.2602 3.5265 43 1 9.5472 5.0596 1.7756 44 1 11.6604 8.0642 2.0323 45 1 3.7088 -0.4362 -1.0936 46 1 5.2024 0.0626 -0.2637 47 1 3.8154 -0.5313 0.6806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193607510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:51 Heat of formation + Delta-G solvation = -46.181910 kcal Electronic energy + Delta-G solvation = -22778.096106 eV Core-core repulsion = 19574.259393 eV Total energy + Delta-G solvation = -3203.836713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86676 -38.79146 -35.15686 -34.65852 -32.64049 -31.68659 -31.48952 -28.87680 -27.43851 -25.78286 -25.59571 -23.67990 -23.19858 -22.05569 -20.74897 -19.11525 -18.21355 -16.65562 -16.50630 -15.82418 -15.37932 -15.32135 -14.98817 -14.83268 -14.41626 -14.19760 -13.83087 -13.58978 -13.04620 -12.66334 -12.59628 -12.33105 -12.27922 -12.15021 -11.91593 -11.77011 -11.60832 -11.51453 -11.35341 -11.27234 -11.09287 -10.86598 -10.70427 -10.65417 -10.60305 -10.53672 -10.44112 -10.14604 -9.59013 -8.84857 -8.44331 -8.42686 -7.60001 -6.03069 -4.07679 3.30001 3.37112 3.40753 3.50758 3.73569 4.19457 4.39735 4.46853 4.47922 4.59768 5.01044 5.09751 5.10868 5.17626 5.22314 5.27774 5.29958 5.32960 5.42202 5.45038 5.52392 5.59235 5.66554 5.67815 5.71985 5.76152 5.79642 5.89835 5.90832 5.93843 5.98645 6.05145 6.11804 6.16595 6.21305 6.25265 6.28105 6.92004 7.06859 7.09720 7.47234 7.57978 7.93773 8.25529 8.46699 8.92448 9.14340 9.57442 11.05038 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.003077 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.899136 B = 9098.846656 C = 9291.466060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.095 4.095 4 H 0.072 0.928 5 C -0.116 4.116 6 C 0.031 3.969 7 N -0.514 5.514 8 C 0.065 3.935 9 C -0.131 4.131 10 C 0.504 3.496 11 O -0.547 6.547 12 N -0.604 5.604 13 C 0.085 3.915 14 C 0.244 3.756 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.065 3.935 24 H 0.052 0.948 25 C -0.136 4.136 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.262 0.738 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.289 -14.619 -0.038 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.114 4.114 4 H 0.090 0.910 5 C -0.154 4.154 6 C -0.097 4.097 7 N -0.239 5.239 8 C -0.064 4.064 9 C -0.171 4.171 10 C 0.290 3.710 11 O -0.425 6.425 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.125 3.875 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.043 4.043 24 H 0.070 0.930 25 C -0.194 4.194 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.737 -14.818 -0.275 23.890 hybrid contribution -0.262 1.829 -0.543 1.926 sum -19.000 -12.989 -0.818 23.030 Atomic orbital electron populations 1.21818 0.96255 1.01349 1.01709 1.21707 0.95222 0.95865 1.02428 1.22070 0.94569 0.96743 0.98044 0.90992 1.22588 0.96985 0.98840 0.97023 1.23290 0.90530 0.94781 1.01081 1.64660 1.03656 1.28457 1.27112 1.21965 0.91594 0.96624 0.96184 1.21566 0.96127 1.00455 0.98987 1.20342 0.84951 0.80285 0.85407 1.90658 1.70666 1.59814 1.21357 1.48158 1.28043 1.52465 1.04932 1.21628 0.99079 1.00928 0.84334 1.19285 0.80677 0.89788 0.97790 1.21471 0.94165 0.91686 1.48970 0.92501 1.24947 0.94872 0.99242 0.95162 1.69949 1.00094 1.34250 1.49140 0.86442 0.78473 0.84779 0.77720 1.19840 1.20949 1.20880 1.22364 0.93685 0.96395 0.91894 0.93035 1.21849 1.00852 0.95233 1.01454 0.93026 0.92964 0.92711 0.91632 0.91301 0.91384 0.90683 0.90020 0.93664 0.90161 0.93759 0.89810 0.88980 0.93750 0.90907 0.92423 0.95042 0.93874 0.92790 0.92415 0.92845 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.77 37.16 0.36 -0.65 16 2 C -0.11 -0.85 4.11 -26.73 -0.11 -0.96 16 3 C -0.10 -0.84 3.01 -89.26 -0.27 -1.11 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.12 -1.01 5.81 -24.78 -0.14 -1.16 16 6 C 0.03 0.33 5.91 -1.81 -0.01 0.32 16 7 N -0.51 -6.26 4.89 -222.47 -1.09 -7.35 16 8 C 0.06 0.96 3.99 -3.82 -0.02 0.95 16 9 C -0.13 -2.01 4.34 -27.88 -0.12 -2.13 16 10 C 0.50 10.72 7.67 -10.99 -0.08 10.63 16 11 O -0.55 -14.03 15.56 5.56 0.09 -13.95 16 12 N -0.60 -13.16 2.86 -182.95 -0.52 -13.68 16 13 C 0.08 1.37 10.24 59.85 0.61 1.98 16 14 C 0.24 6.54 5.16 -5.19 -0.03 6.52 16 15 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 19 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.07 0.70 3.04 -66.64 -0.20 0.50 16 24 H 0.05 0.61 7.77 -51.93 -0.40 0.21 16 25 C -0.14 -1.32 8.36 37.16 0.31 -1.01 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 7.52 -51.93 -0.39 -0.04 16 29 H 0.07 0.47 6.50 -51.93 -0.34 0.13 16 30 H 0.07 0.54 6.91 -51.93 -0.36 0.18 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 33 H 0.08 0.84 7.80 -51.93 -0.41 0.43 16 34 H 0.05 0.52 7.81 -51.93 -0.41 0.12 16 35 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 36 H 0.04 0.73 7.79 -51.93 -0.40 0.33 16 37 H 0.08 1.17 6.63 -51.93 -0.34 0.82 16 38 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 42 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.06 0.47 6.71 -51.93 -0.35 0.12 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.62 6.82 -51.93 -0.35 0.26 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.85 364.89 -9.06 -41.91 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -8.63 Total: -3.32 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.12 Total: 0.03 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.87 Total: -47.30 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.85 -9.06 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193607510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.271 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds