Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.09000 * 109.46927 * 304.99940 * 3 2 1 5 5 C 1.53000 * 109.47445 * 65.00066 * 3 2 1 6 6 C 1.53004 * 109.47195 * 184.99898 * 3 2 1 7 7 C 1.50700 * 109.47208 * 174.99698 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.46921 * 120.63392 * 359.43977 * 9 7 6 11 11 C 1.53624 * 108.54016 * 126.36873 * 10 9 7 12 12 C 1.53041 * 109.23819 * 54.86424 * 11 10 9 13 13 C 1.53004 * 109.45947 * 178.48679 * 12 11 10 14 14 N 1.46496 * 109.47046 * 295.06884 * 13 12 11 15 15 C 1.36945 * 120.00100 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99798 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99911 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00316 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99590 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47316 * 60.00175 * 19 17 15 21 21 H 1.48499 * 109.46808 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47370 * 299.99862 * 19 17 15 23 23 C 1.53037 * 109.53606 * 298.50541 * 12 11 10 24 24 C 1.46924 * 120.62813 * 179.72946 * 9 7 6 25 25 H 1.09002 * 109.46793 * 300.00360 * 1 2 3 26 26 H 1.09001 * 109.46944 * 60.00119 * 1 2 3 27 27 H 1.08989 * 109.47473 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46995 * 239.99392 * 2 1 3 29 29 H 1.09001 * 109.46944 * 119.99880 * 2 1 3 30 30 H 1.09000 * 109.47161 * 60.00017 * 5 3 2 31 31 H 1.09003 * 109.47289 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46667 * 299.99759 * 5 3 2 33 33 H 1.09009 * 109.46730 * 54.99604 * 6 3 2 34 34 H 1.08998 * 109.46846 * 295.00148 * 6 3 2 35 35 H 1.09000 * 109.59076 * 246.20663 * 10 9 7 36 36 H 1.09000 * 109.58577 * 6.63206 * 10 9 7 37 37 H 1.08990 * 109.63928 * 294.86618 * 11 10 9 38 38 H 1.09006 * 109.45894 * 174.74079 * 11 10 9 39 39 H 1.08996 * 109.45315 * 58.52100 * 12 11 10 40 40 H 1.09010 * 109.46819 * 55.06429 * 13 12 11 41 41 H 1.08998 * 109.47523 * 175.06112 * 13 12 11 42 42 H 0.96999 * 120.00610 * 359.97438 * 14 13 12 43 43 H 0.97006 * 120.00180 * 179.97438 * 18 17 15 44 44 H 1.09008 * 109.50055 * 301.41274 * 23 12 11 45 45 H 1.08995 * 109.52388 * 181.33998 * 23 12 11 46 46 H 1.09006 * 109.58932 * 353.36359 * 24 9 7 47 47 H 1.08998 * 109.59450 * 113.65039 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0572 2.8632 -0.2493 8 8 3.2661 3.7825 -0.2384 9 7 5.3758 3.1102 -0.3781 10 6 6.3466 2.0074 -0.3873 11 6 7.2142 2.1310 -1.6491 12 6 7.8459 3.5243 -1.6923 13 6 8.7413 3.6399 -2.9276 14 7 9.8643 2.7071 -2.8057 15 6 10.8042 2.6336 -3.7990 16 1 10.7172 3.2629 -4.6724 17 6 11.8685 1.7501 -3.6833 18 7 11.9747 0.9835 -2.6188 19 14 13.1501 1.6493 -5.0386 20 1 13.8000 2.9741 -5.2049 21 1 14.1751 0.6377 -4.6763 22 1 12.4945 1.2563 -6.3117 23 6 6.7439 4.5839 -1.7603 24 6 5.8704 4.4878 -0.5055 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0700 1.5875 2.1492 31 1 1.9984 3.1544 1.3071 32 1 0.5490 2.1253 1.3968 33 1 3.8571 0.8798 -1.0113 34 1 4.0030 0.9834 0.7597 35 1 6.9767 2.0677 0.5001 36 1 5.8172 1.0547 -0.3981 37 1 6.5960 1.9842 -2.5346 38 1 8.0000 1.3759 -1.6248 39 1 8.4441 3.6796 -0.7944 40 1 8.1630 3.3979 -3.8194 41 1 9.1217 4.6583 -3.0066 42 1 9.9426 2.1421 -2.0212 43 1 12.7183 0.3658 -2.5381 44 1 6.1299 4.4141 -2.6449 45 1 7.1943 5.5749 -1.8151 46 1 5.0267 5.1723 -0.5944 47 1 6.4603 4.7472 0.3736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205106909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = -73.847291 kcal Electronic energy + Delta-G solvation = -22722.084315 eV Core-core repulsion = 19517.047941 eV Total energy + Delta-G solvation = -3205.036374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33616 -39.14126 -37.24003 -36.48067 -34.48680 -32.71313 -31.91586 -31.30333 -28.92806 -27.82657 -25.66646 -24.78026 -24.24879 -23.07923 -21.55069 -20.82588 -19.80275 -19.13554 -18.02312 -16.96747 -16.68938 -16.61882 -15.89869 -15.66139 -15.45367 -15.31789 -15.07443 -14.88155 -14.64536 -14.24314 -13.96149 -13.79496 -13.60403 -13.29879 -13.12575 -12.92033 -12.77853 -12.74712 -12.64547 -12.26838 -12.21582 -12.12458 -11.95140 -11.73825 -11.68104 -11.52671 -11.40643 -11.37340 -11.30846 -10.91045 -10.58995 -9.60813 -8.97783 -7.94447 -5.22377 1.47905 1.50243 1.56453 1.66684 2.05986 2.56683 3.38819 3.53695 3.76444 3.79029 3.88382 3.92182 4.00948 4.12107 4.24165 4.30771 4.39829 4.44751 4.46166 4.60164 4.62621 4.68457 4.73557 4.75853 4.82391 4.85045 4.86877 4.92276 4.97712 5.05476 5.07689 5.16204 5.17248 5.20188 5.25756 5.30884 5.34485 5.47723 5.52626 5.54490 5.59135 5.64815 6.28474 6.46183 7.21894 7.35269 8.11271 8.35964 9.28657 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.002996 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.125295 B = 9344.388631 C = 9968.353622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.074 4.074 4 H 0.056 0.944 5 C -0.150 4.150 6 C -0.135 4.135 7 C 0.510 3.490 8 O -0.579 6.579 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.120 4.120 12 C -0.084 4.084 13 C 0.157 3.843 14 N -0.741 5.741 15 C -0.248 4.248 16 H 0.071 0.929 17 C -0.072 4.072 18 N -0.966 5.966 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.279 1.279 23 C -0.115 4.115 24 C 0.114 3.886 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.377 0.623 43 H 0.252 0.748 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.100 -0.566 8.195 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.207 4.207 6 C -0.174 4.174 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.158 4.158 12 C -0.103 4.103 13 C 0.030 3.970 14 N -0.385 5.385 15 C -0.380 4.380 16 H 0.089 0.911 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.205 1.205 23 C -0.153 4.153 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.209 0.791 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.435 -0.034 8.039 21.959 hybrid contribution 1.170 -0.116 -0.647 1.341 sum -19.265 -0.150 7.393 20.636 Atomic orbital electron populations 1.21815 0.95628 1.01951 1.01755 1.21568 0.96267 0.94788 1.02772 1.20888 0.92836 0.96861 0.98701 0.92555 1.21932 1.01390 1.00703 0.96638 1.21874 0.97554 0.92288 1.05715 1.21270 0.81294 0.92660 0.74766 1.90624 1.54968 1.48081 1.52324 1.48304 1.06318 1.08044 1.71743 1.21977 0.90978 0.90054 0.98002 1.21891 0.98824 0.97013 0.98065 1.21186 0.95600 0.95675 0.97828 1.20811 0.88000 0.92156 0.95989 1.42537 1.26426 1.46534 1.22978 1.19571 1.02228 1.16999 0.99211 0.91145 1.25505 1.01254 0.99456 1.00235 1.69783 1.33400 1.28328 1.30177 0.85254 0.78748 0.77138 0.78870 1.20604 1.21963 1.20529 1.21800 0.96228 0.99417 0.97900 1.21551 0.98077 0.83270 0.97919 0.92495 0.93332 0.91928 0.91395 0.90883 0.92321 0.93408 0.92327 0.87455 0.86875 0.90175 0.87265 0.92307 0.91592 0.91295 0.96874 0.96593 0.79062 0.93923 0.92248 0.89756 0.89980 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.27 16 2 C -0.12 -1.53 5.40 30.59 0.17 -1.36 16 3 C -0.07 -1.29 2.04 -10.79 -0.02 -1.31 16 4 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 5 C -0.15 -2.76 8.69 71.98 0.63 -2.14 16 6 C -0.13 -2.27 3.52 29.85 0.11 -2.16 16 7 C 0.51 12.26 7.41 87.66 0.65 12.91 16 8 O -0.58 -17.84 13.38 -3.04 -0.04 -17.88 16 9 N -0.61 -14.01 2.97 -818.07 -2.43 -16.44 16 10 C 0.11 2.31 6.37 86.51 0.55 2.86 16 11 C -0.12 -3.30 5.26 30.82 0.16 -3.14 16 12 C -0.08 -2.52 2.19 -10.77 -0.02 -2.54 16 13 C 0.16 6.17 5.65 86.38 0.49 6.66 16 14 N -0.74 -36.96 5.32 -343.44 -1.83 -38.79 16 15 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 16 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 18 N -0.97 -57.95 13.06 21.65 0.28 -57.66 16 19 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C -0.11 -2.87 5.36 30.67 0.16 -2.71 16 24 C 0.11 2.68 6.43 86.36 0.56 3.24 16 25 H 0.06 0.72 6.57 -2.39 -0.02 0.70 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.15 5.95 -2.39 -0.01 1.14 16 32 H 0.06 0.99 6.57 -2.38 -0.02 0.97 16 33 H 0.11 1.54 7.70 -2.38 -0.02 1.52 16 34 H 0.11 1.45 7.93 -2.39 -0.02 1.43 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.69 5.93 -2.39 -0.01 1.68 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.14 7.15 -2.38 -0.02 2.13 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.38 19.55 6.84 -92.71 -0.63 18.92 16 43 H 0.25 14.67 8.31 -92.70 -0.77 13.89 16 44 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 2.08 7.01 -2.38 -0.02 2.06 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -66.75 360.66 3.73 -63.02 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.29 Total: 27.56 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.42 Total: -7.58 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.97 Total: -112.89 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.04 Total: -17.88 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.75 3.73 -63.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205106909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.828 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds