Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08999 * 109.47309 * 54.99473 * 3 2 1 5 5 C 1.53003 * 109.46907 * 294.99769 * 3 2 1 6 6 C 1.52992 * 109.47148 * 174.99761 * 3 2 1 7 7 C 1.50700 * 109.47257 * 184.99859 * 6 3 2 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 3 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 3 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.53626 * 108.53906 * 126.36585 * 10 9 7 12 12 C 1.53041 * 109.24183 * 54.85853 * 11 10 9 13 13 C 1.52998 * 109.46043 * 178.48489 * 12 11 10 14 14 N 1.46496 * 109.47341 * 295.06624 * 13 12 11 15 15 C 1.36941 * 120.00175 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99964 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99744 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00194 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46973 * 90.00539 * 19 17 15 21 21 H 1.48492 * 109.47291 * 210.00621 * 19 17 15 22 22 H 1.48499 * 109.47252 * 330.00704 * 19 17 15 23 23 C 1.53036 * 109.53807 * 298.50777 * 12 11 10 24 24 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 25 25 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46881 * 300.00419 * 1 2 3 27 27 H 1.09003 * 109.46873 * 59.99943 * 1 2 3 28 28 H 1.09002 * 109.47294 * 239.99950 * 2 1 3 29 29 H 1.08998 * 109.46855 * 119.99575 * 2 1 3 30 30 H 1.08998 * 109.47147 * 60.00317 * 5 3 2 31 31 H 1.09005 * 109.46613 * 180.02562 * 5 3 2 32 32 H 1.08993 * 109.47263 * 299.99732 * 5 3 2 33 33 H 1.09004 * 109.47330 * 64.99881 * 6 3 2 34 34 H 1.08997 * 109.47279 * 305.00368 * 6 3 2 35 35 H 1.08998 * 109.58645 * 246.19910 * 10 9 7 36 36 H 1.09001 * 109.58579 * 6.63067 * 10 9 7 37 37 H 1.08990 * 109.63926 * 294.86483 * 11 10 9 38 38 H 1.09009 * 109.45677 * 174.73785 * 11 10 9 39 39 H 1.09009 * 109.44893 * 58.52020 * 12 11 10 40 40 H 1.09000 * 109.46928 * 55.07061 * 13 12 11 41 41 H 1.09002 * 109.46949 * 175.06508 * 13 12 11 42 42 H 0.97006 * 119.99888 * 0.02562 * 14 13 12 43 43 H 0.96998 * 119.99812 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.49825 * 301.41219 * 23 12 11 45 45 H 1.09001 * 109.52568 * 181.32976 * 23 12 11 46 46 H 1.09007 * 109.58781 * 353.37617 * 24 9 7 47 47 H 1.08998 * 109.58580 * 113.65434 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.0570 2.8634 0.2493 8 8 3.2660 3.7827 0.2383 9 7 5.3762 3.1109 0.3719 10 6 6.3461 2.0074 0.3930 11 6 7.4101 2.2716 -0.6832 12 6 8.0261 3.6538 -0.4547 13 6 9.1131 3.9067 -1.5012 14 7 10.2097 2.9550 -1.3062 15 6 11.3018 2.9902 -2.1317 16 1 11.3545 3.7193 -2.9267 17 6 12.3405 2.0880 -1.9472 18 7 13.3900 2.1215 -2.7409 19 14 12.2490 0.8265 -0.5726 20 1 11.5967 -0.4086 -1.0769 21 1 13.6207 0.5056 -0.1031 22 1 11.4566 1.3797 0.5550 23 6 6.9401 4.7249 -0.5784 24 6 5.8713 4.4889 0.4927 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5490 2.1252 -1.3970 31 1 1.9991 3.1541 -1.3076 32 1 2.0700 1.5875 -2.1491 33 1 4.0030 0.9836 -0.7596 34 1 3.8570 0.8801 1.0113 35 1 6.8192 1.9554 1.3736 36 1 5.8354 1.0680 0.1810 37 1 6.9491 2.2374 -1.6702 38 1 8.1885 1.5112 -0.6186 39 1 8.4651 3.6952 0.5422 40 1 8.6937 3.7783 -2.4991 41 1 9.4911 4.9234 -1.3941 42 1 10.1618 2.2994 -0.5929 43 1 14.1160 1.4914 -2.6117 44 1 6.4835 4.6677 -1.5665 45 1 7.3834 5.7110 -0.4391 46 1 5.0472 5.1873 0.3466 47 1 6.3040 4.6363 1.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205106910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = -51.878280 kcal Electronic energy + Delta-G solvation = -22848.559177 eV Core-core repulsion = 19644.475451 eV Total energy + Delta-G solvation = -3204.083726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43297 -38.14640 -36.46451 -35.09250 -32.96612 -31.64735 -30.70015 -30.59127 -28.09564 -26.72931 -24.52039 -23.44902 -23.23202 -21.54191 -20.58868 -19.99276 -18.92844 -17.69407 -17.07050 -16.13167 -15.70463 -15.16613 -14.74007 -14.66800 -14.43996 -14.13195 -14.03927 -13.78247 -13.36677 -13.11551 -13.07404 -12.60299 -12.53814 -12.40527 -12.17421 -11.97518 -11.94001 -11.57560 -11.40761 -11.29633 -11.00632 -10.93775 -10.84975 -10.79037 -10.56080 -10.42824 -10.25723 -10.10145 -9.69617 -9.60005 -8.91618 -8.67636 -7.24497 -5.78513 -3.13891 2.55137 2.90775 3.33726 3.35258 3.42294 4.31185 4.50480 4.56456 4.62543 4.72828 4.81289 4.88210 4.97188 5.01783 5.09189 5.21925 5.24197 5.26200 5.40078 5.42673 5.45016 5.47464 5.53715 5.55139 5.70566 5.71061 5.73266 5.80566 5.82215 5.83526 5.89870 5.95990 6.06051 6.11201 6.18380 6.28133 6.30896 6.33094 6.50715 6.67962 6.78670 7.32976 7.98250 8.10655 8.40661 9.19777 9.91960 10.12022 11.40129 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.003347 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.764333 B = 8364.910434 C = 8990.598998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.076 0.924 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.544 6.544 9 N -0.611 5.611 10 C 0.104 3.896 11 C -0.127 4.127 12 C -0.098 4.098 13 C 0.162 3.838 14 N -0.755 5.755 15 C -0.243 4.243 16 H 0.089 0.911 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.125 4.125 24 C 0.112 3.888 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.445 -2.578 8.092 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.211 4.211 6 C -0.178 4.178 7 C 0.304 3.696 8 O -0.422 6.422 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.165 4.165 12 C -0.117 4.117 13 C 0.035 3.965 14 N -0.401 5.401 15 C -0.373 4.373 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.164 4.164 24 C -0.010 4.010 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.702 -2.016 7.898 25.065 hybrid contribution 0.377 -1.056 0.917 1.449 sum -23.325 -3.072 8.815 25.123 Atomic orbital electron populations 1.21805 0.95765 1.01404 1.02055 1.21603 0.96153 0.96143 1.01952 1.20918 0.92740 0.95922 0.99845 0.90538 1.21992 1.01050 1.02186 0.95897 1.21811 0.97680 0.94212 1.04107 1.20694 0.81614 0.91693 0.75590 1.90637 1.54217 1.46748 1.50630 1.48204 1.05998 1.07817 1.72393 1.21958 0.90662 0.89246 0.99994 1.22022 0.97654 0.98315 0.98547 1.21359 0.95520 0.94114 1.00691 1.20648 0.87193 0.93259 0.95372 1.42728 1.19964 1.39254 1.38182 1.19073 0.94377 1.14710 1.09152 0.89283 1.24684 0.96531 0.99307 0.98768 1.69703 1.08939 1.39591 1.40063 0.86547 0.76935 0.82326 0.82731 1.21051 1.21729 1.20359 1.21883 0.95778 0.99437 0.99255 1.21598 0.97680 0.82932 0.98826 0.92913 0.92790 0.92385 0.91888 0.92068 0.92797 0.90746 0.93382 0.88811 0.89077 0.91223 0.89807 0.91287 0.90112 0.91067 0.95557 0.95522 0.80721 0.93065 0.91433 0.90511 0.89190 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.08 -0.67 2.04 -90.62 -0.18 -0.86 16 4 H 0.08 0.78 7.95 -51.93 -0.41 0.37 16 5 C -0.15 -1.51 8.69 37.16 0.32 -1.18 16 6 C -0.14 -1.23 3.52 -27.89 -0.10 -1.32 16 7 C 0.52 6.17 7.41 -10.98 -0.08 6.09 16 8 O -0.54 -8.12 13.38 5.56 0.07 -8.04 16 9 N -0.61 -6.98 2.97 -172.53 -0.51 -7.49 16 10 C 0.10 1.07 6.37 -3.48 -0.02 1.05 16 11 C -0.13 -1.65 5.26 -26.38 -0.14 -1.79 16 12 C -0.10 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 14 N -0.76 -17.49 5.12 -59.91 -0.31 -17.80 16 15 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 16 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 19 Si 0.88 21.66 27.73 -169.99 -4.71 16.95 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 23 C -0.12 -1.52 5.36 -26.63 -0.14 -1.66 16 24 C 0.11 1.29 6.43 -3.73 -0.02 1.27 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.48 6.56 -51.93 -0.34 0.13 16 31 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.76 7.70 -51.93 -0.40 0.36 16 34 H 0.09 0.66 7.93 -51.93 -0.41 0.25 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.15 7.15 -51.92 -0.37 0.78 16 39 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.36 8.01 4.71 -40.82 -0.19 7.82 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.11 7.01 -51.93 -0.36 0.74 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -32.32 357.54 -8.46 -40.78 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.54 Total: 4.43 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.63 Total: -5.69 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.04 Total: -53.82 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.32 -8.46 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205106910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.096 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds