Wall clock time and date at job start Tue Mar 31 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46897 * 2 1 4 4 H 1.09002 * 109.47167 * 305.00179 * 3 2 1 5 5 C 1.53004 * 109.47091 * 65.00262 * 3 2 1 6 6 C 1.53002 * 109.46958 * 184.99836 * 3 2 1 7 7 C 1.52995 * 109.47050 * 174.99840 * 6 3 2 8 8 C 1.50704 * 109.47210 * 180.02562 * 7 6 3 9 9 O 1.21285 * 119.99847 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00168 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.63030 * 359.97438 * 10 8 7 12 12 C 1.53200 * 108.77279 * 126.37310 * 11 10 8 13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10 14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11 15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12 16 16 N 1.46501 * 109.49630 * 181.31171 * 14 13 12 17 17 C 1.36937 * 120.00201 * 85.00078 * 16 14 13 18 18 H 1.07998 * 119.99752 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99989 * 179.97438 * 17 16 14 20 20 N 1.31613 * 120.00206 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46847 * 90.00596 * 21 19 17 23 23 H 1.48498 * 109.47050 * 209.99618 * 21 19 17 24 24 H 1.48491 * 109.47203 * 330.00227 * 21 19 17 25 25 C 1.46928 * 120.63178 * 179.97438 * 10 8 7 26 26 H 1.08999 * 109.46867 * 59.99939 * 1 2 3 27 27 H 1.08999 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47218 * 300.00058 * 1 2 3 29 29 H 1.08997 * 109.46816 * 240.00604 * 2 1 3 30 30 H 1.08999 * 109.46867 * 120.00061 * 2 1 3 31 31 H 1.09001 * 109.46892 * 59.99467 * 5 3 2 32 32 H 1.08999 * 109.47160 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46675 * 299.99785 * 5 3 2 34 34 H 1.09002 * 109.46651 * 55.00323 * 6 3 2 35 35 H 1.08991 * 109.47046 * 295.00546 * 6 3 2 36 36 H 1.09002 * 109.46999 * 60.00697 * 7 6 3 37 37 H 1.08996 * 109.47783 * 300.00735 * 7 6 3 38 38 H 1.08998 * 109.58425 * 6.59260 * 11 10 8 39 39 H 1.08995 * 109.70793 * 246.22878 * 11 10 8 40 40 H 1.08997 * 109.49280 * 294.68615 * 12 11 10 41 41 H 1.08996 * 109.52417 * 174.60413 * 12 11 10 42 42 H 1.09002 * 109.46050 * 58.65698 * 13 12 11 43 43 H 1.09004 * 109.46034 * 178.62914 * 13 12 11 44 44 H 0.96996 * 119.99546 * 264.99835 * 16 14 13 45 45 H 0.97004 * 120.00373 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58766 * 353.41859 * 25 10 8 47 47 H 1.09002 * 109.58364 * 113.69954 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4444 -0.1257 7 6 4.0645 2.8850 -0.2511 8 6 5.5664 2.8868 -0.3756 9 8 6.1770 1.8390 -0.3645 10 7 6.2310 4.0528 -0.4981 11 6 5.5052 5.3303 -0.5126 12 6 6.1020 6.2486 0.5587 13 6 7.6096 6.3795 0.3303 14 6 8.2671 5.0029 0.4529 15 1 8.0638 4.5894 1.4406 16 7 9.7141 5.1338 0.2652 17 6 10.5149 5.4649 1.3255 18 1 10.0797 5.6300 2.3000 19 6 11.8860 5.5883 1.1477 20 7 12.4164 5.3876 -0.0400 21 14 12.9784 6.0407 2.5940 22 1 13.4293 4.8032 3.2798 23 1 14.1607 6.7942 2.1046 24 1 12.2135 6.8843 3.5471 25 6 7.6951 4.0708 -0.6198 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5874 2.1492 32 1 1.9990 3.1541 1.3076 33 1 0.5489 2.1252 1.3969 34 1 3.8571 0.8801 -1.0113 35 1 4.0029 0.9836 0.7596 36 1 3.7723 3.4493 0.6345 37 1 3.6264 3.3458 -1.1364 38 1 4.4514 5.1542 -0.2970 39 1 5.6047 5.7985 -1.4918 40 1 5.9191 5.8231 1.5454 41 1 5.6376 7.2325 0.4949 42 1 7.7923 6.7819 -0.6661 43 1 8.0329 7.0518 1.0767 44 1 10.1049 4.9858 -0.6102 45 1 13.3745 5.4742 -0.1644 46 1 8.0862 3.0637 -0.4751 47 1 7.9751 4.4329 -1.6090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210264038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:31 Heat of formation + Delta-G solvation = -56.981904 kcal Electronic energy + Delta-G solvation = -22676.603543 eV Core-core repulsion = 19472.298507 eV Total energy + Delta-G solvation = -3204.305036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.04712 -37.75976 -36.92391 -34.47488 -32.58334 -32.04991 -31.19927 -29.23491 -28.16990 -26.21158 -24.90705 -23.82570 -22.39619 -22.02877 -20.14647 -19.91525 -18.68749 -17.18075 -17.00461 -15.91204 -15.64970 -15.16062 -14.77429 -14.55076 -14.09205 -14.01812 -13.81072 -13.61128 -13.31437 -13.09337 -12.91831 -12.87497 -12.44630 -12.25541 -12.13660 -11.87186 -11.85866 -11.13543 -11.09017 -10.93836 -10.90752 -10.77921 -10.72951 -10.66654 -10.56570 -10.39909 -10.34125 -10.07267 -9.72945 -9.50235 -8.90893 -8.35929 -6.98392 -5.77383 -3.06950 2.81906 3.17419 3.43752 3.48851 3.50228 4.41495 4.56432 4.58978 4.64287 4.83372 4.91786 5.01499 5.11466 5.15383 5.19963 5.29740 5.30491 5.33226 5.42146 5.53469 5.54718 5.58928 5.67070 5.72423 5.76625 5.78444 5.81870 5.84130 5.86928 5.88208 6.04326 6.05996 6.17653 6.20706 6.25249 6.28685 6.40155 6.56293 6.73653 6.89521 7.05639 7.63813 7.69431 8.37731 8.41442 9.51746 10.07320 10.42446 11.45146 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.002984 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.330941 B = 9381.930936 C = 9608.184711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.106 3.894 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.091 0.909 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.665 -3.514 -1.375 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.017 4.017 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.229 -4.036 -1.210 24.592 hybrid contribution 0.847 0.476 0.464 1.077 sum -23.381 -3.561 -0.745 23.663 Atomic orbital electron populations 1.21827 0.96061 1.01410 1.01777 1.21569 0.95636 0.96390 1.02211 1.21202 0.95342 0.96233 0.98361 0.91255 1.21957 1.01105 1.00543 0.97293 1.21408 0.93971 0.94900 1.03508 1.21754 0.92347 0.99942 1.03853 1.20708 0.90105 0.83295 0.76124 1.90696 1.69920 1.31123 1.50389 1.48156 1.07834 1.05869 1.72249 1.21751 0.95689 0.84291 0.99772 1.21937 0.97907 0.98793 0.98617 1.22281 0.92587 1.00978 1.01936 1.20471 0.85547 0.91963 0.96230 0.93297 1.42316 0.99719 1.83591 1.10619 1.19201 0.88622 1.39283 0.89835 0.91186 1.24750 0.96759 1.02600 0.96773 1.69659 1.11232 1.56085 1.21026 0.86185 0.80372 0.77942 0.81657 1.21670 1.21763 1.20777 1.21976 0.77785 1.02494 0.99472 0.92887 0.92995 0.92541 0.91952 0.91917 0.92603 0.92544 0.92630 0.91242 0.91133 0.88907 0.89272 0.90290 0.91466 0.91899 0.91383 0.92494 0.91599 0.78204 0.93462 0.89013 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.05 16 3 C -0.09 -0.72 2.39 -90.62 -0.22 -0.94 16 4 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -1.09 8.70 37.16 0.32 -0.77 16 6 C -0.10 -1.02 3.97 -26.73 -0.11 -1.12 16 7 C -0.14 -1.41 3.80 -27.88 -0.11 -1.52 16 8 C 0.51 7.67 7.70 -10.99 -0.08 7.58 16 9 O -0.54 -10.47 15.40 5.55 0.09 -10.38 16 10 N -0.61 -9.01 2.97 -172.76 -0.51 -9.52 16 11 C 0.11 1.22 6.34 -3.70 -0.02 1.19 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 13 C -0.14 -2.34 5.47 -26.69 -0.15 -2.49 16 14 C 0.17 3.40 2.92 -67.81 -0.20 3.21 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.20 5.12 -53.31 -0.27 -18.48 16 17 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.37 5.50 -17.44 -0.10 -0.46 16 20 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.11 1.92 5.90 -3.71 -0.02 1.90 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.05 0.35 6.57 -51.93 -0.34 0.01 16 34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.09 0.81 6.11 -51.93 -0.32 0.49 16 37 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.09 1.90 7.00 -51.93 -0.36 1.54 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -32.01 363.81 -8.91 -40.92 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.62 Total: 5.75 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.77 Total: -3.74 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.06 Total: -55.56 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.01 -8.91 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210264038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.057 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds