Wall clock time and date at job start Tue Mar 31 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46622 * 2 1 4 4 H 1.08999 * 109.47082 * 55.00894 * 3 2 1 5 5 C 1.53000 * 109.47447 * 295.00160 * 3 2 1 6 6 C 1.53008 * 109.46536 * 175.00115 * 3 2 1 7 7 H 1.08999 * 109.46798 * 60.00606 * 6 3 2 8 8 C 1.52991 * 109.47367 * 300.00323 * 6 3 2 9 9 C 1.50701 * 109.46572 * 180.02562 * 6 3 2 10 10 O 1.21269 * 120.00409 * 27.44104 * 9 6 3 11 11 N 1.34776 * 119.99714 * 207.16467 * 9 6 3 12 12 C 1.46925 * 120.63440 * 175.15750 * 11 9 6 13 13 C 1.52756 * 109.00997 * 233.58556 * 12 11 9 14 14 C 1.53041 * 109.38630 * 305.58440 * 13 12 11 15 15 N 1.46499 * 109.46302 * 181.25872 * 14 13 12 16 16 C 1.36942 * 119.99594 * 84.93242 * 15 14 13 17 17 H 1.07997 * 119.99905 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00098 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99899 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46985 * 89.99776 * 20 18 16 22 22 H 1.48501 * 109.47211 * 209.99664 * 20 18 16 23 23 H 1.48504 * 109.47341 * 330.00008 * 20 18 16 24 24 C 1.53043 * 109.53478 * 61.23990 * 14 13 12 25 25 C 1.46936 * 120.63027 * 355.43923 * 11 9 6 26 26 H 1.09002 * 109.47263 * 59.99359 * 1 2 3 27 27 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46821 * 299.99380 * 1 2 3 29 29 H 1.09000 * 109.46821 * 240.00620 * 2 1 3 30 30 H 1.08989 * 109.47395 * 120.00432 * 2 1 3 31 31 H 1.08996 * 109.47060 * 60.00360 * 5 3 2 32 32 H 1.08999 * 109.46989 * 180.02562 * 5 3 2 33 33 H 1.08992 * 109.47238 * 300.00405 * 5 3 2 34 34 H 1.09002 * 109.47456 * 306.28494 * 8 6 3 35 35 H 1.08997 * 109.47202 * 66.28377 * 8 6 3 36 36 H 1.08998 * 109.47412 * 186.28598 * 8 6 3 37 37 H 1.09004 * 109.57972 * 353.41983 * 12 11 9 38 38 H 1.08997 * 109.58850 * 113.83847 * 12 11 9 39 39 H 1.09006 * 109.56526 * 185.54585 * 13 12 11 40 40 H 1.09001 * 109.36042 * 65.50040 * 13 12 11 41 41 H 1.08999 * 109.45763 * 301.22115 * 14 13 12 42 42 H 0.96992 * 119.99990 * 264.93657 * 15 14 13 43 43 H 0.97001 * 119.99581 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.49178 * 178.68429 * 24 14 13 45 45 H 1.08996 * 109.52421 * 58.60319 * 24 14 13 46 46 H 1.09002 * 109.58468 * 246.15672 * 25 11 9 47 47 H 1.08997 * 109.58551 * 6.43875 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5649 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9697 0.7603 1.4329 9 6 4.0670 2.8653 0.1263 10 8 3.3539 3.7603 0.5276 11 7 5.3108 3.1406 -0.3139 12 6 5.7773 4.5298 -0.4192 13 6 6.2961 4.7746 -1.8349 14 6 7.3588 3.7270 -2.1747 15 7 7.8790 3.9783 -3.5210 16 6 8.8940 4.8789 -3.7056 17 1 9.3112 5.4034 -2.8587 18 6 9.3874 5.1167 -4.9810 19 7 10.3626 5.9826 -5.1586 20 14 8.6663 4.2088 -6.4457 21 1 7.5360 4.9923 -7.0061 22 1 9.7126 4.0364 -7.4853 23 1 8.1769 2.8761 -6.0101 24 6 6.7357 2.3301 -2.1215 25 6 6.2238 2.0573 -0.7037 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 0.5489 2.1253 -1.3968 32 1 1.9988 3.1542 -1.3074 33 1 2.0697 1.5877 -2.1491 34 1 3.4467 1.2300 2.2660 35 1 3.7052 -0.2961 1.3872 36 1 5.0455 0.8596 1.5770 37 1 4.9507 5.2094 -0.2117 38 1 6.5816 4.7004 0.2964 39 1 6.7346 5.7707 -1.8959 40 1 5.4695 4.6967 -2.5412 41 1 8.1735 3.7890 -1.4533 42 1 7.5046 3.5070 -4.2814 43 1 10.7076 6.1484 -6.0499 44 1 7.4872 1.5864 -2.3864 45 1 5.9051 2.2747 -2.8251 46 1 7.0654 2.0221 -0.0118 47 1 5.6925 1.1059 -0.6815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203091365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:40 Heat of formation + Delta-G solvation = -46.577260 kcal Electronic energy + Delta-G solvation = -23443.113851 eV Core-core repulsion = 20239.259994 eV Total energy + Delta-G solvation = -3203.853857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48634 -37.96744 -36.61304 -34.65327 -32.63913 -31.85154 -30.72983 -29.79874 -29.42745 -25.42418 -24.65911 -24.05766 -22.80929 -22.12619 -20.67646 -19.73663 -18.79281 -17.64542 -17.09841 -15.94862 -15.32788 -15.13043 -14.85598 -14.54068 -14.20179 -14.11146 -13.75092 -13.57787 -13.37151 -13.19144 -12.89917 -12.55237 -12.45658 -12.28171 -12.12662 -11.99376 -11.84670 -11.76273 -11.42693 -11.07788 -11.03377 -10.92600 -10.81180 -10.69619 -10.62045 -10.48153 -10.30532 -9.97532 -9.62210 -9.47641 -8.95259 -8.51677 -7.31114 -5.80217 -3.16186 2.70260 3.07221 3.34441 3.37707 3.42978 4.36474 4.44545 4.55988 4.64497 4.83423 4.86373 4.99465 5.03746 5.09384 5.22925 5.30079 5.34776 5.36459 5.40278 5.47561 5.52111 5.54733 5.59311 5.62654 5.68376 5.77062 5.80080 5.81462 5.83852 5.88138 5.97578 6.00584 6.11316 6.12465 6.23265 6.25484 6.28190 6.44805 6.52075 6.83514 6.93561 7.51409 7.95580 8.26623 8.38852 9.16994 9.89634 10.09216 11.38069 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.003776 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.888170 B = 7414.079454 C = 7814.464819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.073 4.073 4 H 0.080 0.920 5 C -0.152 4.152 6 C -0.110 4.110 7 H 0.092 0.908 8 C -0.143 4.143 9 C 0.521 3.479 10 O -0.546 6.546 11 N -0.607 5.607 12 C 0.113 3.887 13 C -0.150 4.150 14 C 0.184 3.816 15 N -0.749 5.749 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.144 4.144 25 C 0.109 3.891 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.936 -14.070 12.003 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.099 0.901 5 C -0.210 4.210 6 C -0.131 4.131 7 H 0.110 0.890 8 C -0.200 4.200 9 C 0.309 3.691 10 O -0.424 6.424 11 N -0.340 5.340 12 C -0.010 4.010 13 C -0.191 4.191 14 C 0.074 3.926 15 N -0.390 5.390 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.183 4.183 25 C -0.015 4.015 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.091 -13.408 12.232 24.255 hybrid contribution -0.267 -0.520 -1.339 1.461 sum -16.358 -13.928 10.893 24.088 Atomic orbital electron populations 1.21813 0.95836 1.01351 1.02057 1.21645 0.96017 0.96128 1.02066 1.21010 0.92436 0.96160 0.99601 0.90119 1.21923 1.01346 1.01300 0.96391 1.21433 0.97474 0.93682 1.00495 0.88963 1.21788 1.01725 1.00641 0.95870 1.20556 0.80829 0.91013 0.76681 1.90651 1.56163 1.48328 1.47276 1.48209 1.13451 1.07916 1.64444 1.21589 0.99516 0.81806 0.98083 1.22547 0.99901 1.02339 0.94302 1.20132 0.93503 0.90480 0.88442 1.42788 1.42760 1.50646 1.02844 1.19068 1.08777 1.14895 0.94666 0.89175 1.24676 0.98287 0.99056 0.97088 1.69701 1.29149 1.37476 1.21781 0.86552 0.78508 0.79747 0.83701 1.21123 1.21742 1.20374 1.22257 1.00879 0.99575 0.95623 1.21816 0.93282 0.89846 0.96516 0.92453 0.92947 0.92757 0.91995 0.91630 0.92411 0.91936 0.93051 0.91893 0.91247 0.92148 0.89686 0.91777 0.90224 0.92479 0.92548 0.80692 0.93036 0.90448 0.91895 0.91076 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -0.92 5.19 -26.73 -0.14 -1.06 16 3 C -0.07 -0.72 1.62 -90.61 -0.15 -0.87 16 4 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 5 C -0.15 -1.64 8.67 37.16 0.32 -1.32 16 6 C -0.11 -1.10 1.46 -91.77 -0.13 -1.23 16 7 H 0.09 0.83 6.34 -51.93 -0.33 0.50 16 8 C -0.14 -1.17 8.47 37.15 0.31 -0.85 16 9 C 0.52 7.08 5.91 -10.99 -0.06 7.02 16 10 O -0.55 -9.24 14.62 5.57 0.08 -9.16 16 11 N -0.61 -8.10 2.98 -173.03 -0.52 -8.62 16 12 C 0.11 1.67 6.39 -3.94 -0.03 1.64 16 13 C -0.15 -2.57 5.64 -26.84 -0.15 -2.72 16 14 C 0.18 3.32 2.73 -67.89 -0.19 3.14 16 15 N -0.75 -17.09 4.93 -53.38 -0.26 -17.36 16 16 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.05 13.97 55.49 0.78 -28.27 16 20 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 24 C -0.14 -2.03 5.55 -26.61 -0.15 -2.18 16 25 C 0.11 1.23 6.00 -3.71 -0.02 1.21 16 26 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.44 6.32 -51.94 -0.33 0.12 16 31 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 32 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.44 6.67 -51.93 -0.35 0.09 16 36 H 0.06 0.48 7.75 -51.93 -0.40 0.08 16 37 H 0.08 1.33 7.04 -51.93 -0.37 0.97 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 42 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.74 5.26 -51.93 -0.27 0.47 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -31.97 354.75 -7.93 -39.90 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.37 Total: 5.81 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.27 Total: -4.80 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.00 Total: -54.24 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.97 -7.93 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203091365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.681 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds