Wall clock time and date at job start Tue Mar 31 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09000 * 109.47140 * 305.00180 * 3 2 1 5 5 C 1.53006 * 109.47164 * 65.00128 * 3 2 1 6 6 C 1.52999 * 109.47592 * 184.99834 * 3 2 1 7 7 C 1.52993 * 109.47522 * 175.00036 * 6 3 2 8 8 C 1.50699 * 109.47204 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00137 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00250 * 180.02562 * 8 7 6 11 11 C 1.46920 * 120.62692 * 359.71786 * 10 8 7 12 12 C 1.52757 * 109.01180 * 233.58414 * 11 10 8 13 13 C 1.53045 * 109.38287 * 305.59214 * 12 11 10 14 14 C 1.53035 * 109.53710 * 61.24012 * 13 12 11 15 15 H 1.08997 * 109.53106 * 58.60212 * 14 13 12 16 16 N 1.46503 * 109.49828 * 178.68440 * 14 13 12 17 17 C 1.36933 * 119.99691 * 274.83820 * 16 14 13 18 18 H 1.07997 * 120.00375 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99526 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99455 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00369 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47039 * 89.99842 * 21 19 17 23 23 H 1.48500 * 109.47383 * 210.00386 * 21 19 17 24 24 H 1.48501 * 109.46836 * 330.00338 * 21 19 17 25 25 C 1.46926 * 120.63290 * 180.02562 * 10 8 7 26 26 H 1.08998 * 109.47375 * 59.99781 * 1 2 3 27 27 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46931 * 300.00161 * 1 2 3 29 29 H 1.09001 * 109.47456 * 239.99861 * 2 1 3 30 30 H 1.08998 * 109.47375 * 120.00219 * 2 1 3 31 31 H 1.09000 * 109.47050 * 59.99996 * 5 3 2 32 32 H 1.09001 * 109.46801 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46998 * 299.99705 * 5 3 2 34 34 H 1.09002 * 109.47016 * 295.00471 * 6 3 2 35 35 H 1.09000 * 109.46709 * 55.00035 * 6 3 2 36 36 H 1.09002 * 109.47330 * 300.00242 * 7 6 3 37 37 H 1.09000 * 109.47130 * 60.00256 * 7 6 3 38 38 H 1.09006 * 109.58815 * 353.42058 * 11 10 8 39 39 H 1.08999 * 109.58727 * 113.84627 * 11 10 8 40 40 H 1.09006 * 109.56937 * 185.55197 * 12 11 10 41 41 H 1.09003 * 109.36053 * 65.50288 * 12 11 10 42 42 H 1.08993 * 109.45776 * 301.21450 * 13 12 11 43 43 H 1.09009 * 109.45975 * 181.25755 * 13 12 11 44 44 H 0.97003 * 119.99681 * 94.83316 * 16 14 13 45 45 H 0.97003 * 119.99860 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58040 * 246.15780 * 25 10 8 47 47 H 1.09002 * 109.58469 * 6.43249 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8867 -0.3755 9 8 6.1769 1.8389 -0.3654 10 7 6.2311 4.0528 -0.4980 11 6 5.5049 5.3298 -0.5180 12 6 5.9104 6.1134 -1.7650 13 6 7.4338 6.2555 -1.8025 14 6 8.0757 4.8680 -1.8718 15 1 7.7184 4.3451 -2.7589 16 7 9.5326 5.0060 -1.9393 17 6 10.1465 5.2022 -3.1475 18 1 9.5567 5.2549 -4.0506 19 6 11.5270 5.3336 -3.2113 20 7 12.1170 5.5217 -4.3727 21 14 12.5471 5.2433 -1.6491 22 1 12.9417 3.8342 -1.3964 23 1 13.7652 6.0783 -1.8043 24 1 11.7452 5.7456 -0.5046 25 6 7.6951 4.0706 -0.6208 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0699 1.5875 2.1492 32 1 1.9983 3.1543 1.3072 33 1 0.5489 2.1253 1.3970 34 1 4.0029 0.9836 0.7597 35 1 3.8570 0.8801 -1.0113 36 1 3.6264 3.3458 -1.1364 37 1 3.7723 3.4493 0.6345 38 1 4.4318 5.1397 -0.5406 39 1 5.7570 5.9076 0.3712 40 1 5.4533 7.1026 -1.7394 41 1 5.5729 5.5791 -2.6532 42 1 7.7729 6.7680 -0.9023 43 1 7.7232 6.8337 -2.6802 44 1 10.0624 4.9584 -1.1281 45 1 13.0816 5.6138 -4.4173 46 1 8.1298 4.5434 0.2600 47 1 8.0668 3.0497 -0.7085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210264037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:28 Heat of formation + Delta-G solvation = -52.842368 kcal Electronic energy + Delta-G solvation = -22712.890726 eV Core-core repulsion = 19508.765193 eV Total energy + Delta-G solvation = -3204.125532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.13786 -37.84730 -37.00149 -34.64259 -32.61423 -32.10461 -31.38863 -29.45025 -28.53475 -26.28654 -24.97189 -23.71882 -22.40933 -21.92736 -20.20843 -19.99100 -18.79295 -17.64579 -17.07255 -15.93526 -15.72075 -15.26944 -14.78251 -14.65962 -14.16253 -13.99042 -13.82491 -13.68792 -13.60645 -13.16470 -12.90576 -12.74957 -12.53344 -12.44619 -12.21338 -11.94057 -11.89877 -11.36688 -11.16537 -11.07239 -11.00963 -10.81759 -10.76544 -10.68340 -10.62892 -10.50594 -10.40984 -10.09325 -9.63855 -9.57761 -8.94146 -8.45420 -7.30078 -5.78133 -3.14628 2.74494 3.08515 3.37645 3.41085 3.45718 4.37110 4.52409 4.58405 4.61149 4.78616 4.84322 4.97652 5.07120 5.09824 5.15041 5.24913 5.26864 5.28711 5.34430 5.41050 5.49229 5.51392 5.54369 5.64681 5.68450 5.72045 5.74240 5.79839 5.82881 5.84080 5.92345 6.02225 6.04304 6.10997 6.17658 6.23805 6.30748 6.45055 6.61801 6.79268 6.94327 7.54549 7.96793 8.30640 8.40346 9.17932 9.90401 10.09414 11.39976 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031686 B = 0.003104 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.448483 B = 9017.813337 C = 9315.052060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.511 3.489 9 O -0.543 6.543 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.138 4.138 14 C 0.173 3.827 15 H 0.058 0.942 16 N -0.745 5.745 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.102 3.898 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.061 0.939 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.017 -3.695 11.586 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.208 4.208 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.299 3.701 9 O -0.420 6.420 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.063 3.937 15 H 0.076 0.924 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.021 4.021 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.610 -4.237 11.339 26.533 hybrid contribution 0.915 0.245 0.984 1.366 sum -22.695 -3.991 12.323 26.131 Atomic orbital electron populations 1.21825 0.96036 1.01437 1.01789 1.21565 0.95665 0.96355 1.02217 1.21204 0.95320 0.96286 0.98374 0.91160 1.21953 1.01153 1.00459 0.97276 1.21409 0.94007 0.94863 1.03509 1.21756 0.92219 1.00002 1.03912 1.20728 0.90142 0.83187 0.76056 1.90695 1.69922 1.31069 1.50358 1.48123 1.07667 1.06062 1.72287 1.21684 0.96206 0.84625 0.99003 1.21863 0.98186 0.99751 0.97508 1.22242 0.92625 1.00457 1.02469 1.20442 0.84932 0.92914 0.95454 0.92359 1.42677 1.01027 1.88472 1.06617 1.19031 0.90669 1.41923 0.85667 0.89185 1.24672 0.96313 1.01771 0.96295 1.69701 1.09390 1.56160 1.22783 0.86550 0.80311 0.77821 0.83844 1.20976 1.21729 1.20320 1.21971 0.78539 1.02886 0.98663 0.92830 0.92977 0.92577 0.91885 0.91976 0.92680 0.92591 0.92606 0.91235 0.91124 0.89039 0.89005 0.90130 0.91511 0.91157 0.91689 0.92606 0.91092 0.80603 0.93021 0.92052 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.12 -0.89 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.70 2.39 -90.62 -0.22 -0.91 16 4 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -1.00 8.70 37.16 0.32 -0.68 16 6 C -0.10 -0.98 3.97 -26.74 -0.11 -1.09 16 7 C -0.14 -1.34 3.80 -27.89 -0.11 -1.45 16 8 C 0.51 7.35 7.70 -10.98 -0.08 7.26 16 9 O -0.54 -10.07 15.39 5.56 0.09 -9.98 16 10 N -0.61 -8.55 2.98 -173.05 -0.52 -9.06 16 11 C 0.11 1.14 6.31 -3.94 -0.02 1.12 16 12 C -0.13 -1.61 6.06 -26.83 -0.16 -1.78 16 13 C -0.14 -2.26 5.47 -26.69 -0.15 -2.40 16 14 C 0.17 3.34 2.92 -67.83 -0.20 3.14 16 15 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 16 N -0.75 -17.65 4.93 -53.33 -0.26 -17.91 16 17 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 21 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 25 C 0.10 1.75 5.91 -3.73 -0.02 1.73 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 33 H 0.05 0.33 6.57 -51.93 -0.34 -0.01 16 34 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.09 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16 38 H 0.08 0.62 5.94 -51.93 -0.31 0.32 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 44 H 0.36 8.40 5.66 -40.82 -0.23 8.17 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.79 7.00 -51.93 -0.36 1.43 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -32.88 360.66 -8.56 -41.44 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.58 Total: 4.80 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.78 Total: -3.64 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.00 Total: -55.57 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.88 -8.56 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210264037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.398 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds