Wall clock time and date at job start Tue Mar 31 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 H 1.09004 * 109.47072 * 54.99863 * 3 2 1 5 5 C 1.52999 * 109.47019 * 294.99875 * 3 2 1 6 6 C 1.53001 * 109.46981 * 174.99793 * 3 2 1 7 7 C 1.53003 * 109.46844 * 184.99752 * 6 3 2 8 8 C 1.50700 * 109.47017 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00230 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00181 * 180.02562 * 8 7 6 11 11 C 1.48215 * 119.97090 * 179.97438 * 10 8 7 12 12 C 1.47142 * 110.34074 * 102.51152 * 11 10 8 13 13 C 1.53798 * 111.84073 * 58.29789 * 12 11 10 14 14 N 1.43465 * 107.96167 * 281.66563 * 13 12 11 15 15 C 1.36931 * 118.93711 * 273.61287 * 14 13 12 16 16 H 1.08003 * 120.00581 * 24.64745 * 15 14 13 17 17 C 1.38818 * 119.99713 * 204.65115 * 15 14 13 18 18 N 1.31616 * 120.00073 * 202.97891 * 17 15 14 19 19 Si 1.86796 * 120.00049 * 22.98043 * 17 15 14 20 20 H 1.48506 * 109.47050 * 265.76964 * 19 17 15 21 21 H 1.48494 * 109.47270 * 145.77088 * 19 17 15 22 22 H 1.48504 * 109.47227 * 25.76389 * 19 17 15 23 23 C 1.48858 * 122.11712 * 93.88834 * 14 13 12 24 24 C 1.43626 * 119.96869 * 0.02562 * 10 8 7 25 25 H 1.09002 * 109.47003 * 300.00195 * 1 2 3 26 26 H 1.09004 * 109.46834 * 59.99879 * 1 2 3 27 27 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47003 * 239.99805 * 2 1 3 29 29 H 1.08996 * 109.46986 * 119.99873 * 2 1 3 30 30 H 1.08999 * 109.47480 * 60.00277 * 5 3 2 31 31 H 1.09000 * 109.47121 * 180.02562 * 5 3 2 32 32 H 1.08994 * 109.47209 * 299.99946 * 5 3 2 33 33 H 1.09006 * 109.47187 * 65.00263 * 6 3 2 34 34 H 1.08993 * 109.47339 * 304.99944 * 6 3 2 35 35 H 1.08996 * 109.47095 * 60.00791 * 7 6 3 36 36 H 1.08993 * 109.47310 * 300.00210 * 7 6 3 37 37 H 1.08996 * 109.32691 * 342.24837 * 11 10 8 38 38 H 1.08998 * 109.18337 * 222.68855 * 11 10 8 39 39 H 1.08999 * 109.00858 * 297.69132 * 12 11 10 40 40 H 1.08999 * 108.94623 * 178.86582 * 12 11 10 41 41 H 1.09003 * 109.76436 * 162.04958 * 13 12 11 42 42 H 1.09005 * 109.80574 * 41.30359 * 13 12 11 43 43 H 0.97004 * 120.00427 * 5.16027 * 18 17 15 44 44 H 1.08993 * 109.48383 * 80.35276 * 23 14 13 45 45 H 1.09000 * 109.47744 * 200.38336 * 23 14 13 46 46 H 1.08997 * 108.86922 * 31.42836 * 24 10 8 47 47 H 1.09001 * 108.86963 * 149.86615 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 6 4.0645 2.8850 0.2511 8 6 5.5664 2.8869 0.3744 9 8 6.1772 1.8391 0.3626 10 7 6.2311 4.0528 0.4977 11 6 7.7082 4.0538 0.6194 12 6 8.3267 4.4313 -0.6612 13 6 7.8587 5.8172 -1.1361 14 7 6.5502 5.6710 -1.7060 15 6 6.4373 5.3274 -3.0267 16 1 7.2394 4.7954 -3.5168 17 6 5.2920 5.6628 -3.7357 18 7 4.9633 4.9842 -4.8144 19 14 4.2172 7.0775 -3.1588 20 1 3.1243 6.5514 -2.3019 21 1 3.6337 7.7682 -4.3367 22 1 5.0391 8.0375 -2.3788 23 6 5.3114 5.8868 -0.9093 24 6 5.5072 5.2932 0.5121 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5490 2.1253 -1.3970 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5875 -2.1491 33 1 4.0030 0.9835 -0.7596 34 1 3.8571 0.8800 1.0113 35 1 3.6265 3.3457 1.1365 36 1 3.7723 3.4493 -0.6344 37 1 8.0474 3.0578 0.9040 38 1 8.0038 4.7686 1.3874 39 1 8.0626 3.6898 -1.4152 40 1 9.4099 4.4444 -0.5408 41 1 8.5476 6.2010 -1.8886 42 1 7.8176 6.5032 -0.2900 43 1 5.4784 4.2036 -5.0721 44 1 5.1080 6.9550 -0.8356 45 1 4.4736 5.3899 -1.3984 46 1 4.5291 5.1253 0.9629 47 1 6.0545 6.0137 1.1199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197519202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:04 Heat of formation + Delta-G solvation = -33.222543 kcal Electronic energy + Delta-G solvation = -24213.006386 eV Core-core repulsion = 21009.731633 eV Total energy + Delta-G solvation = -3203.274753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.90018 -37.51759 -36.72540 -34.34164 -33.13027 -31.86400 -31.36629 -28.71062 -27.63791 -26.16265 -25.39099 -23.18052 -22.97735 -21.40453 -19.87251 -19.72822 -18.51176 -17.42369 -16.56715 -15.98515 -15.62566 -15.02373 -14.79679 -14.71161 -14.06177 -13.82260 -13.57456 -13.52279 -13.04747 -12.91581 -12.80712 -12.44860 -12.40155 -11.97056 -11.81740 -11.62277 -11.57732 -11.49775 -11.33038 -11.01164 -10.79634 -10.48434 -10.43258 -10.35880 -10.31053 -10.25754 -9.99462 -9.73325 -9.29097 -9.19219 -8.53893 -8.14710 -6.96926 -6.32010 -3.28655 3.07770 3.34238 3.47365 3.50857 3.63955 4.57972 4.72763 4.87754 4.91713 4.96610 5.10332 5.29751 5.32157 5.38236 5.42723 5.49131 5.52919 5.57738 5.63226 5.67674 5.78705 5.81748 5.82420 5.88637 5.92933 5.96263 6.05761 6.09256 6.12954 6.25206 6.26953 6.29836 6.31877 6.35728 6.46073 6.50608 6.58270 6.61875 6.70489 6.90372 7.12635 7.88065 8.06184 8.45590 8.64900 9.04344 9.66166 10.14150 11.12606 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.006610 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.604604 B = 4234.718351 C = 5490.379521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.067 0.933 5 C -0.153 4.153 6 C -0.096 4.096 7 C -0.142 4.142 8 C 0.522 3.478 9 O -0.555 6.555 10 N -0.589 5.589 11 C 0.129 3.871 12 C -0.168 4.168 13 C 0.163 3.837 14 N -0.598 5.598 15 C -0.346 4.346 16 H 0.066 0.934 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 1.052 2.948 20 H -0.296 1.296 21 H -0.301 1.301 22 H -0.286 1.286 23 C 0.101 3.899 24 C 0.093 3.907 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -2.589 13.504 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.085 0.915 5 C -0.210 4.210 6 C -0.134 4.134 7 C -0.182 4.182 8 C 0.311 3.689 9 O -0.434 6.434 10 N -0.321 5.321 11 C 0.008 3.992 12 C -0.209 4.209 13 C 0.035 3.965 14 N -0.320 5.320 15 C -0.474 4.474 16 H 0.084 0.916 17 C -0.213 4.213 18 N -0.556 5.556 19 Si 0.884 3.116 20 H -0.224 1.224 21 H -0.229 1.229 22 H -0.213 1.213 23 C -0.025 4.025 24 C -0.033 4.033 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.446 -2.234 13.112 14.373 hybrid contribution 1.378 -0.725 0.251 1.577 sum -4.068 -2.959 13.362 14.278 Atomic orbital electron populations 1.21824 0.96142 1.01186 1.01861 1.21559 0.95583 0.96562 1.01957 1.21191 0.95309 0.95988 0.98506 0.91464 1.21954 1.00862 1.01120 0.97073 1.21366 0.94077 0.94914 1.03035 1.21786 0.92292 0.99991 1.04119 1.20614 0.90181 0.83148 0.74994 1.90618 1.70199 1.31481 1.51067 1.47374 1.07060 1.05791 1.71837 1.20547 0.79210 1.01842 0.97622 1.21821 0.98558 1.02468 0.98077 1.20321 0.87548 0.92612 0.96035 1.43899 0.98876 1.81219 1.08053 1.20227 1.06115 1.34983 0.86092 0.91642 1.26100 0.97296 1.02515 0.95384 1.70830 1.39427 1.18197 1.27169 0.84044 0.75517 0.77540 0.74476 1.22390 1.22876 1.21273 1.22699 0.91136 0.97851 0.90853 1.21883 0.96494 0.86145 0.98766 0.92990 0.92379 0.93160 0.91929 0.92230 0.92767 0.92186 0.92413 0.91181 0.91726 0.89626 0.88184 0.90395 0.92181 0.91212 0.92573 0.93115 0.94735 0.92614 0.94275 0.91034 0.90990 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 37.16 0.36 -1.12 16 2 C -0.12 -1.32 5.40 -26.73 -0.14 -1.46 16 3 C -0.09 -1.13 2.39 -90.62 -0.22 -1.34 16 4 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 5 C -0.15 -2.07 8.70 37.16 0.32 -1.74 16 6 C -0.10 -1.41 3.97 -26.73 -0.11 -1.52 16 7 C -0.14 -2.21 4.01 -27.88 -0.11 -2.32 16 8 C 0.52 9.77 7.67 -10.99 -0.08 9.69 16 9 O -0.55 -12.03 15.42 5.56 0.09 -11.94 16 10 N -0.59 -10.32 2.46 -176.39 -0.43 -10.76 16 11 C 0.13 2.14 5.70 -5.91 -0.03 2.10 16 12 C -0.17 -3.06 5.64 -29.13 -0.16 -3.22 16 13 C 0.16 3.18 5.63 -5.23 -0.03 3.16 16 14 N -0.60 -13.76 2.33 -171.74 -0.40 -14.16 16 15 C -0.35 -9.54 9.55 -15.06 -0.14 -9.68 16 16 H 0.07 1.98 8.06 -52.48 -0.42 1.56 16 17 C -0.01 -0.33 5.14 -17.43 -0.09 -0.42 16 18 N -0.92 -28.13 13.70 55.49 0.76 -27.37 16 19 Si 1.05 25.36 24.43 -169.99 -4.15 21.21 16 20 H -0.30 -6.57 6.75 56.52 0.38 -6.19 16 21 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 22 H -0.29 -6.52 6.41 56.52 0.36 -6.15 16 23 C 0.10 2.03 4.54 -1.53 -0.01 2.02 16 24 C 0.09 1.48 5.06 -4.36 -0.02 1.46 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 31 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.09 1.08 7.36 -51.93 -0.38 0.70 16 36 H 0.10 1.71 5.77 -51.93 -0.30 1.41 16 37 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 38 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 39 H 0.07 1.56 7.91 -51.93 -0.41 1.15 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 42 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 43 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 44 H 0.04 0.77 5.81 -51.93 -0.30 0.47 16 45 H 0.07 1.57 4.75 -51.93 -0.25 1.33 16 46 H 0.07 0.95 6.38 -51.93 -0.33 0.62 16 47 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -31.94 347.85 -7.80 -39.74 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.43 Total: 2.45 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.47 Total: -4.42 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.07 Total: -52.29 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.15 Total: 21.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.94 -7.80 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197519202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.517 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds