Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.09006 * 109.47161 * 305.00104 * 3 2 1 5 5 C 1.53001 * 109.47418 * 64.99836 * 3 2 1 6 6 C 1.52999 * 109.47282 * 185.00461 * 3 2 1 7 7 C 1.52998 * 109.47170 * 175.00254 * 6 3 2 8 8 C 1.50705 * 109.47028 * 179.97438 * 7 6 3 9 9 O 1.21280 * 120.00079 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99715 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99794 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.88654 * 37.42485 * 11 10 8 13 13 C 1.54912 * 111.00258 * 273.54330 * 11 10 8 14 14 N 1.47426 * 104.83023 * 204.87571 * 13 11 10 15 15 C 1.36942 * 125.64723 * 204.09048 * 14 13 11 16 16 H 1.08001 * 119.99606 * 168.16098 * 15 14 13 17 17 C 1.38816 * 119.99979 * 348.16669 * 15 14 13 18 18 N 1.31619 * 119.99549 * 326.25223 * 17 15 14 19 19 Si 1.86798 * 119.99876 * 145.98230 * 17 15 14 20 20 H 1.48493 * 109.47224 * 59.99521 * 19 17 15 21 21 H 1.48498 * 109.46688 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46793 * 299.99425 * 19 17 15 23 23 C 1.47024 * 108.70412 * 24.36134 * 14 13 11 24 24 C 1.54331 * 107.26485 * 358.58104 * 23 14 13 25 25 H 1.08996 * 110.66820 * 96.52184 * 24 23 14 26 26 C 1.52998 * 110.85278 * 219.67552 * 24 23 14 27 27 H 1.08997 * 109.47412 * 59.99685 * 1 2 3 28 28 H 1.08994 * 109.47467 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46993 * 300.00092 * 1 2 3 30 30 H 1.08997 * 109.47081 * 240.00026 * 2 1 3 31 31 H 1.09000 * 109.47278 * 119.99790 * 2 1 3 32 32 H 1.09000 * 109.46892 * 300.00583 * 5 3 2 33 33 H 1.09006 * 109.46736 * 60.00008 * 5 3 2 34 34 H 1.08994 * 109.47161 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.47023 * 54.99601 * 6 3 2 36 36 H 1.09006 * 109.46962 * 294.99375 * 6 3 2 37 37 H 1.08996 * 109.47681 * 59.99750 * 7 6 3 38 38 H 1.09007 * 109.47193 * 299.99546 * 7 6 3 39 39 H 0.97002 * 120.00483 * 359.97438 * 10 8 7 40 40 H 1.08998 * 110.36593 * 86.04321 * 13 11 10 41 41 H 1.08997 * 110.46484 * 323.76420 * 13 11 10 42 42 H 0.97003 * 120.00486 * 353.97561 * 18 17 15 43 43 H 1.09001 * 109.88261 * 118.12611 * 23 14 13 44 44 H 1.08999 * 109.87760 * 239.29600 * 23 14 13 45 45 H 1.09000 * 109.47248 * 173.69238 * 26 24 23 46 46 H 1.08999 * 109.46789 * 293.69496 * 26 24 23 47 47 H 1.08999 * 109.46849 * 53.69174 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8849 -0.2512 8 6 5.5665 2.8867 -0.3745 9 8 6.1772 1.8390 -0.3628 10 7 6.2310 4.0527 -0.4978 11 6 7.6912 4.0545 -0.6171 12 1 8.0331 3.2112 -1.2171 13 6 8.3624 4.0510 0.7791 14 7 9.6905 4.6525 0.5608 15 6 10.7951 4.4543 1.3456 16 1 11.7661 4.7806 1.0035 17 6 10.6667 3.8339 2.5807 18 7 9.5794 4.0171 3.2993 19 14 12.0340 2.7330 3.2195 20 1 13.2870 3.5203 3.3419 21 1 11.6553 2.1956 4.5511 22 1 12.2465 1.6082 2.2734 23 6 9.6310 5.5054 -0.6353 24 6 8.2005 5.3975 -1.2041 25 1 7.5851 6.2277 -0.8578 26 6 8.2248 5.3453 -2.7330 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5490 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 34 1 1.9990 3.1540 1.3075 35 1 3.8570 0.8800 -1.0114 36 1 4.0030 0.9836 0.7596 37 1 3.7724 3.4492 0.6344 38 1 3.6264 3.3458 -1.1366 39 1 5.7426 4.8907 -0.5075 40 1 8.4642 3.0306 1.1485 41 1 7.7845 4.6520 1.4812 42 1 8.9068 4.6526 3.0080 43 1 9.8475 6.5389 -0.3647 44 1 10.3499 5.1555 -1.3761 45 1 7.2182 5.1571 -3.1063 46 1 8.5850 6.2971 -3.1233 47 1 8.8887 4.5445 -3.0587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209680043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = -49.632924 kcal Electronic energy + Delta-G solvation = -22819.995092 eV Core-core repulsion = 19616.008732 eV Total energy + Delta-G solvation = -3203.986360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.72698 -37.95659 -37.02840 -34.05684 -32.82809 -32.27594 -30.36858 -29.14108 -27.77865 -25.87988 -25.48903 -23.72964 -22.47400 -20.55352 -20.16953 -19.97931 -19.44744 -17.49792 -16.78514 -15.99302 -15.77429 -15.08876 -14.59904 -14.50053 -14.00065 -13.73711 -13.59720 -13.48271 -13.14472 -13.06057 -12.89991 -12.55611 -12.45785 -12.12728 -11.87214 -11.81582 -11.71935 -11.49146 -11.05679 -10.84134 -10.70749 -10.67327 -10.65651 -10.61234 -10.55220 -10.39433 -10.05254 -9.93347 -9.62972 -9.49266 -8.61016 -8.29177 -6.93320 -6.11355 -3.04723 2.93985 3.42790 3.54690 3.61985 3.78123 4.55801 4.64183 4.68978 4.71487 4.92883 5.02085 5.09345 5.21124 5.22127 5.26153 5.29788 5.34145 5.37783 5.39451 5.54696 5.62018 5.67328 5.74939 5.81519 5.85284 5.88009 5.90536 5.94177 5.95592 6.02713 6.07980 6.12346 6.24612 6.28207 6.32122 6.36012 6.60247 6.67371 6.83602 7.03559 7.13353 7.80400 7.83441 8.50534 8.55959 9.03705 9.85830 10.40444 11.22941 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003793 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.732310 B = 7380.493655 C = 8525.483287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.092 4.092 4 H 0.068 0.932 5 C -0.153 4.153 6 C -0.100 4.100 7 C -0.140 4.140 8 C 0.508 3.492 9 O -0.537 6.537 10 N -0.719 5.719 11 C 0.130 3.870 12 H 0.092 0.908 13 C 0.142 3.858 14 N -0.601 5.601 15 C -0.346 4.346 16 H 0.068 0.932 17 C -0.021 4.021 18 N -0.905 5.905 19 Si 1.056 2.944 20 H -0.293 1.293 21 H -0.286 1.286 22 H -0.293 1.293 23 C 0.142 3.858 24 C -0.110 4.110 25 H 0.075 0.925 26 C -0.137 4.137 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.395 0.605 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.267 0.733 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.365 -0.588 -9.782 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.210 4.210 6 C -0.138 4.138 7 C -0.180 4.180 8 C 0.295 3.705 9 O -0.413 6.413 10 N -0.370 5.370 11 C 0.025 3.975 12 H 0.110 0.890 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.473 4.473 16 H 0.086 0.914 17 C -0.223 4.223 18 N -0.545 5.545 19 Si 0.886 3.114 20 H -0.220 1.220 21 H -0.211 1.211 22 H -0.221 1.221 23 C 0.016 3.984 24 C -0.130 4.130 25 H 0.093 0.907 26 C -0.194 4.194 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.229 0.771 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.370 -2.387 -8.474 18.588 hybrid contribution -0.589 1.672 -1.197 2.139 sum -16.960 -0.715 -9.671 19.536 Atomic orbital electron populations 1.21824 0.96092 1.01380 1.01748 1.21569 0.95601 0.96425 1.02241 1.21195 0.95360 0.96198 0.98324 0.91342 1.21962 1.01038 1.00616 0.97353 1.21396 0.93948 0.94845 1.03590 1.21733 0.92209 1.00147 1.03934 1.20705 0.90031 0.83782 0.76025 1.90722 1.69978 1.31429 1.49220 1.45961 1.07757 1.08514 1.74780 1.22349 0.78335 0.97768 0.99052 0.88975 1.21765 0.86384 0.98190 0.92170 1.44473 1.08162 1.51360 1.28870 1.19664 0.85670 1.41811 1.00159 0.91436 1.25672 1.02818 1.01741 0.92074 1.70793 1.11881 1.36098 1.35728 0.83660 0.74792 0.77018 0.75962 1.22021 1.21123 1.22053 1.21354 0.92595 0.94410 0.90072 1.22417 0.98441 0.96735 0.95361 0.90711 1.21732 1.01320 1.01736 0.94653 0.92934 0.93009 0.92533 0.91985 0.91850 0.92675 0.92496 0.92519 0.91285 0.90981 0.88879 0.89357 0.77122 0.92603 0.95886 0.92224 0.95801 0.95236 0.93010 0.92676 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.12 -1.03 5.40 -26.73 -0.14 -1.18 16 3 C -0.09 -0.82 2.39 -90.62 -0.22 -1.03 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.15 -1.29 8.70 37.16 0.32 -0.97 16 6 C -0.10 -1.14 3.97 -26.73 -0.11 -1.24 16 7 C -0.14 -1.55 5.45 -27.88 -0.15 -1.70 16 8 C 0.51 8.12 7.83 -10.98 -0.09 8.04 16 9 O -0.54 -11.15 15.73 5.56 0.09 -11.06 16 10 N -0.72 -10.93 5.23 -51.72 -0.27 -11.21 16 11 C 0.13 2.47 2.77 -65.78 -0.18 2.29 16 12 H 0.09 1.93 7.63 -51.93 -0.40 1.53 16 13 C 0.14 3.48 5.03 -2.53 -0.01 3.47 16 14 N -0.60 -15.81 3.33 -170.06 -0.57 -16.38 16 15 C -0.35 -10.13 9.97 -15.06 -0.15 -10.28 16 16 H 0.07 1.96 8.02 -52.49 -0.42 1.54 16 17 C -0.02 -0.61 4.96 -17.43 -0.09 -0.70 16 18 N -0.91 -28.24 12.86 55.49 0.71 -27.52 16 19 Si 1.06 26.35 30.03 -169.99 -5.10 21.25 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.14 2.99 6.85 -3.06 -0.02 2.97 16 24 C -0.11 -1.82 3.16 -88.78 -0.28 -2.10 16 25 H 0.07 1.13 7.99 -51.93 -0.42 0.71 16 26 C -0.14 -1.82 9.16 37.16 0.34 -1.48 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 6.57 -51.92 -0.34 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.09 0.92 6.56 -51.93 -0.34 0.58 16 38 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.40 4.65 8.52 -40.82 -0.35 4.30 16 40 H 0.06 1.60 7.81 -51.93 -0.41 1.19 16 41 H 0.02 0.60 7.02 -51.93 -0.36 0.23 16 42 H 0.27 8.35 6.43 -40.82 -0.26 8.09 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -34.27 366.94 -8.69 -42.95 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.66 Total: 1.11 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.41 Total: -4.68 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.12 Total: -55.11 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.10 Total: 21.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.27 -8.69 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209680043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.678 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds