Wall clock time and date at job start Tue Mar 31 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47530 * 2 1 4 4 H 1.09001 * 109.46869 * 55.00079 * 3 2 1 5 5 C 1.52998 * 109.46938 * 295.00518 * 3 2 1 6 6 C 1.52998 * 109.46946 * 174.99882 * 3 2 1 7 7 H 1.09001 * 109.47176 * 60.00385 * 6 3 2 8 8 C 1.53004 * 109.46602 * 179.97438 * 6 3 2 9 9 C 1.50695 * 109.47365 * 300.00029 * 6 3 2 10 10 O 1.21279 * 120.00346 * 343.30898 * 9 6 3 11 11 N 1.34779 * 119.99697 * 163.30923 * 9 6 3 12 12 C 1.48217 * 119.96973 * 359.28575 * 11 9 6 13 13 C 1.47143 * 110.34165 * 102.47141 * 12 11 9 14 14 C 1.53796 * 111.84044 * 58.29392 * 13 12 11 15 15 N 1.43463 * 107.96132 * 281.66757 * 14 13 12 16 16 C 1.36942 * 118.93666 * 273.61020 * 15 14 13 17 17 H 1.08000 * 120.00052 * 29.45790 * 16 15 14 18 18 C 1.38809 * 119.99877 * 209.45678 * 16 15 14 19 19 N 1.31619 * 120.00011 * 208.03122 * 18 16 15 20 20 Si 1.86807 * 120.00123 * 28.02923 * 18 16 15 21 21 H 1.48497 * 109.47211 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.46913 * 60.00035 * 20 18 16 23 23 H 1.48508 * 109.47347 * 300.00420 * 20 18 16 24 24 C 1.48850 * 122.12054 * 93.89043 * 15 14 13 25 25 C 1.43624 * 119.96876 * 179.26244 * 11 9 6 26 26 H 1.09003 * 109.47389 * 59.99528 * 1 2 3 27 27 H 1.09000 * 109.47682 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46972 * 300.00075 * 1 2 3 29 29 H 1.09004 * 109.46972 * 239.99925 * 2 1 3 30 30 H 1.09003 * 109.47389 * 120.00472 * 2 1 3 31 31 H 1.08993 * 109.47463 * 59.99515 * 5 3 2 32 32 H 1.08995 * 109.46763 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.46983 * 299.99491 * 5 3 2 34 34 H 1.09003 * 109.46940 * 75.49186 * 8 6 3 35 35 H 1.09003 * 109.47186 * 195.48836 * 8 6 3 36 36 H 1.08999 * 109.47402 * 315.49193 * 8 6 3 37 37 H 1.08999 * 109.32580 * 342.20499 * 12 11 9 38 38 H 1.09005 * 109.18004 * 222.64523 * 12 11 9 39 39 H 1.09002 * 109.00462 * 297.69160 * 13 12 11 40 40 H 1.08993 * 109.00441 * 178.90384 * 13 12 11 41 41 H 1.08999 * 109.76276 * 162.04891 * 14 13 12 42 42 H 1.09004 * 109.80761 * 41.31062 * 14 13 12 43 43 H 0.96995 * 120.00085 * 354.92155 * 19 18 16 44 44 H 1.09005 * 109.48266 * 80.34782 * 24 15 14 45 45 H 1.08994 * 109.48359 * 200.37917 * 24 15 14 46 46 H 1.09001 * 108.87104 * 31.47003 * 25 11 9 47 47 H 1.09000 * 108.87204 * 150.00333 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4442 0.1258 7 1 3.9994 0.9051 -0.7161 8 6 4.0749 2.8867 0.1251 9 6 3.9634 0.7704 1.4134 10 8 3.1425 0.6045 2.2905 11 7 5.2324 0.3521 1.5903 12 6 6.2314 0.5409 0.5117 13 6 7.1093 1.6804 0.8214 14 6 7.8420 1.4908 2.1603 15 7 6.9200 1.7959 3.2162 16 6 6.7876 3.0961 3.6251 17 1 6.9559 3.9019 2.9259 18 6 6.4369 3.3784 4.9381 19 7 5.7871 4.4873 5.2219 20 14 6.8874 2.1846 6.3026 21 1 6.4029 2.7134 7.6029 22 1 8.3628 2.0233 6.3520 23 1 6.2541 0.8678 6.0373 24 6 6.1073 0.7439 3.8858 25 6 5.6155 -0.2757 2.8239 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5489 2.1253 -1.3968 32 1 1.9982 3.1543 -1.3071 33 1 2.0698 1.5875 -2.1491 34 1 3.8724 3.3441 1.0936 35 1 5.1487 2.8923 -0.0620 36 1 3.5669 3.4514 -0.6567 37 1 5.7148 0.7289 -0.4295 38 1 6.8331 -0.3632 0.4187 39 1 6.5083 2.5883 0.8712 40 1 7.8462 1.7873 0.0255 41 1 8.6970 2.1649 2.2112 42 1 8.1805 0.4588 2.2532 43 1 5.6178 5.1417 4.5263 44 1 6.7172 0.2323 4.6305 45 1 5.2479 1.2038 4.3735 46 1 4.7587 -0.8173 3.2248 47 1 6.4185 -0.9852 2.6240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197586124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:53 Heat of formation + Delta-G solvation = -15.426777 kcal Electronic energy + Delta-G solvation = -24818.346288 eV Core-core repulsion = 21615.843218 eV Total energy + Delta-G solvation = -3202.503070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22849 -37.61658 -36.19203 -34.48936 -32.60740 -32.12069 -31.25660 -28.68837 -27.59926 -25.76732 -25.67887 -23.49026 -22.57500 -21.80039 -20.04713 -19.79336 -18.16642 -17.31798 -16.88298 -16.13538 -15.28005 -14.88942 -14.64528 -14.47466 -14.11872 -13.73634 -13.45852 -13.27773 -13.12371 -12.89027 -12.65107 -12.54719 -12.19728 -12.02981 -11.87742 -11.61537 -11.59678 -11.39243 -11.29724 -11.00903 -10.66586 -10.55862 -10.45978 -10.34776 -10.24032 -10.17590 -9.97868 -9.65652 -9.18418 -9.01171 -8.24553 -7.97982 -6.98061 -6.19157 -3.25271 3.12747 3.48587 3.52934 3.57310 3.74768 4.67583 4.68290 4.77844 4.95251 5.02547 5.10956 5.20765 5.41210 5.43272 5.49907 5.54907 5.56414 5.58935 5.63045 5.64589 5.74381 5.76024 5.89014 5.94212 6.01261 6.05378 6.09588 6.12647 6.17802 6.18605 6.24843 6.28078 6.30076 6.45145 6.56613 6.56848 6.60757 6.70708 6.91234 6.94627 7.20246 7.88825 8.16183 8.55267 8.73843 9.10865 9.76645 10.25051 11.17247 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.005937 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.376752 B = 4714.663651 C = 4941.869223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.074 4.074 4 H 0.080 0.920 5 C -0.149 4.149 6 C -0.101 4.101 7 H 0.084 0.916 8 C -0.150 4.150 9 C 0.523 3.477 10 O -0.542 6.542 11 N -0.587 5.587 12 C 0.122 3.878 13 C -0.179 4.179 14 C 0.161 3.839 15 N -0.596 5.596 16 C -0.355 4.355 17 H 0.059 0.941 18 C -0.006 4.006 19 N -0.911 5.911 20 Si 1.037 2.963 21 H -0.297 1.297 22 H -0.295 1.295 23 H -0.270 1.270 24 C 0.118 3.882 25 C 0.099 3.901 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -9.460 -14.340 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.093 4.093 4 H 0.098 0.902 5 C -0.206 4.206 6 C -0.123 4.123 7 H 0.102 0.898 8 C -0.207 4.207 9 C 0.312 3.688 10 O -0.419 6.419 11 N -0.318 5.318 12 C 0.000 4.000 13 C -0.219 4.219 14 C 0.033 3.967 15 N -0.318 5.318 16 C -0.483 4.483 17 H 0.077 0.923 18 C -0.209 4.209 19 N -0.550 5.550 20 Si 0.868 3.132 21 H -0.224 1.224 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.008 4.008 25 C -0.026 4.026 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.652 -9.843 -12.240 16.126 hybrid contribution 0.447 0.445 -1.675 1.790 sum -3.205 -9.398 -13.916 17.095 Atomic orbital electron populations 1.21763 0.96125 1.01048 1.01604 1.21638 0.95863 0.96449 1.02091 1.20965 0.92981 0.96799 0.98537 0.90155 1.21965 1.01223 1.00588 0.96859 1.21321 0.97178 0.97877 0.95884 0.89796 1.21978 1.01667 0.93823 1.03223 1.20435 0.81689 0.77770 0.88942 1.90642 1.50615 1.55984 1.44667 1.47348 1.09085 1.59629 1.15740 1.20767 0.90749 0.98962 0.89546 1.22035 0.99597 0.99630 1.00675 1.20316 0.91700 0.97533 0.87197 1.43927 1.42847 1.04803 1.40265 1.19992 1.50587 0.82746 0.95014 0.92327 1.26142 0.96220 1.00877 0.97622 1.70943 1.34445 1.11687 1.37919 0.84439 0.76533 0.75990 0.76195 1.22448 1.22193 1.19663 1.22877 0.94873 0.89974 0.93056 1.21716 0.99571 0.95466 0.85858 0.92973 0.93290 0.92651 0.92971 0.90688 0.92429 0.92250 0.92977 0.91563 0.91418 0.91668 0.90946 0.91850 0.90412 0.92552 0.93202 0.94915 0.92791 0.94377 0.91156 0.90816 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.15 0.36 -1.34 16 2 C -0.12 -1.61 5.16 -26.73 -0.14 -1.74 16 3 C -0.07 -1.01 1.59 -90.62 -0.14 -1.15 16 4 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 5 C -0.15 -1.60 8.64 37.16 0.32 -1.28 16 6 C -0.10 -1.47 1.47 -91.77 -0.14 -1.61 16 7 H 0.08 1.03 6.50 -51.93 -0.34 0.69 16 8 C -0.15 -2.25 8.88 37.16 0.33 -1.92 16 9 C 0.52 9.62 6.13 -10.99 -0.07 9.56 16 10 O -0.54 -11.89 14.05 5.56 0.08 -11.81 16 11 N -0.59 -10.19 2.46 -176.43 -0.43 -10.62 16 12 C 0.12 1.71 5.09 -5.91 -0.03 1.68 16 13 C -0.18 -2.85 5.34 -29.13 -0.16 -3.00 16 14 C 0.16 3.06 5.63 -5.24 -0.03 3.03 16 15 N -0.60 -13.88 2.23 -171.79 -0.38 -14.26 16 16 C -0.35 -9.85 9.43 -15.06 -0.14 -9.99 16 17 H 0.06 1.75 8.06 -52.49 -0.42 1.33 16 18 C -0.01 -0.16 4.98 -17.43 -0.09 -0.25 16 19 N -0.91 -28.71 13.70 55.49 0.76 -27.95 16 20 Si 1.04 26.15 26.27 -169.99 -4.47 21.69 16 21 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.27 -6.19 4.68 56.52 0.26 -5.93 16 24 C 0.12 2.62 4.36 -1.57 -0.01 2.62 16 25 C 0.10 1.82 5.27 -4.39 -0.02 1.79 16 26 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.18 6.04 -51.93 -0.31 0.87 16 31 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.06 0.63 6.13 -51.93 -0.32 0.31 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 35 H 0.07 1.01 4.71 -51.93 -0.24 0.76 16 36 H 0.06 0.81 5.76 -51.93 -0.30 0.51 16 37 H 0.07 0.86 5.40 -51.93 -0.28 0.58 16 38 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.08 1.46 5.46 -51.93 -0.28 1.18 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 42 H 0.03 0.56 7.59 -51.93 -0.39 0.16 16 43 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 44 H 0.04 0.83 5.70 -51.93 -0.30 0.53 16 45 H 0.07 1.82 6.39 -51.93 -0.33 1.49 16 46 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 47 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -32.49 336.67 -7.37 -39.86 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.05 Total: 1.64 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 0.05 Total: -3.61 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.06 Total: -52.84 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -4.47 Total: 21.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.49 -7.37 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197586124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.430 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds