Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47100 * 2 1 4 4 H 1.09001 * 109.47185 * 55.00970 * 3 2 1 5 5 C 1.52997 * 109.47646 * 295.00575 * 3 2 1 6 6 C 1.53007 * 109.47087 * 175.00267 * 3 2 1 7 7 C 1.53005 * 109.46903 * 185.00350 * 6 3 2 8 8 C 1.50700 * 109.46652 * 180.02562 * 7 6 3 9 9 O 1.21284 * 120.00171 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00450 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88389 * 37.43292 * 11 10 8 13 13 C 1.54910 * 111.00885 * 273.54879 * 11 10 8 14 14 N 1.47420 * 104.83518 * 204.87717 * 13 11 10 15 15 C 1.36935 * 125.65287 * 204.09054 * 14 13 11 16 16 H 1.07996 * 120.00120 * 168.12855 * 15 14 13 17 17 C 1.38816 * 119.99635 * 348.13266 * 15 14 13 18 18 N 1.31621 * 119.99948 * 326.27381 * 17 15 14 19 19 Si 1.86802 * 119.99914 * 145.99645 * 17 15 14 20 20 H 1.48496 * 109.47113 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46970 * 120.00125 * 19 17 15 22 22 H 1.48501 * 109.47141 * 239.99794 * 19 17 15 23 23 C 1.47028 * 108.70211 * 24.35267 * 14 13 11 24 24 C 1.54331 * 107.26619 * 358.58814 * 23 14 13 25 25 H 1.09001 * 110.67142 * 96.52156 * 24 23 14 26 26 C 1.52998 * 110.85313 * 219.67245 * 24 23 14 27 27 H 1.09002 * 109.46772 * 299.99579 * 1 2 3 28 28 H 1.09000 * 109.47388 * 59.99358 * 1 2 3 29 29 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46772 * 240.00421 * 2 1 3 31 31 H 1.09000 * 109.47388 * 120.00642 * 2 1 3 32 32 H 1.08997 * 109.47615 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.46819 * 299.99716 * 5 3 2 34 34 H 1.09002 * 109.47283 * 59.99360 * 5 3 2 35 35 H 1.09000 * 109.46856 * 65.00543 * 6 3 2 36 36 H 1.09005 * 109.46862 * 305.00383 * 6 3 2 37 37 H 1.09000 * 109.47207 * 60.00408 * 7 6 3 38 38 H 1.08993 * 109.47068 * 299.99767 * 7 6 3 39 39 H 0.97004 * 119.99362 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.36676 * 86.03684 * 13 11 10 41 41 H 1.08996 * 110.36087 * 323.71558 * 13 11 10 42 42 H 0.96996 * 119.99512 * 353.97663 * 18 17 15 43 43 H 1.09002 * 109.87711 * 118.12928 * 23 14 13 44 44 H 1.09000 * 109.88319 * 239.29701 * 23 14 13 45 45 H 1.08996 * 109.47499 * 173.69047 * 26 24 23 46 46 H 1.09008 * 109.46590 * 293.69427 * 26 24 23 47 47 H 1.09003 * 109.47165 * 53.68967 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8850 0.2512 8 6 5.5665 2.8868 0.3743 9 8 6.1772 1.8390 0.3623 10 7 6.2313 4.0528 0.4967 11 6 7.6913 4.0545 0.6169 12 1 8.1340 3.2834 -0.0135 13 6 8.1271 3.8825 2.0934 14 7 9.4672 4.4926 2.1650 15 6 10.4317 4.1942 3.0901 16 1 11.4423 4.5484 2.9500 17 6 10.1104 3.4363 4.2078 18 7 8.9191 3.5455 4.7567 19 14 11.3662 2.2558 4.9282 20 1 12.6166 2.3153 4.1295 21 1 11.6577 2.6399 6.3328 22 1 10.8225 0.8743 4.8956 23 6 9.5945 5.4792 1.0823 24 6 8.2763 5.4517 0.2802 25 1 7.6049 6.2420 0.6161 26 6 8.5488 5.5771 -1.2201 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9989 3.1542 -1.3074 33 1 2.0698 1.5877 -2.1491 34 1 0.5489 2.1253 -1.3968 35 1 4.0030 0.9837 -0.7598 36 1 3.8572 0.8799 1.0112 37 1 3.6265 3.3457 1.1366 38 1 3.7723 3.4493 -0.6343 39 1 5.7428 4.8908 0.5058 40 1 8.1773 2.8252 2.3534 41 1 7.4368 4.4046 2.7559 42 1 8.2969 4.2167 4.4356 43 1 9.7543 6.4721 1.5025 44 1 10.4274 5.2109 0.4323 45 1 7.6179 5.4431 -1.7710 46 1 8.9586 6.5644 -1.4335 47 1 9.2643 4.8132 -1.5245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209680044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -49.748678 kcal Electronic energy + Delta-G solvation = -22802.889032 eV Core-core repulsion = 19598.897653 eV Total energy + Delta-G solvation = -3203.991380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.72781 -37.95964 -37.03405 -34.05729 -32.82779 -32.27454 -30.36812 -29.15536 -27.78940 -25.89059 -25.48950 -23.73148 -22.47318 -20.55747 -20.17341 -19.97933 -19.44892 -17.49548 -16.80029 -16.02943 -15.69316 -15.11517 -14.68929 -14.45140 -14.01888 -13.69320 -13.59749 -13.49397 -13.20861 -13.01366 -12.90001 -12.61079 -12.43443 -12.16075 -11.86303 -11.81844 -11.73316 -11.49420 -11.05933 -10.82467 -10.71951 -10.68421 -10.63553 -10.60827 -10.56094 -10.39416 -10.05454 -9.96971 -9.63948 -9.49427 -8.61026 -8.28503 -6.93096 -6.11406 -3.04658 2.93938 3.42856 3.56877 3.61947 3.74344 4.55380 4.63844 4.68380 4.70755 4.92342 5.04095 5.08258 5.20038 5.22608 5.23609 5.30668 5.33348 5.36415 5.37092 5.55162 5.61240 5.67440 5.74524 5.80954 5.82546 5.88077 5.89568 5.91414 5.94616 6.02553 6.07968 6.12657 6.24757 6.27670 6.31905 6.34588 6.60279 6.67420 6.83591 7.03585 7.13226 7.80475 7.83870 8.50805 8.56009 9.03964 9.85903 10.40450 11.23062 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.003762 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.504729 B = 7440.076486 C = 8682.348514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.140 4.140 8 C 0.508 3.492 9 O -0.537 6.537 10 N -0.719 5.719 11 C 0.130 3.870 12 H 0.092 0.908 13 C 0.142 3.858 14 N -0.601 5.601 15 C -0.345 4.345 16 H 0.068 0.932 17 C -0.021 4.021 18 N -0.907 5.907 19 Si 1.061 2.939 20 H -0.292 1.292 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.142 3.858 24 C -0.110 4.110 25 H 0.075 0.925 26 C -0.137 4.137 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.395 0.605 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.268 0.732 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 0.745 -13.099 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.208 4.208 6 C -0.138 4.138 7 C -0.180 4.180 8 C 0.295 3.705 9 O -0.414 6.414 10 N -0.370 5.370 11 C 0.025 3.975 12 H 0.110 0.890 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.472 4.472 16 H 0.086 0.914 17 C -0.223 4.223 18 N -0.547 5.547 19 Si 0.890 3.110 20 H -0.218 1.218 21 H -0.223 1.223 22 H -0.216 1.216 23 C 0.016 3.984 24 C -0.130 4.130 25 H 0.093 0.907 26 C -0.194 4.194 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.229 0.771 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.676 -1.201 -11.886 18.924 hybrid contribution -0.434 1.788 -1.033 2.110 sum -15.110 0.586 -12.920 19.889 Atomic orbital electron populations 1.21825 0.96085 1.01396 1.01747 1.21569 0.95613 0.96397 1.02254 1.21205 0.95420 0.96257 0.98321 0.91165 1.21949 1.01071 1.00460 0.97312 1.21396 0.93892 0.94889 1.03577 1.21731 0.92261 1.00103 1.03928 1.20706 0.90040 0.83773 0.76027 1.90722 1.69922 1.31317 1.49390 1.45959 1.07840 1.08528 1.74680 1.22349 0.78523 0.97247 0.99399 0.88979 1.21765 0.87214 0.98351 0.91179 1.44482 1.13386 1.42411 1.32602 1.19701 0.89229 1.35829 1.02440 0.91409 1.25671 1.01135 1.01820 0.93718 1.70731 1.09541 1.36467 1.37917 0.83633 0.74908 0.77219 0.75218 1.21768 1.22284 1.21568 1.21356 0.93695 0.93145 0.90242 1.22418 0.98538 0.96348 0.95651 0.90713 1.21734 1.01225 1.01657 0.94825 0.92837 0.92623 0.92997 0.91990 0.91822 0.92605 0.92712 0.92665 0.91252 0.91013 0.89092 0.89141 0.77123 0.92577 0.95899 0.92160 0.95800 0.95233 0.93013 0.92677 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -1.04 5.40 -26.73 -0.14 -1.19 16 3 C -0.09 -0.83 2.39 -90.62 -0.22 -1.04 16 4 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -1.15 8.70 37.16 0.32 -0.83 16 6 C -0.10 -1.13 3.97 -26.72 -0.11 -1.24 16 7 C -0.14 -1.55 5.46 -27.88 -0.15 -1.70 16 8 C 0.51 8.12 7.83 -10.99 -0.09 8.03 16 9 O -0.54 -11.14 15.73 5.55 0.09 -11.06 16 10 N -0.72 -10.93 5.23 -51.73 -0.27 -11.20 16 11 C 0.13 2.46 2.77 -65.78 -0.18 2.28 16 12 H 0.09 1.92 7.63 -51.93 -0.40 1.52 16 13 C 0.14 3.48 5.02 -2.53 -0.01 3.46 16 14 N -0.60 -15.80 3.33 -170.07 -0.57 -16.37 16 15 C -0.34 -10.09 9.97 -15.06 -0.15 -10.24 16 16 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 17 C -0.02 -0.63 4.96 -17.43 -0.09 -0.71 16 18 N -0.91 -28.29 12.86 55.49 0.71 -27.58 16 19 Si 1.06 26.47 30.03 -169.99 -5.10 21.37 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.14 2.98 6.85 -3.06 -0.02 2.96 16 24 C -0.11 -1.82 3.16 -88.78 -0.28 -2.10 16 25 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 26 C -0.14 -1.82 9.16 37.16 0.34 -1.48 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 6.56 -51.93 -0.34 0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.40 6.56 -51.93 -0.34 0.05 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.38 6.57 -51.93 -0.34 0.04 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 36 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.78 6.56 -51.93 -0.34 0.44 16 39 H 0.40 4.64 8.52 -40.82 -0.35 4.30 16 40 H 0.06 1.61 7.81 -51.93 -0.41 1.20 16 41 H 0.02 0.60 7.02 -51.93 -0.36 0.23 16 42 H 0.27 8.37 6.43 -40.82 -0.26 8.11 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -34.25 366.95 -8.69 -42.93 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.66 Total: 0.92 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.41 Total: -4.56 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.12 Total: -55.14 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -5.10 Total: 21.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.25 -8.69 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209680044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.814 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds