Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.52993 * 109.47345 * 65.00157 * 3 2 1 6 6 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 7 7 C 1.52997 * 109.46822 * 174.99943 * 6 3 2 8 8 C 1.50703 * 109.46754 * 179.97438 * 7 6 3 9 9 O 1.21276 * 120.00057 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99654 * 179.97438 * 8 7 6 11 11 C 1.46922 * 120.63301 * 359.71867 * 10 8 7 12 12 C 1.53627 * 108.53961 * 126.36854 * 11 10 8 13 13 C 1.53041 * 109.24158 * 54.86101 * 12 11 10 14 14 N 1.46505 * 109.45656 * 178.49011 * 13 12 11 15 15 C 1.36934 * 119.99763 * 275.06336 * 14 13 12 16 16 H 1.07997 * 120.00553 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00063 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99803 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00385 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47100 * 89.99964 * 19 17 15 21 21 H 1.48502 * 109.47184 * 210.00315 * 19 17 15 22 22 H 1.48500 * 109.47059 * 330.00356 * 19 17 15 23 23 C 1.53044 * 109.53625 * 298.50668 * 13 12 11 24 24 C 1.46927 * 120.62519 * 180.02562 * 10 8 7 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09004 * 109.47135 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47179 * 299.99584 * 5 3 2 32 32 H 1.08993 * 109.47639 * 59.99724 * 5 3 2 33 33 H 1.09004 * 109.46746 * 294.99703 * 6 3 2 34 34 H 1.08998 * 109.47205 * 54.99872 * 6 3 2 35 35 H 1.09004 * 109.47264 * 299.99443 * 7 6 3 36 36 H 1.08998 * 109.47289 * 59.99980 * 7 6 3 37 37 H 1.09002 * 109.58895 * 246.20117 * 11 10 8 38 38 H 1.09000 * 109.58539 * 6.63306 * 11 10 8 39 39 H 1.08998 * 109.63394 * 294.86246 * 12 11 10 40 40 H 1.09002 * 109.45646 * 174.74245 * 12 11 10 41 41 H 1.08997 * 109.45109 * 58.52505 * 13 12 11 42 42 H 0.96998 * 120.00106 * 95.06794 * 14 13 12 43 43 H 0.97005 * 120.00171 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.49565 * 301.41754 * 23 13 12 45 45 H 1.08997 * 109.52441 * 181.33496 * 23 13 12 46 46 H 1.08999 * 109.58922 * 353.36711 * 24 10 8 47 47 H 1.09003 * 109.58891 * 113.65744 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8849 -0.2512 8 6 5.5665 2.8867 -0.3744 9 8 6.1770 1.8389 -0.3635 10 7 6.2311 4.0527 -0.4978 11 6 5.5048 5.3297 -0.5199 12 6 6.1018 6.2499 0.5557 13 6 7.6094 6.3808 0.3273 14 7 8.1779 7.2862 1.3289 15 6 8.1598 8.6390 1.1177 16 1 7.7261 9.0386 0.2129 17 6 8.6989 9.4969 2.0664 18 7 9.2280 9.0100 3.1689 19 14 8.6749 11.3424 1.7780 20 1 7.4226 11.9141 2.3348 21 1 9.8444 11.9637 2.4500 22 1 8.7386 11.6164 0.3199 23 6 8.2672 5.0046 0.4521 24 6 7.6952 4.0705 -0.6195 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9990 3.1541 1.3074 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5876 2.1491 33 1 4.0029 0.9835 0.7597 34 1 3.8570 0.8800 -1.0113 35 1 3.6264 3.3457 -1.1366 36 1 3.7723 3.4492 0.6344 37 1 5.6102 5.7932 -1.5008 38 1 4.4501 5.1539 -0.3080 39 1 5.9187 5.8260 1.5430 40 1 5.6372 7.2338 0.4903 41 1 7.7920 6.7815 -0.6698 42 1 8.5672 6.9274 2.1417 43 1 9.6051 9.6095 3.8318 44 1 8.0638 4.5924 1.4405 45 1 9.3439 5.1016 0.3129 46 1 8.0863 3.0637 -0.4732 47 1 7.9753 4.4312 -1.6092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203038776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = -58.180244 kcal Electronic energy + Delta-G solvation = -22604.676738 eV Core-core repulsion = 19400.319738 eV Total energy + Delta-G solvation = -3204.357000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09186 -37.76690 -36.97569 -34.47247 -32.69854 -31.91461 -30.77275 -29.37886 -28.75101 -26.18214 -24.76520 -23.15461 -22.96075 -21.95988 -20.22752 -19.99989 -18.70153 -17.17254 -16.96379 -15.91523 -15.76834 -15.16404 -14.86939 -14.59559 -14.01109 -13.88955 -13.72897 -13.69289 -13.42126 -13.17817 -12.99129 -12.75682 -12.28694 -12.18867 -11.99436 -11.84498 -11.74689 -11.55686 -11.13307 -10.98279 -10.91262 -10.84109 -10.76460 -10.71072 -10.61236 -10.47639 -10.25236 -9.84237 -9.69958 -9.60115 -8.93099 -8.45880 -7.00220 -5.79836 -3.09196 2.74952 3.14413 3.40557 3.45773 3.47674 4.41067 4.55223 4.56763 4.64453 4.82993 4.99025 5.03666 5.14939 5.19976 5.29995 5.32607 5.34319 5.35202 5.41977 5.46097 5.52833 5.55648 5.64745 5.69981 5.72527 5.78741 5.81376 5.87407 5.88961 5.95053 6.01327 6.04284 6.21097 6.22759 6.26369 6.36445 6.39454 6.50639 6.63679 6.88880 7.02594 7.56646 7.65897 8.30165 8.38388 9.49539 10.07211 10.41877 11.42704 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.002995 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.280494 B = 9345.942239 C = 9944.273987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.153 4.153 6 C -0.098 4.098 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.552 6.552 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.179 3.821 14 N -0.725 5.725 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.138 4.138 24 C 0.115 3.885 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.126 -14.596 -7.949 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.210 4.210 6 C -0.136 4.136 7 C -0.181 4.181 8 C 0.301 3.699 9 O -0.431 6.431 10 N -0.341 5.341 11 C -0.017 4.017 12 C -0.192 4.192 13 C 0.069 3.931 14 N -0.365 5.365 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.177 4.177 24 C -0.007 4.007 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.781 -14.948 -7.998 22.491 hybrid contribution 0.102 1.188 0.262 1.221 sum -14.679 -13.760 -7.735 21.555 Atomic orbital electron populations 1.21827 0.96033 1.01395 1.01857 1.21563 0.95683 0.96384 1.02106 1.21204 0.95291 0.96215 0.98469 0.91223 1.21959 1.01179 1.00661 0.97178 1.21399 0.94068 0.94853 1.03313 1.21765 0.92246 0.99935 1.04124 1.20715 0.90237 0.83170 0.75775 1.90657 1.70042 1.31247 1.51145 1.48217 1.07648 1.06318 1.71938 1.21957 0.95760 0.83693 1.00251 1.22750 1.00140 0.98736 0.97563 1.20163 0.90165 0.88919 0.93888 1.42443 1.70321 1.02616 1.21096 1.19227 1.32359 0.82716 1.02794 0.91176 1.24758 1.01361 0.98006 0.96851 1.69666 1.44815 1.33813 1.09752 0.86202 0.77107 0.85611 0.77333 1.21735 1.21782 1.20762 1.22205 1.00680 0.96128 0.98719 1.21602 0.79046 1.01201 0.98900 0.93010 0.92492 0.92861 0.92023 0.91955 0.92419 0.92584 0.92620 0.91223 0.91357 0.89175 0.88706 0.91502 0.90429 0.92192 0.90700 0.93451 0.78267 0.93483 0.91896 0.90632 0.89477 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.90 5.40 -26.73 -0.14 -1.04 16 3 C -0.09 -0.74 2.39 -90.62 -0.22 -0.96 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.15 -1.18 8.70 37.15 0.32 -0.86 16 6 C -0.10 -0.98 3.97 -26.73 -0.11 -1.09 16 7 C -0.14 -1.45 3.80 -27.88 -0.11 -1.55 16 8 C 0.51 7.26 7.70 -10.98 -0.08 7.17 16 9 O -0.55 -9.63 15.39 5.56 0.09 -9.55 16 10 N -0.61 -8.48 2.97 -172.48 -0.51 -8.99 16 11 C 0.11 1.34 6.37 -3.49 -0.02 1.32 16 12 C -0.15 -2.47 5.67 -26.38 -0.15 -2.62 16 13 C 0.18 3.39 2.73 -67.88 -0.19 3.20 16 14 N -0.72 -17.71 5.12 -53.38 -0.27 -17.98 16 15 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 19 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.14 -2.30 5.55 -26.59 -0.15 -2.45 16 24 C 0.12 1.68 6.43 -3.69 -0.02 1.66 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 6.56 -51.93 -0.34 0.10 16 31 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.07 0.74 8.10 -51.93 -0.42 0.31 16 35 H 0.09 0.77 7.93 -51.93 -0.41 0.35 16 36 H 0.09 0.90 6.13 -51.93 -0.32 0.59 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.06 363.84 -8.89 -39.94 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.62 Total: 6.25 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.75 Total: -4.98 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.06 Total: -54.16 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.06 -8.89 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203038776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.238 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds