Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 N 1.46897 * 109.47044 * 184.63353 * 3 2 1 5 5 C 1.46899 * 111.00465 * 66.98946 * 4 3 2 6 6 C 1.50704 * 109.47109 * 71.97807 * 5 4 3 7 7 H 1.07998 * 119.99880 * 4.76219 * 6 5 4 8 8 C 1.37878 * 119.99746 * 184.76381 * 6 5 4 9 9 N 1.31514 * 120.00151 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99947 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46893 * 89.99950 * 10 8 6 12 12 H 1.48490 * 109.47219 * 209.99974 * 10 8 6 13 13 H 1.48502 * 109.47013 * 330.00252 * 10 8 6 14 14 C 1.46906 * 110.99823 * 303.03313 * 4 3 2 15 15 C 1.53000 * 109.47052 * 289.28377 * 14 4 3 16 16 H 1.09002 * 109.51833 * 56.98588 * 15 14 4 17 17 C 1.53040 * 109.49883 * 296.90397 * 15 14 4 18 18 C 1.53047 * 109.53372 * 178.68203 * 17 15 14 19 19 C 1.53186 * 109.31304 * 61.36789 * 18 17 15 20 20 N 1.46931 * 108.77391 * 305.36302 * 19 18 17 21 21 C 1.34776 * 120.62653 * 233.33157 * 20 19 18 22 22 C 1.50696 * 120.00133 * 0.02562 * 21 20 19 23 23 O 1.21282 * 119.99663 * 179.97438 * 21 20 19 24 24 C 1.46924 * 118.74111 * 53.60883 * 20 19 18 25 25 H 1.09004 * 109.47202 * 60.00721 * 1 2 3 26 26 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47175 * 300.00360 * 1 2 3 28 28 H 1.08999 * 109.47175 * 239.99640 * 2 1 3 29 29 H 1.09006 * 109.47073 * 120.00049 * 2 1 3 30 30 H 1.09000 * 109.47162 * 64.62884 * 3 2 1 31 31 H 1.09006 * 109.46570 * 304.62816 * 3 2 1 32 32 H 1.09000 * 109.47213 * 191.98098 * 5 4 3 33 33 H 1.09000 * 109.46808 * 311.97996 * 5 4 3 34 34 H 0.96998 * 119.99828 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46878 * 169.28769 * 14 4 3 36 36 H 1.09000 * 109.46704 * 49.28995 * 14 4 3 37 37 H 1.09003 * 109.45672 * 58.66638 * 17 15 14 38 38 H 1.08994 * 109.44905 * 298.69402 * 17 15 14 39 39 H 1.08997 * 109.50043 * 301.40946 * 18 17 15 40 40 H 1.09004 * 109.49358 * 181.31905 * 18 17 15 41 41 H 1.08994 * 109.58999 * 185.57601 * 19 18 17 42 42 H 1.09003 * 109.58562 * 65.14813 * 19 18 17 43 43 H 1.09000 * 109.47543 * 59.99875 * 22 21 20 44 44 H 1.09009 * 109.46921 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47238 * 299.99384 * 22 21 20 46 46 H 1.09004 * 109.58497 * 66.17991 * 24 20 19 47 47 H 1.08996 * 109.58793 * 186.60044 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4440 -0.1119 5 6 3.9330 0.9426 -1.4246 6 6 3.6203 1.9705 -2.4814 7 1 3.2215 2.9330 -2.1971 8 6 3.8433 1.6819 -3.8110 9 7 4.3284 0.5096 -4.1571 10 14 3.4549 2.9557 -5.1211 11 1 4.6525 3.8007 -5.3602 12 1 3.0738 2.2692 -6.3814 13 1 2.3299 3.8099 -4.6628 14 6 4.1164 0.6662 0.9739 15 6 3.9538 1.4199 2.2954 16 1 2.8963 1.6108 2.4781 17 6 4.7075 2.7497 2.2211 18 6 4.5183 3.5191 3.5305 19 6 5.0970 2.6994 4.6880 20 7 4.4808 1.3656 4.6773 21 6 3.8902 0.8732 5.7842 22 6 3.8570 1.6927 7.0485 23 8 3.3847 -0.2290 5.7625 24 6 4.5261 0.5763 3.4389 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.7460 1.9318 0.9285 31 1 1.6105 1.9796 -0.8457 32 1 5.0063 0.7529 -1.4085 33 1 3.4037 0.0168 -1.6502 34 1 4.4856 0.3067 -5.0926 35 1 5.1767 0.5228 0.7655 36 1 3.6258 -0.3045 1.0464 37 1 4.3186 3.3417 1.3926 38 1 5.7686 2.5571 2.0632 39 1 3.4555 3.6903 3.7016 40 1 5.0359 4.4764 3.4680 41 1 4.8773 3.1958 5.6331 42 1 6.1759 2.6045 4.5649 43 1 3.3286 2.6276 6.8618 44 1 3.3417 1.1342 7.8300 45 1 4.8764 1.9091 7.3681 46 1 5.5584 0.3082 3.2140 47 1 3.9297 -0.3280 3.5599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208970274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = -50.301451 kcal Electronic energy + Delta-G solvation = -23466.528402 eV Core-core repulsion = 20262.513053 eV Total energy + Delta-G solvation = -3204.015350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22001 -38.17759 -36.74364 -33.44824 -32.82051 -31.90088 -31.31777 -29.75543 -27.11814 -25.95418 -25.14473 -23.90634 -22.24952 -21.94140 -20.54503 -19.03015 -18.82120 -17.10727 -16.18146 -16.02587 -15.54720 -15.12505 -14.90053 -14.49326 -14.21509 -13.95518 -13.78605 -13.40525 -13.25096 -13.09545 -12.95189 -12.70136 -12.35298 -12.28831 -11.91071 -11.65031 -11.36620 -11.25622 -11.01025 -10.98531 -10.76962 -10.73341 -10.59985 -10.53057 -10.29528 -10.27112 -9.96961 -9.83279 -9.55624 -9.19280 -8.64760 -8.40104 -7.11707 -6.00277 -4.01107 2.54524 2.94596 3.32382 3.38639 3.42062 4.42934 4.45350 4.69348 4.86687 4.94382 4.99894 5.01504 5.14486 5.24622 5.34053 5.35565 5.41975 5.53037 5.55051 5.55966 5.62796 5.76279 5.79359 5.88730 5.89162 5.96212 6.08900 6.12956 6.22503 6.25902 6.42339 6.44731 6.46059 6.53040 6.65567 6.71239 6.75135 6.94952 7.31634 7.35125 7.46479 7.84841 8.09404 8.14509 8.23792 8.58854 9.07333 9.62915 11.10114 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.004022 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.022090 B = 6959.980612 C = 7551.518188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.066 3.934 4 N -0.530 5.530 5 C 0.189 3.811 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.055 3.945 15 C -0.092 4.092 16 H 0.070 0.930 17 C -0.106 4.106 18 C -0.136 4.136 19 C 0.106 3.894 20 N -0.610 5.610 21 C 0.509 3.491 22 C -0.173 4.173 23 O -0.552 6.552 24 C 0.114 3.886 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.002 0.998 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 4.633 18.599 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.063 4.063 4 N -0.252 5.252 5 C 0.064 3.936 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.074 4.074 15 C -0.112 4.112 16 H 0.089 0.911 17 C -0.144 4.144 18 C -0.174 4.174 19 C -0.017 4.017 20 N -0.343 5.343 21 C 0.298 3.702 22 C -0.232 4.232 23 O -0.430 6.430 24 C -0.009 4.009 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.095 4.441 18.468 18.995 hybrid contribution -0.356 -0.181 -0.966 1.045 sum -0.261 4.260 17.503 18.016 Atomic orbital electron populations 1.21647 0.96456 1.00700 1.01225 1.22182 0.95690 1.00534 1.01932 1.22053 0.88955 0.94310 1.00956 1.62279 1.06116 1.52963 1.03887 1.19788 0.95445 0.94858 0.83525 1.21151 1.42007 1.00540 0.90314 0.91988 1.24979 0.95597 0.95423 0.98655 1.69957 1.45502 1.21265 1.17249 0.86544 0.78645 0.81430 0.81053 1.20724 1.21422 1.19902 1.22056 0.99704 0.94625 0.90999 1.21463 1.00215 0.95685 0.93787 0.91117 1.21456 1.00227 0.95910 0.96781 1.21965 1.01416 0.98601 0.95449 1.21811 0.97545 0.82476 0.99834 1.48165 1.56725 1.17889 1.11542 1.20784 0.77385 0.86930 0.85118 1.21931 1.04223 1.01345 0.95727 1.90710 1.46210 1.21394 1.84655 1.21680 1.01479 0.94965 0.82750 0.92709 0.93641 0.93511 0.90992 0.92860 0.93059 0.90245 0.95933 0.97990 0.93025 0.91553 0.95031 0.89479 0.92275 0.91781 0.90851 0.90027 0.91298 0.89454 0.89218 0.89553 0.91581 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.16 -2.93 5.22 -26.73 -0.14 -3.07 16 3 C 0.07 1.24 5.03 -3.83 -0.02 1.22 16 4 N -0.53 -10.75 3.97 -236.06 -0.94 -11.69 16 5 C 0.19 4.75 4.63 -4.97 -0.02 4.73 16 6 C -0.50 -13.76 8.43 -34.44 -0.29 -14.05 16 7 H 0.06 1.70 7.69 -52.49 -0.40 1.29 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.06 0.95 4.16 -3.82 -0.02 0.94 16 15 C -0.09 -1.30 2.31 -90.50 -0.21 -1.51 16 16 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16 17 C -0.11 -1.38 5.06 -26.69 -0.13 -1.52 16 18 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16 19 C 0.11 0.91 6.34 -3.71 -0.02 0.89 16 20 N -0.61 -7.08 2.97 -172.77 -0.51 -7.59 16 21 C 0.51 6.35 7.81 -10.99 -0.09 6.27 16 22 C -0.17 -1.31 8.67 36.00 0.31 -1.00 16 23 O -0.55 -9.36 16.50 5.56 0.09 -9.26 16 24 C 0.11 1.51 5.72 -3.71 -0.02 1.49 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.49 6.20 -51.93 -0.32 1.16 16 29 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 30 H 0.05 0.88 6.72 -51.93 -0.35 0.53 16 31 H 0.08 1.66 7.24 -51.93 -0.38 1.29 16 32 H 0.02 0.61 7.74 -51.93 -0.40 0.21 16 33 H 0.00 0.06 6.01 -51.93 -0.31 -0.25 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.07 1.16 7.76 -51.93 -0.40 0.76 16 36 H 0.03 0.55 5.80 -51.93 -0.30 0.25 16 37 H 0.09 1.34 7.66 -51.93 -0.40 0.95 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.49 5.94 -51.93 -0.31 0.18 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.52 7.69 -51.93 -0.40 0.12 16 44 H 0.09 0.68 8.12 -51.92 -0.42 0.26 16 45 H 0.09 0.48 7.95 -51.93 -0.41 0.06 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -31.41 358.41 -9.15 -40.56 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.37 Total: -0.62 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.54 Total: -7.50 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.71 Total: -45.06 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.41 -9.15 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208970274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.737 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds