Wall clock time and date at job start Tue Mar 31 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 H 1.09007 * 109.47172 * 305.00213 * 3 2 1 5 5 C 1.52991 * 109.47247 * 64.99950 * 3 2 1 6 6 C 1.52998 * 109.47260 * 185.00443 * 3 2 1 7 7 H 1.08998 * 109.46753 * 299.99708 * 6 3 2 8 8 C 1.53003 * 109.47114 * 59.99556 * 6 3 2 9 9 C 1.50700 * 109.47573 * 179.97438 * 6 3 2 10 10 O 1.21278 * 119.99719 * 325.24670 * 9 6 3 11 11 N 1.34766 * 120.00243 * 145.51581 * 9 6 3 12 12 C 1.46927 * 120.63007 * 4.86222 * 11 9 6 13 13 C 1.53624 * 108.54516 * 126.36941 * 12 11 9 14 14 C 1.53041 * 109.24235 * 54.85491 * 13 12 11 15 15 N 1.46494 * 109.46169 * 178.49327 * 14 13 12 16 16 C 1.36939 * 120.00167 * 275.06769 * 15 14 13 17 17 H 1.07995 * 119.99862 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99967 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00313 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99716 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47039 * 60.00495 * 20 18 16 22 22 H 1.48501 * 109.46923 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47286 * 300.00110 * 20 18 16 24 24 C 1.53044 * 109.53874 * 298.51452 * 14 13 12 25 25 C 1.46928 * 120.63254 * 185.14563 * 11 9 6 26 26 H 1.09003 * 109.47272 * 60.00200 * 1 2 3 27 27 H 1.08996 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47203 * 300.00092 * 1 2 3 29 29 H 1.09000 * 109.46983 * 240.00395 * 2 1 3 30 30 H 1.08994 * 109.47161 * 119.99513 * 2 1 3 31 31 H 1.09005 * 109.47408 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47392 * 299.99926 * 5 3 2 33 33 H 1.08998 * 109.47080 * 60.00100 * 5 3 2 34 34 H 1.08998 * 109.46834 * 64.82028 * 8 6 3 35 35 H 1.09002 * 109.46632 * 184.82393 * 8 6 3 36 36 H 1.08998 * 109.47382 * 304.81938 * 8 6 3 37 37 H 1.09006 * 109.58920 * 246.19779 * 12 11 9 38 38 H 1.08997 * 109.59138 * 6.62865 * 12 11 9 39 39 H 1.09004 * 109.63195 * 294.86657 * 13 12 11 40 40 H 1.08994 * 109.43623 * 174.72272 * 13 12 11 41 41 H 1.08999 * 109.45045 * 58.52844 * 14 13 12 42 42 H 0.97011 * 120.00282 * 95.07070 * 15 14 13 43 43 H 0.96993 * 120.00479 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.49957 * 301.41133 * 24 14 13 45 45 H 1.08997 * 109.49926 * 181.31462 * 24 14 13 46 46 H 1.08999 * 109.58720 * 353.36744 * 25 11 9 47 47 H 1.08997 * 109.58803 * 113.65818 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 1 3.9994 0.9054 0.7160 8 6 3.9695 0.7603 -1.4332 9 6 4.0671 2.8652 -0.1265 10 8 3.4095 3.7406 -0.6480 11 7 5.2496 3.1622 0.4477 12 6 6.1095 2.0983 0.9839 13 6 7.5070 2.2394 0.3616 14 6 8.0299 3.6558 0.6119 15 7 9.3773 3.7847 0.0516 16 6 10.4647 3.3932 0.7862 17 1 10.3288 2.9890 1.7784 18 6 11.7414 3.5149 0.2551 19 7 11.9069 4.0069 -0.9544 20 14 13.2245 2.9802 1.2569 21 1 13.1075 1.5360 1.5823 22 1 14.4627 3.2121 0.4706 23 1 13.2826 3.7678 2.5145 24 6 7.1001 4.6704 -0.0576 25 6 5.7006 4.5564 0.5550 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.9989 3.1541 1.3075 32 1 0.5489 2.1253 1.3969 33 1 2.0699 1.5876 2.1491 34 1 3.6070 1.3468 -2.2774 35 1 5.0558 0.6851 -1.4827 36 1 3.5341 -0.2382 -1.4707 37 1 6.1777 2.1949 2.0676 38 1 5.6904 1.1254 0.7274 39 1 7.4501 2.0569 -0.7115 40 1 8.1823 1.5163 0.8188 41 1 8.0630 3.8462 1.6846 42 1 9.4994 4.1474 -0.8398 43 1 12.7990 4.0923 -1.3254 44 1 7.0471 4.4651 -1.1268 45 1 7.4858 5.6774 0.1012 46 1 5.0115 5.2059 0.0153 47 1 5.7337 4.8501 1.6042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203091366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:43 Heat of formation + Delta-G solvation = -50.103954 kcal Electronic energy + Delta-G solvation = -23315.485887 eV Core-core repulsion = 20111.479101 eV Total energy + Delta-G solvation = -3204.006786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40586 -37.85149 -36.56123 -34.48075 -32.59294 -31.76613 -30.60052 -29.49296 -29.18976 -25.32472 -24.62913 -23.89497 -22.99997 -22.24534 -20.59405 -19.76609 -18.47707 -17.27784 -17.03052 -15.87062 -15.44561 -15.03469 -14.82096 -14.27473 -14.10166 -14.00073 -13.67229 -13.52475 -13.43239 -13.26590 -12.86856 -12.55253 -12.36596 -12.04788 -11.98848 -11.88245 -11.82667 -11.56150 -11.32873 -10.99000 -10.91099 -10.84545 -10.78939 -10.65230 -10.59033 -10.44226 -10.27477 -9.83682 -9.68369 -9.45585 -8.91750 -8.44129 -6.99609 -5.79118 -3.08496 2.75532 3.14005 3.41402 3.45981 3.47173 4.42327 4.49684 4.56180 4.68002 4.88929 4.98760 5.05609 5.19719 5.29175 5.34156 5.35402 5.36851 5.41017 5.43238 5.49750 5.53157 5.64150 5.66888 5.70294 5.72687 5.78213 5.82133 5.86302 5.94119 5.98016 6.00966 6.09601 6.22252 6.24632 6.27636 6.37696 6.40776 6.51583 6.64958 6.89921 7.03489 7.58148 7.65977 8.32196 8.39144 9.50161 10.07937 10.42582 11.43399 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.003349 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.230844 B = 8358.041088 C = 8657.555045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.075 4.075 4 H 0.081 0.919 5 C -0.151 4.151 6 C -0.108 4.108 7 H 0.091 0.909 8 C -0.145 4.145 9 C 0.522 3.478 10 O -0.550 6.550 11 N -0.607 5.607 12 C 0.105 3.895 13 C -0.150 4.150 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.138 4.138 25 C 0.115 3.885 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 -7.423 3.427 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.100 0.900 5 C -0.208 4.208 6 C -0.130 4.130 7 H 0.109 0.891 8 C -0.203 4.203 9 C 0.310 3.690 10 O -0.428 6.428 11 N -0.339 5.339 12 C -0.019 4.019 13 C -0.191 4.191 14 C 0.069 3.931 15 N -0.365 5.365 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.177 4.177 25 C -0.008 4.008 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.506 -6.989 3.275 21.910 hybrid contribution 1.154 -0.256 0.263 1.211 sum -19.352 -7.245 3.538 20.964 Atomic orbital electron populations 1.21812 0.95852 1.01365 1.02001 1.21666 0.95954 0.96120 1.02203 1.21017 0.92621 0.96282 0.99459 0.90042 1.21905 1.01357 1.00924 0.96582 1.21421 0.97196 0.93641 1.00697 0.89133 1.21816 1.02008 1.00656 0.95789 1.20556 0.80424 0.90782 0.77196 1.90646 1.57293 1.49657 1.45204 1.48203 1.18928 1.08117 1.58685 1.22003 0.91665 0.89957 0.98237 1.22744 0.93526 1.01920 1.00898 1.20157 0.85562 0.90964 0.96407 1.42435 0.99573 1.75959 1.18485 1.19185 0.85433 1.34669 0.97897 0.91235 1.24751 0.97495 1.01914 0.96746 1.69648 1.21716 1.51084 1.15624 0.86281 0.82552 0.78320 0.79097 1.21269 1.21709 1.21271 1.22192 0.93909 1.00964 1.00652 1.21597 0.96184 0.82167 1.00816 0.92731 0.92931 0.92530 0.91433 0.91981 0.92325 0.92360 0.92985 0.91902 0.91896 0.91122 0.91596 0.90269 0.92194 0.90712 0.93482 0.78267 0.93426 0.91886 0.90667 0.89487 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.95 5.19 -26.73 -0.14 -1.09 16 3 C -0.07 -0.75 1.66 -90.62 -0.15 -0.90 16 4 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 5 C -0.15 -1.50 8.69 37.15 0.32 -1.17 16 6 C -0.11 -1.17 1.52 -91.77 -0.14 -1.31 16 7 H 0.09 0.86 6.18 -51.93 -0.32 0.54 16 8 C -0.15 -1.47 8.89 37.16 0.33 -1.14 16 9 C 0.52 7.44 5.66 -10.99 -0.06 7.37 16 10 O -0.55 -9.55 15.12 5.56 0.08 -9.47 16 11 N -0.61 -8.52 2.97 -172.50 -0.51 -9.03 16 12 C 0.10 1.34 6.19 -3.48 -0.02 1.32 16 13 C -0.15 -2.48 5.67 -26.39 -0.15 -2.63 16 14 C 0.18 3.41 2.73 -67.89 -0.19 3.23 16 15 N -0.72 -17.74 5.12 -53.39 -0.27 -18.02 16 16 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.14 -2.32 5.55 -26.61 -0.15 -2.46 16 25 C 0.12 1.68 6.44 -3.71 -0.02 1.66 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 29 H 0.07 0.50 6.08 -51.93 -0.32 0.18 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.71 6.82 -51.93 -0.35 0.36 16 32 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.67 7.96 -51.93 -0.41 0.25 16 36 H 0.07 0.57 6.08 -51.93 -0.32 0.25 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.85 5.37 -51.93 -0.28 0.57 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -30.87 358.46 -8.23 -39.10 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.39 Total: 7.19 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.25 Total: -4.98 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.06 Total: -54.28 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.87 -8.23 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203091366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.999 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds