Wall clock time and date at job start Tue Mar 31 2020 06:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 N 1.46897 * 109.47044 * 184.63353 * 3 2 1 5 5 C 1.46899 * 111.00465 * 66.98946 * 4 3 2 6 6 C 1.50704 * 109.47109 * 71.97807 * 5 4 3 7 7 H 1.07998 * 119.99880 * 4.76219 * 6 5 4 8 8 C 1.37878 * 119.99746 * 184.76381 * 6 5 4 9 9 N 1.31514 * 120.00151 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99947 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46893 * 89.99950 * 10 8 6 12 12 H 1.48490 * 109.47219 * 209.99974 * 10 8 6 13 13 H 1.48502 * 109.47013 * 330.00252 * 10 8 6 14 14 C 1.46906 * 110.99823 * 303.03313 * 4 3 2 15 15 C 1.53000 * 109.47052 * 289.28377 * 14 4 3 16 16 H 1.09002 * 109.51833 * 56.98588 * 15 14 4 17 17 C 1.53040 * 109.49883 * 296.90397 * 15 14 4 18 18 C 1.53047 * 109.53372 * 178.68203 * 17 15 14 19 19 C 1.53186 * 109.31304 * 61.36789 * 18 17 15 20 20 N 1.46931 * 108.77391 * 305.36302 * 19 18 17 21 21 C 1.34776 * 120.62653 * 233.33157 * 20 19 18 22 22 C 1.50696 * 120.00133 * 0.02562 * 21 20 19 23 23 O 1.21282 * 119.99663 * 179.97438 * 21 20 19 24 24 C 1.46924 * 118.74111 * 53.60883 * 20 19 18 25 25 H 1.09004 * 109.47202 * 60.00721 * 1 2 3 26 26 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47175 * 300.00360 * 1 2 3 28 28 H 1.08999 * 109.47175 * 239.99640 * 2 1 3 29 29 H 1.09006 * 109.47073 * 120.00049 * 2 1 3 30 30 H 1.09000 * 109.47162 * 64.62884 * 3 2 1 31 31 H 1.09006 * 109.46570 * 304.62816 * 3 2 1 32 32 H 1.09000 * 109.47213 * 191.98098 * 5 4 3 33 33 H 1.09000 * 109.46808 * 311.97996 * 5 4 3 34 34 H 0.96998 * 119.99828 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46878 * 169.28769 * 14 4 3 36 36 H 1.09000 * 109.46704 * 49.28995 * 14 4 3 37 37 H 1.09003 * 109.45672 * 58.66638 * 17 15 14 38 38 H 1.08994 * 109.44905 * 298.69402 * 17 15 14 39 39 H 1.08997 * 109.50043 * 301.40946 * 18 17 15 40 40 H 1.09004 * 109.49358 * 181.31905 * 18 17 15 41 41 H 1.08994 * 109.58999 * 185.57601 * 19 18 17 42 42 H 1.09003 * 109.58562 * 65.14813 * 19 18 17 43 43 H 1.09000 * 109.47543 * 59.99875 * 22 21 20 44 44 H 1.09009 * 109.46921 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47238 * 299.99384 * 22 21 20 46 46 H 1.09004 * 109.58497 * 66.17991 * 24 20 19 47 47 H 1.08996 * 109.58793 * 186.60044 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4440 -0.1119 5 6 3.9330 0.9426 -1.4246 6 6 3.6203 1.9705 -2.4814 7 1 3.2215 2.9330 -2.1971 8 6 3.8433 1.6819 -3.8110 9 7 4.3284 0.5096 -4.1571 10 14 3.4549 2.9557 -5.1211 11 1 4.6525 3.8007 -5.3602 12 1 3.0738 2.2692 -6.3814 13 1 2.3299 3.8099 -4.6628 14 6 4.1164 0.6662 0.9739 15 6 3.9538 1.4199 2.2954 16 1 2.8963 1.6108 2.4781 17 6 4.7075 2.7497 2.2211 18 6 4.5183 3.5191 3.5305 19 6 5.0970 2.6994 4.6880 20 7 4.4808 1.3656 4.6773 21 6 3.8902 0.8732 5.7842 22 6 3.8570 1.6927 7.0485 23 8 3.3847 -0.2290 5.7625 24 6 4.5261 0.5763 3.4389 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.7460 1.9318 0.9285 31 1 1.6105 1.9796 -0.8457 32 1 5.0063 0.7529 -1.4085 33 1 3.4037 0.0168 -1.6502 34 1 4.4856 0.3067 -5.0926 35 1 5.1767 0.5228 0.7655 36 1 3.6258 -0.3045 1.0464 37 1 4.3186 3.3417 1.3926 38 1 5.7686 2.5571 2.0632 39 1 3.4555 3.6903 3.7016 40 1 5.0359 4.4764 3.4680 41 1 4.8773 3.1958 5.6331 42 1 6.1759 2.6045 4.5649 43 1 3.3286 2.6276 6.8618 44 1 3.3417 1.1342 7.8300 45 1 4.8764 1.9091 7.3681 46 1 5.5584 0.3082 3.2140 47 1 3.9297 -0.3280 3.5599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208970274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:00 Heat of formation + Delta-G solvation = -69.861268 kcal Electronic energy + Delta-G solvation = -23467.376580 eV Core-core repulsion = 20262.513053 eV Total energy + Delta-G solvation = -3204.863527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21368 -39.57567 -37.98303 -34.95658 -34.51665 -33.17945 -32.50662 -30.65156 -28.96308 -27.31752 -26.15875 -25.53784 -23.67754 -23.23850 -21.82432 -20.38358 -19.88126 -18.35640 -17.99696 -17.19633 -16.74455 -16.41129 -16.35731 -16.19926 -15.39916 -15.19747 -14.95817 -14.88268 -14.27710 -14.22701 -14.13605 -13.94904 -13.50516 -13.25608 -13.12178 -12.99776 -12.86731 -12.71350 -12.64221 -12.47282 -12.34935 -12.22424 -12.03257 -11.87903 -11.72180 -11.58518 -11.46375 -11.21034 -11.10317 -10.78749 -10.56953 -9.62839 -8.85733 -8.16620 -6.26161 1.41363 1.42264 1.53337 1.63236 2.06192 2.41713 3.15446 3.33903 3.65502 3.80190 3.97220 4.05046 4.12494 4.14099 4.20111 4.32709 4.38308 4.46622 4.52063 4.57485 4.60345 4.66545 4.66682 4.75521 4.78935 4.87371 4.90144 4.94473 5.01070 5.06975 5.11488 5.14054 5.17872 5.25616 5.29456 5.39887 5.48866 5.50852 5.55250 5.61362 5.70602 6.11827 6.40134 6.48066 6.68458 6.90871 7.17949 7.43203 8.93439 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.004022 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.022090 B = 6959.980612 C = 7551.518188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.157 4.157 3 C 0.070 3.930 4 N -0.530 5.530 5 C 0.205 3.795 6 C -0.514 4.514 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.057 3.943 15 C -0.076 4.076 16 H 0.062 0.938 17 C -0.105 4.105 18 C -0.129 4.129 19 C 0.104 3.896 20 N -0.609 5.609 21 C 0.499 3.501 22 C -0.164 4.164 23 O -0.608 6.608 24 C 0.119 3.881 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.057 0.943 32 H -0.005 1.005 33 H -0.025 1.025 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 7.078 20.602 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C -0.058 4.058 4 N -0.252 5.252 5 C 0.079 3.921 6 C -0.552 4.552 7 H 0.079 0.921 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.189 1.189 14 C -0.072 4.072 15 C -0.096 4.096 16 H 0.081 0.919 17 C -0.142 4.142 18 C -0.167 4.167 19 C -0.017 4.017 20 N -0.341 5.341 21 C 0.290 3.710 22 C -0.222 4.222 23 O -0.490 6.490 24 C -0.005 4.005 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.014 0.986 33 H -0.007 1.007 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.130 0.870 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.070 6.928 20.497 21.636 hybrid contribution -0.273 -0.973 -1.567 1.864 sum -0.343 5.955 18.930 19.847 Atomic orbital electron populations 1.21605 0.94035 1.01823 1.01994 1.22074 0.97815 0.99340 1.00404 1.22030 0.87767 0.94914 1.01116 1.62197 1.07383 1.53083 1.02522 1.19424 0.93351 0.93488 0.85887 1.21436 1.41785 1.00768 0.91217 0.92101 1.25868 0.95296 0.97446 1.01040 1.70090 1.46562 1.23274 1.17812 0.85447 0.78829 0.78817 0.77920 1.19867 1.21094 1.18861 1.22096 0.98791 0.94612 0.91655 1.21279 1.00030 0.96221 0.92080 0.91939 1.21405 0.99625 0.94996 0.98200 1.21916 1.01846 0.99221 0.93671 1.22085 0.97942 0.80619 1.01058 1.48299 1.56469 1.18832 1.10549 1.21761 0.76071 0.86650 0.86471 1.21959 1.06390 1.01226 0.92669 1.90687 1.48618 1.24063 1.85631 1.21435 1.01202 0.94302 0.83546 0.93153 0.92409 0.91455 0.94576 0.92249 0.90592 0.92413 0.98643 1.00715 0.92894 0.92365 0.95705 0.92061 0.92366 0.91947 0.88552 0.86288 0.90017 0.86987 0.89390 0.86677 0.90994 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.38 16 2 C -0.16 -5.77 5.22 30.59 0.16 -5.61 16 3 C 0.07 2.69 5.03 86.30 0.43 3.12 16 4 N -0.53 -22.32 3.97 -900.77 -3.58 -25.90 16 5 C 0.20 10.86 4.63 85.56 0.40 11.25 16 6 C -0.51 -29.01 8.43 25.60 0.22 -28.80 16 7 H 0.06 3.38 7.69 -2.91 -0.02 3.36 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 10 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 14 C 0.06 2.05 4.16 86.30 0.36 2.41 16 15 C -0.08 -2.16 2.31 -10.72 -0.02 -2.18 16 16 H 0.06 1.88 6.66 -2.39 -0.02 1.86 16 17 C -0.10 -2.61 5.06 30.62 0.15 -2.46 16 18 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 19 C 0.10 1.37 6.34 86.36 0.55 1.92 16 20 N -0.61 -12.88 2.97 -818.92 -2.43 -15.32 16 21 C 0.50 11.55 7.81 87.66 0.68 12.23 16 22 C -0.16 -1.86 8.67 71.23 0.62 -1.25 16 23 O -0.61 -20.64 16.50 -3.04 -0.05 -20.69 16 24 C 0.12 3.13 5.72 86.36 0.49 3.62 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.58 6.20 -2.39 -0.01 1.56 16 29 H 0.06 2.08 6.40 -2.38 -0.02 2.07 16 30 H 0.08 2.55 6.72 -2.39 -0.02 2.53 16 31 H 0.06 2.47 7.24 -2.38 -0.02 2.45 16 32 H 0.00 -0.26 7.74 -2.39 -0.02 -0.28 16 33 H -0.02 -1.44 6.01 -2.39 -0.01 -1.45 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 35 H 0.06 2.15 7.76 -2.38 -0.02 2.14 16 36 H 0.02 0.92 5.80 -2.39 -0.01 0.91 16 37 H 0.06 1.86 7.66 -2.39 -0.02 1.85 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.12 0.75 5.94 -2.39 -0.01 0.74 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.11 0.77 7.69 -2.39 -0.02 0.75 16 44 H 0.09 1.08 8.12 -2.38 -0.02 1.06 16 45 H 0.11 0.69 7.95 -2.39 -0.02 0.67 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 47 H 0.06 2.04 7.01 -2.39 -0.02 2.02 16 Total: -1.00 -71.99 358.41 2.57 -69.41 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.92 Total: 13.02 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 5.40 Total: -10.51 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -5.73 Total: -97.72 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.69 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.99 2.57 -69.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208970274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.448 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds