Wall clock time and date at job start Tue Mar 31 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47221 * 2 1 4 4 N 1.46901 * 109.47076 * 184.26982 * 3 2 1 5 5 C 1.46904 * 110.99662 * 62.19489 * 4 3 2 6 6 C 1.50705 * 109.47148 * 66.04545 * 5 4 3 7 7 H 1.08000 * 119.99633 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99873 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99795 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99867 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47197 * 59.99467 * 10 8 6 12 12 H 1.48492 * 109.47097 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46714 * 299.99725 * 10 8 6 14 14 C 1.46902 * 111.00352 * 298.24241 * 4 3 2 15 15 C 1.52999 * 109.46951 * 288.33044 * 14 4 3 16 16 C 1.53359 * 109.41725 * 296.26720 * 15 14 4 17 17 C 1.53187 * 109.14727 * 178.67338 * 16 15 14 18 18 N 1.46927 * 108.89190 * 54.57964 * 17 16 15 19 19 C 1.34779 * 120.63339 * 126.29819 * 18 17 16 20 20 C 1.50696 * 120.00621 * 179.97438 * 19 18 17 21 21 O 1.21290 * 119.99893 * 359.97438 * 19 18 17 22 22 C 1.46926 * 118.74089 * 306.31819 * 18 17 16 23 23 C 1.53035 * 109.45947 * 176.13976 * 15 14 4 24 24 H 1.09005 * 109.46908 * 300.00123 * 1 2 3 25 25 H 1.09003 * 109.46817 * 59.99929 * 1 2 3 26 26 H 1.08992 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47108 * 240.00303 * 2 1 3 28 28 H 1.09003 * 109.46817 * 120.00071 * 2 1 3 29 29 H 1.09003 * 109.46641 * 64.27687 * 3 2 1 30 30 H 1.08997 * 109.47400 * 304.27372 * 3 2 1 31 31 H 1.08997 * 109.46889 * 186.04288 * 5 4 3 32 32 H 1.08996 * 109.47031 * 306.04528 * 5 4 3 33 33 H 0.96997 * 119.99393 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47171 * 168.32961 * 14 4 3 35 35 H 1.08999 * 109.46771 * 48.32929 * 14 4 3 36 36 H 1.08998 * 109.46297 * 56.16446 * 15 14 4 37 37 H 1.08999 * 109.68428 * 58.70941 * 16 15 14 38 38 H 1.08995 * 109.47085 * 298.51485 * 16 15 14 39 39 H 1.08992 * 109.59142 * 294.71823 * 17 16 15 40 40 H 1.09006 * 109.58604 * 174.43366 * 17 16 15 41 41 H 1.09001 * 109.47098 * 89.99302 * 20 19 18 42 42 H 1.08995 * 109.47837 * 209.99804 * 20 19 18 43 43 H 1.09004 * 109.47034 * 330.00375 * 20 19 18 44 44 H 1.08994 * 109.58672 * 173.39941 * 22 18 17 45 45 H 1.09006 * 109.58439 * 293.67887 * 22 18 17 46 46 H 1.09000 * 109.49613 * 61.43543 * 23 15 14 47 47 H 1.08994 * 109.52581 * 301.34926 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5054 1.4438 -0.1031 5 6 3.9448 0.8348 -1.3657 6 6 3.5034 1.6974 -2.5199 7 1 2.9520 2.6073 -2.3340 8 6 3.8034 1.3251 -3.8131 9 7 4.4752 0.2173 -4.0393 10 14 3.2569 2.3947 -5.2437 11 1 3.8593 3.7455 -5.1103 12 1 3.7009 1.7790 -6.5199 13 1 1.7764 2.5102 -5.2379 14 6 4.1149 0.7655 1.0486 15 6 3.9605 1.6390 2.2952 16 6 4.7379 2.9466 2.1009 17 6 4.5521 3.8302 3.3384 18 7 4.9417 3.0662 4.5313 19 6 5.8512 3.5588 5.3956 20 6 6.2400 2.7634 6.6150 21 8 6.3567 4.6423 5.1918 22 6 4.3215 1.7548 4.7642 23 6 4.5091 0.8915 3.5127 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7406 1.9337 0.9259 30 1 1.6156 1.9780 -0.8492 31 1 5.0315 0.7508 -1.3697 32 1 3.5033 -0.1570 -1.4637 33 1 4.6866 -0.0444 -4.9491 34 1 5.1737 0.5964 0.8522 35 1 3.6183 -0.1910 1.2114 36 1 2.9058 1.8644 2.4524 37 1 4.3630 3.4693 1.2210 38 1 5.7966 2.7236 1.9686 39 1 3.5071 4.1286 3.4208 40 1 5.1797 4.7173 3.2515 41 1 7.0862 2.1198 6.3744 42 1 6.5184 3.4441 7.4194 43 1 5.3966 2.1505 6.9332 44 1 4.7984 1.2712 5.6166 45 1 3.2580 1.8842 4.9653 46 1 5.5699 0.6878 3.3669 47 1 3.9716 -0.0487 3.6355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208676815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:58 Heat of formation + Delta-G solvation = -48.041084 kcal Electronic energy + Delta-G solvation = -23319.750446 eV Core-core repulsion = 20115.833114 eV Total energy + Delta-G solvation = -3203.917333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19659 -38.25094 -36.71390 -33.54084 -32.80095 -31.67561 -31.41562 -29.52742 -27.60607 -26.39407 -24.73776 -23.19178 -22.66648 -22.05354 -20.59666 -19.12550 -18.81330 -17.13684 -16.20609 -15.90609 -15.57819 -15.18056 -14.85333 -14.54674 -14.11570 -13.93488 -13.79661 -13.59888 -13.23580 -13.05160 -13.00405 -12.67672 -12.29608 -12.22875 -11.96790 -11.59314 -11.32238 -11.28134 -11.18370 -10.98857 -10.86539 -10.79479 -10.61654 -10.47599 -10.29609 -10.26237 -9.88157 -9.80762 -9.58851 -9.17293 -8.66428 -8.41397 -7.12372 -6.01546 -4.02173 2.55237 2.96862 3.33699 3.38052 3.40920 4.42118 4.45919 4.63438 4.80889 4.91256 4.98809 5.15861 5.16325 5.20642 5.30793 5.34200 5.44572 5.51180 5.51432 5.56139 5.64272 5.73535 5.79447 5.83894 5.94350 6.00184 6.05733 6.10276 6.18464 6.24711 6.35295 6.41335 6.43325 6.49903 6.67067 6.71968 6.75279 6.93795 7.34197 7.35434 7.43489 7.81943 8.10379 8.12268 8.23538 8.58047 9.05187 9.61813 11.09222 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.003922 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.960461 B = 7137.013586 C = 7857.765930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.066 3.934 4 N -0.532 5.532 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.055 3.945 15 C -0.080 4.080 16 C -0.117 4.117 17 C 0.108 3.892 18 N -0.610 5.610 19 C 0.510 3.490 20 C -0.176 4.176 21 O -0.553 6.553 22 C 0.107 3.893 23 C -0.131 4.131 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.026 0.974 32 H -0.003 1.003 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 -0.555 18.847 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.062 4.062 4 N -0.255 5.255 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.073 4.073 15 C -0.099 4.099 16 C -0.155 4.155 17 C -0.014 4.014 18 N -0.344 5.344 19 C 0.298 3.702 20 C -0.235 4.235 21 O -0.432 6.432 22 C -0.016 4.016 23 C -0.170 4.170 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.015 0.985 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.150 0.413 18.578 18.706 hybrid contribution -0.560 -0.595 -0.948 1.252 sum -2.710 -0.183 17.630 17.838 Atomic orbital electron populations 1.21649 0.96549 1.00615 1.01206 1.22170 0.95521 1.00582 1.01981 1.22053 0.88973 0.94339 1.00856 1.62293 1.05961 1.54386 1.02820 1.19763 0.95718 0.93393 0.84590 1.21110 1.35116 1.07882 0.90114 0.92041 1.24966 0.95421 0.95258 0.98917 1.69945 1.40056 1.23172 1.20789 0.86606 0.78935 0.80672 0.81470 1.20195 1.21443 1.20339 1.22104 0.99547 0.94542 0.91137 1.21172 0.99609 0.95411 0.93698 1.21894 1.00641 0.95790 0.97225 1.21727 1.00240 0.95438 0.83982 1.48236 1.41790 1.19799 1.24562 1.20774 0.78444 0.86415 0.84527 1.21962 1.03401 1.01641 0.96493 1.90707 1.53990 1.22281 1.76178 1.21817 0.98232 0.83051 0.98534 1.21965 1.02148 0.98330 0.94521 0.93593 0.92691 0.93716 0.90661 0.93167 0.93105 0.90281 0.95625 0.98492 0.92957 0.91840 0.95329 0.91271 0.88695 0.92135 0.91794 0.89346 0.88918 0.89144 0.90001 0.89718 0.91370 0.91464 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.16 -2.76 5.29 -26.73 -0.14 -2.90 16 3 C 0.07 1.20 5.01 -3.82 -0.02 1.18 16 4 N -0.53 -10.58 4.04 -236.06 -0.95 -11.54 16 5 C 0.19 4.75 4.51 -4.97 -0.02 4.72 16 6 C -0.50 -13.75 8.48 -34.44 -0.29 -14.04 16 7 H 0.06 1.67 7.11 -52.49 -0.37 1.29 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.06 0.91 4.23 -3.82 -0.02 0.89 16 15 C -0.08 -1.04 2.15 -90.42 -0.19 -1.23 16 16 C -0.12 -1.64 5.28 -26.45 -0.14 -1.78 16 17 C 0.11 1.38 6.42 -3.71 -0.02 1.36 16 18 N -0.61 -6.99 2.97 -172.77 -0.51 -7.50 16 19 C 0.51 6.32 7.81 -10.99 -0.09 6.23 16 20 C -0.18 -1.34 9.46 36.00 0.34 -1.00 16 21 O -0.55 -9.30 16.51 5.55 0.09 -9.21 16 22 C 0.11 0.91 6.22 -3.71 -0.02 0.89 16 23 C -0.13 -1.32 5.36 -26.61 -0.14 -1.47 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.53 6.12 -51.93 -0.32 1.21 16 28 H 0.05 0.79 6.43 -51.93 -0.33 0.45 16 29 H 0.05 0.80 6.56 -51.93 -0.34 0.46 16 30 H 0.08 1.60 6.80 -51.93 -0.35 1.25 16 31 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.00 -0.07 5.99 -51.93 -0.31 -0.38 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 35 H 0.03 0.46 5.92 -51.93 -0.31 0.16 16 36 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 37 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.43 6.19 -51.93 -0.32 0.11 16 44 H 0.08 0.52 5.52 -51.93 -0.29 0.23 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -31.36 356.59 -9.00 -40.36 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.23 Total: -0.91 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.49 Total: -7.36 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.73 Total: -44.75 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.36 -9.00 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208676815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.680 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds