Wall clock time and date at job start Tue Mar 31 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46767 * 2 1 4 4 H 1.08996 * 109.47159 * 304.99924 * 3 2 1 5 5 C 1.52998 * 109.46828 * 65.00062 * 3 2 1 6 6 C 1.53002 * 109.46974 * 184.99872 * 3 2 1 7 7 C 1.52992 * 109.46869 * 175.00169 * 6 3 2 8 8 C 1.50700 * 109.47038 * 180.02562 * 7 6 3 9 9 O 1.21281 * 119.99891 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.48207 * 119.97021 * 180.02562 * 10 8 7 12 12 C 1.47136 * 110.34354 * 102.51750 * 11 10 8 13 13 C 1.53789 * 111.84457 * 58.29499 * 12 11 10 14 14 N 1.43465 * 107.95825 * 281.67085 * 13 12 11 15 15 C 1.36944 * 118.93846 * 273.60773 * 14 13 12 16 16 H 1.08000 * 119.99821 * 24.61982 * 15 14 13 17 17 C 1.38805 * 120.00011 * 204.62172 * 15 14 13 18 18 N 1.31621 * 119.99891 * 203.00951 * 17 15 14 19 19 Si 1.86805 * 120.00190 * 23.00689 * 17 15 14 20 20 H 1.48500 * 109.47330 * 265.74629 * 19 17 15 21 21 H 1.48496 * 109.47260 * 145.74620 * 19 17 15 22 22 H 1.48498 * 109.47188 * 25.74356 * 19 17 15 23 23 C 1.48859 * 122.12251 * 93.88897 * 14 13 12 24 24 C 1.43619 * 119.96551 * 0.02562 * 10 8 7 25 25 H 1.09004 * 109.47187 * 60.00202 * 1 2 3 26 26 H 1.09002 * 109.46674 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47246 * 300.00021 * 1 2 3 28 28 H 1.09001 * 109.47163 * 240.00525 * 2 1 3 29 29 H 1.08992 * 109.47526 * 120.00092 * 2 1 3 30 30 H 1.09005 * 109.47291 * 59.99772 * 5 3 2 31 31 H 1.08998 * 109.46904 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.47270 * 299.99830 * 5 3 2 33 33 H 1.09005 * 109.46668 * 55.00344 * 6 3 2 34 34 H 1.09000 * 109.46851 * 295.00416 * 6 3 2 35 35 H 1.09004 * 109.47760 * 60.00262 * 7 6 3 36 36 H 1.09000 * 109.47585 * 299.99797 * 7 6 3 37 37 H 1.08997 * 109.32692 * 342.24266 * 11 10 8 38 38 H 1.09005 * 109.18498 * 222.69328 * 11 10 8 39 39 H 1.09001 * 109.00324 * 297.68618 * 12 11 10 40 40 H 1.09000 * 108.94712 * 178.86542 * 12 11 10 41 41 H 1.08997 * 109.76815 * 162.05216 * 13 12 11 42 42 H 1.09006 * 109.80641 * 41.30596 * 13 12 11 43 43 H 0.96998 * 119.99910 * 5.15680 * 18 17 15 44 44 H 1.08995 * 109.48053 * 80.34635 * 23 14 13 45 45 H 1.09000 * 109.48016 * 200.38205 * 23 14 13 46 46 H 1.09003 * 108.87915 * 31.42135 * 24 10 8 47 47 H 1.09008 * 108.87471 * 149.86180 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0643 2.8851 -0.2510 8 6 5.5662 2.8870 -0.3755 9 8 6.1768 1.8391 -0.3654 10 7 6.2307 4.0530 -0.4990 11 6 7.7077 4.0540 -0.6219 12 6 8.1044 4.2744 -2.0216 13 6 7.5516 5.6002 -2.5710 14 7 6.1689 5.4013 -2.8978 15 6 5.8444 4.9077 -4.1333 16 1 6.5606 4.3152 -4.6833 17 6 4.5950 5.1689 -4.6788 18 7 4.1006 4.3722 -5.6026 19 14 3.6153 6.6511 -4.1019 20 1 2.6827 6.2385 -3.0225 21 1 2.8400 7.2057 -5.2406 22 1 4.5442 7.6875 -3.5841 23 6 5.0753 5.7199 -1.9395 24 6 5.5069 5.2934 -0.5114 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0697 1.5875 2.1492 31 1 1.9988 3.1541 1.3076 32 1 0.5488 2.1252 1.3969 33 1 3.8570 0.8802 -1.0114 34 1 4.0028 0.9837 0.7597 35 1 3.7721 3.4495 0.6346 36 1 3.6262 3.3459 -1.1364 37 1 8.0985 3.0946 -0.2830 38 1 8.1183 4.8503 -0.0010 39 1 7.7275 3.4529 -2.6308 40 1 9.1925 4.2911 -2.0826 41 1 8.1041 5.8875 -3.4655 42 1 7.6431 6.3801 -1.8150 43 1 4.5743 3.5623 -5.8486 44 1 4.8764 6.7914 -1.9581 45 1 4.1734 5.1776 -2.2238 46 1 4.6170 5.1887 0.1092 47 1 6.1390 6.0748 -0.0892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197519201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:01 Heat of formation + Delta-G solvation = -33.260711 kcal Electronic energy + Delta-G solvation = -24116.450283 eV Core-core repulsion = 20913.173876 eV Total energy + Delta-G solvation = -3203.276408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.90243 -37.53642 -36.74059 -34.34165 -33.13233 -31.86417 -31.36886 -28.77200 -27.65808 -26.21006 -25.40469 -23.18404 -22.97841 -21.40688 -19.87489 -19.74594 -18.51101 -17.42238 -16.62374 -15.99847 -15.52487 -15.14652 -14.93894 -14.37094 -14.30415 -13.87491 -13.58212 -13.33911 -13.24152 -12.90658 -12.81570 -12.47895 -12.35745 -12.06253 -11.93376 -11.64562 -11.57674 -11.49520 -11.34538 -10.99510 -10.81034 -10.51445 -10.46341 -10.37698 -10.31657 -10.27465 -9.99265 -9.73151 -9.29097 -9.19159 -8.53811 -8.14762 -6.96928 -6.32081 -3.28714 3.07599 3.34666 3.47464 3.51025 3.64195 4.58182 4.71969 4.86413 4.91126 4.93185 5.10267 5.29295 5.31666 5.38652 5.43634 5.44313 5.49388 5.56562 5.58825 5.59703 5.78277 5.81833 5.83060 5.85111 5.91654 5.95461 6.01601 6.05360 6.10895 6.13495 6.20796 6.29008 6.31707 6.35237 6.45946 6.50250 6.52521 6.57477 6.70509 6.90401 7.12667 7.88015 8.06197 8.45657 8.64839 9.04371 9.66215 10.14093 11.12644 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.006340 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.513482 B = 4415.503990 C = 5545.473455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.096 4.096 4 H 0.073 0.927 5 C -0.149 4.149 6 C -0.095 4.095 7 C -0.142 4.142 8 C 0.522 3.478 9 O -0.555 6.555 10 N -0.589 5.589 11 C 0.129 3.871 12 C -0.168 4.168 13 C 0.163 3.837 14 N -0.598 5.598 15 C -0.345 4.345 16 H 0.066 0.934 17 C -0.012 4.012 18 N -0.918 5.918 19 Si 1.053 2.947 20 H -0.296 1.296 21 H -0.301 1.301 22 H -0.286 1.286 23 C 0.101 3.899 24 C 0.094 3.906 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -0.927 14.832 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.114 4.114 4 H 0.092 0.908 5 C -0.206 4.206 6 C -0.133 4.133 7 C -0.181 4.181 8 C 0.311 3.689 9 O -0.434 6.434 10 N -0.321 5.321 11 C 0.008 3.992 12 C -0.209 4.209 13 C 0.035 3.965 14 N -0.321 5.321 15 C -0.474 4.474 16 H 0.084 0.916 17 C -0.214 4.214 18 N -0.557 5.557 19 Si 0.885 3.115 20 H -0.224 1.224 21 H -0.229 1.229 22 H -0.213 1.213 23 C -0.026 4.026 24 C -0.033 4.033 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.168 -0.611 14.572 14.925 hybrid contribution 1.405 -0.710 0.094 1.578 sum -1.763 -1.321 14.666 14.831 Atomic orbital electron populations 1.21826 0.96117 1.01233 1.01879 1.21548 0.95616 0.96469 1.01979 1.21218 0.95522 0.96198 0.98499 0.90831 1.21932 1.01022 1.00489 0.97171 1.21350 0.93919 0.95028 1.03008 1.21780 0.92476 0.99801 1.04085 1.20617 0.90064 0.83121 0.75132 1.90617 1.70033 1.31245 1.51460 1.47372 1.07066 1.06020 1.71601 1.20545 0.79408 1.01864 0.97402 1.21820 0.99277 1.03005 0.96826 1.20318 0.85888 0.92779 0.97524 1.43906 0.99637 1.75775 1.12751 1.20225 1.02380 1.30179 0.94605 0.91640 1.26112 0.95634 1.03058 0.96556 1.70832 1.38827 1.12621 1.33401 0.84034 0.75413 0.77400 0.74664 1.22396 1.22874 1.21263 1.22684 0.93066 0.98165 0.88645 1.21857 0.96560 0.86212 0.98622 0.92658 0.93130 0.92666 0.91897 0.92214 0.92920 0.92592 0.92677 0.91218 0.91682 0.89388 0.88458 0.90394 0.92184 0.91214 0.92571 0.93112 0.94733 0.92610 0.94259 0.91017 0.91018 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 37.16 0.36 -1.16 16 2 C -0.12 -1.33 5.40 -26.73 -0.14 -1.48 16 3 C -0.10 -1.18 2.39 -90.61 -0.22 -1.39 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 5 C -0.15 -1.56 8.70 37.16 0.32 -1.23 16 6 C -0.10 -1.40 3.97 -26.73 -0.11 -1.50 16 7 C -0.14 -2.20 4.01 -27.89 -0.11 -2.31 16 8 C 0.52 9.77 7.67 -10.98 -0.08 9.69 16 9 O -0.55 -12.02 15.42 5.56 0.09 -11.94 16 10 N -0.59 -10.32 2.46 -176.46 -0.43 -10.76 16 11 C 0.13 2.14 5.70 -5.92 -0.03 2.10 16 12 C -0.17 -3.06 5.64 -29.14 -0.16 -3.22 16 13 C 0.16 3.19 5.63 -5.24 -0.03 3.16 16 14 N -0.60 -13.79 2.33 -171.81 -0.40 -14.19 16 15 C -0.35 -9.56 9.55 -15.06 -0.14 -9.70 16 16 H 0.07 1.99 8.06 -52.49 -0.42 1.57 16 17 C -0.01 -0.35 5.14 -17.43 -0.09 -0.44 16 18 N -0.92 -28.28 13.70 55.49 0.76 -27.52 16 19 Si 1.05 25.43 24.43 -169.99 -4.15 21.27 16 20 H -0.30 -6.59 6.75 56.52 0.38 -6.21 16 21 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -6.52 6.41 56.52 0.36 -6.15 16 23 C 0.10 2.03 4.54 -1.59 -0.01 2.02 16 24 C 0.09 1.48 5.05 -4.42 -0.02 1.46 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 33 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.09 1.11 5.79 -51.93 -0.30 0.81 16 36 H 0.10 1.67 7.35 -51.93 -0.38 1.29 16 37 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 38 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 39 H 0.07 1.56 7.91 -51.93 -0.41 1.15 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 42 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 43 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 44 H 0.04 0.77 5.81 -51.93 -0.30 0.47 16 45 H 0.07 1.58 4.75 -51.93 -0.25 1.34 16 46 H 0.07 0.94 6.38 -51.93 -0.33 0.61 16 47 H 0.07 0.93 7.73 -51.92 -0.40 0.53 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -32.11 347.83 -7.80 -39.91 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.43 Total: 2.00 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.47 Total: -4.02 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.07 Total: -52.46 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.15 Total: 21.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.11 -7.80 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197519201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.651 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds