Wall clock time and date at job start Tue Mar 31 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08999 * 109.47309 * 54.99473 * 3 2 1 5 5 C 1.53003 * 109.46907 * 294.99769 * 3 2 1 6 6 C 1.52992 * 109.47148 * 174.99761 * 3 2 1 7 7 C 1.50700 * 109.47257 * 184.99859 * 6 3 2 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 3 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 3 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.53626 * 108.53906 * 126.36585 * 10 9 7 12 12 C 1.53041 * 109.24183 * 54.85853 * 11 10 9 13 13 C 1.52998 * 109.46043 * 178.48489 * 12 11 10 14 14 N 1.46496 * 109.47341 * 295.06624 * 13 12 11 15 15 C 1.36941 * 120.00175 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99964 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99744 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00194 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46973 * 90.00539 * 19 17 15 21 21 H 1.48492 * 109.47291 * 210.00621 * 19 17 15 22 22 H 1.48499 * 109.47252 * 330.00704 * 19 17 15 23 23 C 1.53036 * 109.53807 * 298.50777 * 12 11 10 24 24 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 25 25 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46881 * 300.00419 * 1 2 3 27 27 H 1.09003 * 109.46873 * 59.99943 * 1 2 3 28 28 H 1.09002 * 109.47294 * 239.99950 * 2 1 3 29 29 H 1.08998 * 109.46855 * 119.99575 * 2 1 3 30 30 H 1.08998 * 109.47147 * 60.00317 * 5 3 2 31 31 H 1.09005 * 109.46613 * 180.02562 * 5 3 2 32 32 H 1.08993 * 109.47263 * 299.99732 * 5 3 2 33 33 H 1.09004 * 109.47330 * 64.99881 * 6 3 2 34 34 H 1.08997 * 109.47279 * 305.00368 * 6 3 2 35 35 H 1.08998 * 109.58645 * 246.19910 * 10 9 7 36 36 H 1.09001 * 109.58579 * 6.63067 * 10 9 7 37 37 H 1.08990 * 109.63926 * 294.86483 * 11 10 9 38 38 H 1.09009 * 109.45677 * 174.73785 * 11 10 9 39 39 H 1.09009 * 109.44893 * 58.52020 * 12 11 10 40 40 H 1.09000 * 109.46928 * 55.07061 * 13 12 11 41 41 H 1.09002 * 109.46949 * 175.06508 * 13 12 11 42 42 H 0.97006 * 119.99888 * 0.02562 * 14 13 12 43 43 H 0.96998 * 119.99812 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.49825 * 301.41219 * 23 12 11 45 45 H 1.09001 * 109.52568 * 181.32976 * 23 12 11 46 46 H 1.09007 * 109.58781 * 353.37617 * 24 9 7 47 47 H 1.08998 * 109.58580 * 113.65434 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.0570 2.8634 0.2493 8 8 3.2660 3.7827 0.2383 9 7 5.3762 3.1109 0.3719 10 6 6.3461 2.0074 0.3930 11 6 7.4101 2.2716 -0.6832 12 6 8.0261 3.6538 -0.4547 13 6 9.1131 3.9067 -1.5012 14 7 10.2097 2.9550 -1.3062 15 6 11.3018 2.9902 -2.1317 16 1 11.3545 3.7193 -2.9267 17 6 12.3405 2.0880 -1.9472 18 7 13.3900 2.1215 -2.7409 19 14 12.2490 0.8265 -0.5726 20 1 11.5967 -0.4086 -1.0769 21 1 13.6207 0.5056 -0.1031 22 1 11.4566 1.3797 0.5550 23 6 6.9401 4.7249 -0.5784 24 6 5.8713 4.4889 0.4927 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5490 2.1252 -1.3970 31 1 1.9991 3.1541 -1.3076 32 1 2.0700 1.5875 -2.1491 33 1 4.0030 0.9836 -0.7596 34 1 3.8570 0.8801 1.0113 35 1 6.8192 1.9554 1.3736 36 1 5.8354 1.0680 0.1810 37 1 6.9491 2.2374 -1.6702 38 1 8.1885 1.5112 -0.6186 39 1 8.4651 3.6952 0.5422 40 1 8.6937 3.7783 -2.4991 41 1 9.4911 4.9234 -1.3941 42 1 10.1618 2.2994 -0.5929 43 1 14.1160 1.4914 -2.6117 44 1 6.4835 4.6677 -1.5665 45 1 7.3834 5.7110 -0.4391 46 1 5.0472 5.1873 0.3466 47 1 6.3040 4.6363 1.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205106910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:21 Heat of formation + Delta-G solvation = -71.255747 kcal Electronic energy + Delta-G solvation = -22849.399447 eV Core-core repulsion = 19644.475451 eV Total energy + Delta-G solvation = -3204.923996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34336 -39.18786 -37.27455 -36.58946 -34.50926 -32.96151 -32.14878 -31.31443 -29.05439 -27.98112 -25.54218 -24.66037 -24.26868 -22.99827 -21.65052 -20.81177 -19.92593 -19.55371 -18.03997 -16.97935 -16.70238 -16.46158 -15.95363 -15.87595 -15.59949 -15.33431 -15.01391 -14.81819 -14.54690 -14.37107 -14.02386 -13.99163 -13.65391 -13.39289 -13.22791 -13.04685 -12.79988 -12.77190 -12.71416 -12.22164 -12.18500 -12.16794 -11.87575 -11.75115 -11.68689 -11.53077 -11.40025 -11.38671 -11.37774 -10.95794 -10.60172 -9.60878 -9.29047 -8.02073 -5.36124 1.38470 1.43918 1.51401 1.66917 2.05910 2.50078 3.29145 3.53010 3.56995 3.77936 3.86710 3.87709 3.99769 4.06282 4.17057 4.25001 4.37151 4.42604 4.46140 4.56551 4.62111 4.68345 4.72278 4.73656 4.80823 4.83846 4.86827 4.91658 4.93292 5.03946 5.07406 5.13526 5.15331 5.19553 5.24786 5.26868 5.33007 5.49643 5.52187 5.57968 5.63283 5.75894 6.21706 6.46035 7.08912 7.22321 7.84199 8.05563 9.19765 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.003347 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.764333 B = 8364.910434 C = 8990.598998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.073 4.073 4 H 0.060 0.940 5 C -0.152 4.152 6 C -0.134 4.134 7 C 0.509 3.491 8 O -0.580 6.580 9 N -0.612 5.612 10 C 0.109 3.891 11 C -0.126 4.126 12 C -0.087 4.087 13 C 0.159 3.841 14 N -0.754 5.754 15 C -0.238 4.238 16 H 0.050 0.950 17 C -0.068 4.068 18 N -0.987 5.987 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.298 1.298 22 H -0.246 1.246 23 C -0.116 4.116 24 C 0.115 3.885 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.368 0.632 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.938 -4.579 10.312 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.092 4.092 4 H 0.079 0.921 5 C -0.209 4.209 6 C -0.174 4.174 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.345 5.345 10 C -0.013 4.013 11 C -0.165 4.165 12 C -0.106 4.106 13 C 0.033 3.967 14 N -0.400 5.400 15 C -0.369 4.369 16 H 0.068 0.932 17 C -0.259 4.259 18 N -0.637 5.637 19 Si 0.786 3.214 20 H -0.198 1.198 21 H -0.225 1.225 22 H -0.170 1.170 23 C -0.155 4.155 24 C -0.008 4.008 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.239 -4.004 10.134 27.490 hybrid contribution 0.827 -0.306 0.112 0.889 sum -24.412 -4.310 10.246 26.823 Atomic orbital electron populations 1.21821 0.95725 1.01934 1.01734 1.21568 0.96191 0.94764 1.02813 1.20884 0.93001 0.96839 0.98483 0.92147 1.21948 1.01361 1.00693 0.96890 1.21872 0.97393 0.92310 1.05813 1.21288 0.81411 0.92669 0.74692 1.90631 1.55110 1.48133 1.52188 1.48306 1.06214 1.07999 1.71966 1.22032 0.89812 0.89804 0.99627 1.21984 0.98176 0.96923 0.99369 1.21249 0.94502 0.95783 0.99091 1.20795 0.87309 0.91893 0.96668 1.42669 1.19560 1.40277 1.37521 1.19031 0.95918 1.13337 1.08610 0.93196 1.25607 0.96066 1.02141 1.02088 1.69907 1.10107 1.41059 1.42667 0.85345 0.76971 0.79287 0.79830 1.19833 1.22499 1.17008 1.21791 0.95323 0.99196 0.99172 1.21536 0.96930 0.83246 0.99073 0.91942 0.93085 0.92815 0.91263 0.90882 0.92340 0.93518 0.92766 0.87432 0.86621 0.89690 0.87121 0.92060 0.90972 0.90396 0.96494 0.96226 0.79765 0.93327 0.92377 0.89787 0.90219 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 71.98 0.70 -1.11 16 2 C -0.12 -1.35 5.40 30.60 0.17 -1.18 16 3 C -0.07 -1.17 2.04 -10.79 -0.02 -1.19 16 4 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 5 C -0.15 -2.84 8.69 71.98 0.63 -2.21 16 6 C -0.13 -1.98 3.52 29.85 0.11 -1.88 16 7 C 0.51 11.23 7.41 87.66 0.65 11.88 16 8 O -0.58 -17.03 13.38 -3.03 -0.04 -17.07 16 9 N -0.61 -12.42 2.97 -818.13 -2.43 -14.85 16 10 C 0.11 1.83 6.37 86.51 0.55 2.38 16 11 C -0.13 -2.93 5.26 30.82 0.16 -2.77 16 12 C -0.09 -2.30 2.19 -10.77 -0.02 -2.33 16 13 C 0.16 5.88 5.65 86.38 0.49 6.36 16 14 N -0.75 -34.19 5.12 -343.46 -1.76 -35.95 16 15 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 17 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 18 N -0.99 -63.33 13.97 21.65 0.30 -63.03 16 19 Si 0.96 43.95 27.73 68.60 1.90 45.85 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.25 -9.87 6.52 99.48 0.65 -9.22 16 23 C -0.12 -2.65 5.36 30.66 0.16 -2.48 16 24 C 0.11 2.43 6.43 86.35 0.55 2.98 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.66 6.57 -2.39 -0.02 0.65 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 1.00 6.56 -2.39 -0.02 0.98 16 31 H 0.05 1.14 5.95 -2.38 -0.01 1.13 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.33 7.70 -2.38 -0.02 1.31 16 34 H 0.12 1.17 7.93 -2.39 -0.02 1.15 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.29 5.93 -2.39 -0.01 1.28 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.83 7.15 -2.38 -0.02 1.82 16 39 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.37 15.43 4.71 -92.70 -0.44 14.99 16 43 H 0.26 15.71 8.31 -92.71 -0.77 14.93 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.08 1.89 7.01 -2.38 -0.02 1.87 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.82 357.54 3.87 -67.95 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.43 Total: 24.87 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.46 Total: -7.77 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -3.88 Total: -113.83 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.04 Total: -17.07 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.85 kcal Total: -71.82 3.87 -67.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205106910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.310 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds