Wall clock time and date at job start Tue Mar 31 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.09000 * 109.46927 * 304.99940 * 3 2 1 5 5 C 1.53000 * 109.47445 * 65.00066 * 3 2 1 6 6 C 1.53004 * 109.47195 * 184.99898 * 3 2 1 7 7 C 1.50700 * 109.47208 * 174.99698 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6 11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7 12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9 13 13 C 1.53004 * 109.45947 * 178.48679 * 12 11 10 14 14 N 1.46496 * 109.47046 * 295.06884 * 13 12 11 15 15 C 1.36945 * 120.00100 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99798 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99911 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00316 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99590 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47316 * 60.00175 * 19 17 15 21 21 H 1.48499 * 109.46808 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47370 * 299.99862 * 19 17 15 23 23 C 1.53037 * 109.53606 * 298.50541 * 12 11 10 24 24 C 1.46924 * 120.62813 * 179.72946 * 9 7 6 25 25 H 1.09002 * 109.46793 * 300.00360 * 1 2 3 26 26 H 1.09001 * 109.46944 * 60.00119 * 1 2 3 27 27 H 1.08989 * 109.47473 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46995 * 239.99392 * 2 1 3 29 29 H 1.09001 * 109.46944 * 119.99880 * 2 1 3 30 30 H 1.09000 * 109.47161 * 60.00017 * 5 3 2 31 31 H 1.09003 * 109.47289 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46667 * 299.99759 * 5 3 2 33 33 H 1.09009 * 109.46730 * 54.99604 * 6 3 2 34 34 H 1.08998 * 109.46846 * 295.00148 * 6 3 2 35 35 H 1.09000 * 109.59076 * 246.20663 * 10 9 7 36 36 H 1.09000 * 109.58577 * 6.63206 * 10 9 7 37 37 H 1.08990 * 109.63928 * 294.86618 * 11 10 9 38 38 H 1.09006 * 109.45894 * 174.74079 * 11 10 9 39 39 H 1.08996 * 109.45315 * 58.52100 * 12 11 10 40 40 H 1.09010 * 109.46819 * 55.06429 * 13 12 11 41 41 H 1.08998 * 109.47523 * 175.06112 * 13 12 11 42 42 H 0.96999 * 120.00610 * 359.97438 * 14 13 12 43 43 H 0.97006 * 120.00180 * 179.97438 * 18 17 15 44 44 H 1.09008 * 109.50055 * 301.41274 * 23 12 11 45 45 H 1.08995 * 109.52388 * 181.33998 * 23 12 11 46 46 H 1.09006 * 109.58932 * 353.36359 * 24 9 7 47 47 H 1.08998 * 109.59450 * 113.65039 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0572 2.8632 -0.2493 8 8 3.2661 3.7825 -0.2384 9 7 5.3758 3.1102 -0.3781 10 6 6.3466 2.0074 -0.3873 11 6 7.2142 2.1310 -1.6491 12 6 7.8459 3.5243 -1.6923 13 6 8.7413 3.6399 -2.9276 14 7 9.8643 2.7071 -2.8057 15 6 10.8042 2.6336 -3.7990 16 1 10.7172 3.2629 -4.6724 17 6 11.8685 1.7501 -3.6833 18 7 11.9747 0.9835 -2.6188 19 14 13.1501 1.6493 -5.0386 20 1 13.8000 2.9741 -5.2049 21 1 14.1751 0.6377 -4.6763 22 1 12.4945 1.2563 -6.3117 23 6 6.7439 4.5839 -1.7603 24 6 5.8704 4.4878 -0.5055 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0700 1.5875 2.1492 31 1 1.9984 3.1544 1.3071 32 1 0.5490 2.1253 1.3968 33 1 3.8571 0.8798 -1.0113 34 1 4.0030 0.9834 0.7597 35 1 6.9767 2.0677 0.5001 36 1 5.8172 1.0547 -0.3981 37 1 6.5960 1.9842 -2.5346 38 1 8.0000 1.3759 -1.6248 39 1 8.4441 3.6796 -0.7944 40 1 8.1630 3.3979 -3.8194 41 1 9.1217 4.6583 -3.0066 42 1 9.9426 2.1421 -2.0212 43 1 12.7183 0.3658 -2.5381 44 1 6.1299 4.4141 -2.6449 45 1 7.1943 5.5749 -1.8151 46 1 5.0267 5.1723 -0.5944 47 1 6.4603 4.7472 0.3736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205106909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:19 Heat of formation + Delta-G solvation = -56.253857 kcal Electronic energy + Delta-G solvation = -22721.321406 eV Core-core repulsion = 19517.047941 eV Total energy + Delta-G solvation = -3204.273465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33769 -38.02503 -36.38860 -34.91088 -32.91245 -31.53837 -30.50723 -30.29371 -27.97490 -26.45441 -24.45813 -23.49863 -23.14932 -21.69870 -20.46442 -19.92408 -18.77576 -17.30762 -16.86486 -16.04271 -15.67543 -15.13667 -14.78372 -14.44377 -14.23288 -14.03828 -13.80011 -13.71138 -13.54067 -13.15338 -12.78628 -12.53925 -12.40558 -12.28020 -12.11791 -12.00182 -11.72797 -11.52967 -11.17451 -11.01265 -10.94291 -10.82933 -10.80980 -10.73423 -10.42720 -10.30548 -10.27537 -10.01071 -9.65192 -9.59918 -8.87629 -8.57452 -6.92470 -5.77898 -3.05947 2.63349 3.00651 3.43315 3.47730 3.48651 4.39523 4.56595 4.58225 4.68430 4.83847 4.92156 5.03834 5.07848 5.11482 5.20449 5.28846 5.32831 5.38021 5.46268 5.49669 5.52658 5.55518 5.59982 5.65617 5.76927 5.81780 5.85260 5.87326 5.95416 5.98756 6.00581 6.10390 6.19329 6.23358 6.28042 6.33045 6.45480 6.48546 6.64944 6.80715 6.91774 7.42872 7.68960 8.19020 8.41664 9.52703 10.10843 10.45622 11.45072 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.002996 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.125295 B = 9344.388631 C = 9968.353622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.153 4.153 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.547 6.547 9 N -0.610 5.610 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.094 4.094 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.125 4.125 24 C 0.112 3.888 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 0.078 7.939 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.095 4.095 4 H 0.095 0.905 5 C -0.210 4.210 6 C -0.178 4.178 7 C 0.304 3.696 8 O -0.425 6.425 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.163 4.163 12 C -0.113 4.113 13 C 0.030 3.970 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.870 0.589 7.795 21.353 hybrid contribution 1.045 -0.380 -0.549 1.240 sum -18.826 0.208 7.247 20.173 Atomic orbital electron populations 1.21803 0.95808 1.01383 1.02023 1.21600 0.96106 0.96164 1.01990 1.20920 0.92843 0.95912 0.99791 0.90487 1.21987 1.01006 1.02131 0.95906 1.21808 0.97558 0.94283 1.04142 1.20687 0.81625 0.91654 0.75658 1.90630 1.54225 1.46764 1.50888 1.48219 1.06104 1.07962 1.72043 1.21973 0.91242 0.89161 0.99422 1.21999 0.99183 0.98581 0.96544 1.21301 0.95690 0.93995 1.00275 1.20671 0.88765 0.93560 0.93967 1.42369 1.25626 1.45809 1.23824 1.19194 1.01685 1.17470 0.98654 0.91328 1.24720 0.99085 0.99282 0.97914 1.69638 1.32812 1.27522 1.28413 0.86268 0.81351 0.77203 0.81379 1.21303 1.21689 1.21300 1.21903 0.97091 0.99786 0.97623 1.21596 0.98440 0.82956 0.98013 0.92467 0.92753 0.92927 0.91943 0.91967 0.93506 0.90777 0.92848 0.88841 0.89010 0.91132 0.89911 0.91787 0.89376 0.91015 0.96455 0.96392 0.78281 0.93488 0.91656 0.90738 0.89339 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.93 5.40 -26.73 -0.14 -1.08 16 3 C -0.08 -0.72 2.04 -90.62 -0.18 -0.90 16 4 H 0.08 0.85 7.95 -51.93 -0.41 0.43 16 5 C -0.15 -1.50 8.69 37.16 0.32 -1.18 16 6 C -0.14 -1.32 3.52 -27.88 -0.10 -1.42 16 7 C 0.51 6.54 7.41 -10.98 -0.08 6.46 16 8 O -0.55 -8.49 13.38 5.55 0.07 -8.42 16 9 N -0.61 -7.51 2.97 -172.51 -0.51 -8.02 16 10 C 0.10 1.19 6.37 -3.49 -0.02 1.17 16 11 C -0.12 -1.78 5.26 -26.39 -0.14 -1.92 16 12 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 13 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 14 N -0.73 -18.13 5.32 -59.91 -0.32 -18.45 16 15 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.41 5.50 -17.44 -0.10 -0.50 16 18 N -0.94 -27.85 13.06 55.49 0.72 -27.13 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C -0.13 -1.64 5.36 -26.61 -0.14 -1.78 16 24 C 0.11 1.39 6.43 -3.71 -0.02 1.37 16 25 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.34 8.14 -51.94 -0.42 -0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 32 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 33 H 0.09 0.81 7.70 -51.92 -0.40 0.41 16 34 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.77 5.93 -51.93 -0.31 0.47 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 9.82 6.84 -40.82 -0.28 9.54 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -31.19 360.66 -8.82 -40.02 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.58 Total: 5.15 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.62 Total: -5.86 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.11 Total: -53.60 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.19 -8.82 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205106909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.238 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds