Wall clock time and date at job start Tue Mar 31 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.09008 * 109.46890 * 55.00384 * 3 2 1 5 5 C 1.52992 * 109.47288 * 295.00057 * 3 2 1 6 6 C 1.53000 * 109.46792 * 174.99546 * 3 2 1 7 7 C 1.53001 * 109.47008 * 184.99844 * 6 3 2 8 8 C 1.50704 * 109.47089 * 180.02562 * 7 6 3 9 9 O 1.21284 * 120.00126 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00046 * 180.02562 * 8 7 6 11 11 C 1.46930 * 120.63061 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.77695 * 233.58873 * 11 10 8 13 13 C 1.53045 * 109.30969 * 305.36626 * 12 11 10 14 14 C 1.53033 * 109.54155 * 61.36742 * 13 12 11 15 15 H 1.09005 * 109.52577 * 58.59455 * 14 13 12 16 16 N 1.46494 * 109.50279 * 178.68377 * 14 13 12 17 17 C 1.36945 * 119.99612 * 274.83869 * 16 14 13 18 18 H 1.07999 * 120.00077 * 359.97438 * 17 16 14 19 19 C 1.38812 * 119.99637 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99539 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00216 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46712 * 90.00052 * 21 19 17 23 23 H 1.48499 * 109.46916 * 209.99467 * 21 19 17 24 24 H 1.48492 * 109.46909 * 330.00070 * 21 19 17 25 25 C 1.46926 * 120.63085 * 180.02562 * 10 8 7 26 26 H 1.08999 * 109.46880 * 299.99796 * 1 2 3 27 27 H 1.09000 * 109.46796 * 59.99800 * 1 2 3 28 28 H 1.08997 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46816 * 239.99799 * 2 1 3 30 30 H 1.09000 * 109.46796 * 120.00200 * 2 1 3 31 31 H 1.09001 * 109.47216 * 300.00329 * 5 3 2 32 32 H 1.08996 * 109.47387 * 59.99938 * 5 3 2 33 33 H 1.09003 * 109.47143 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46908 * 65.00368 * 6 3 2 35 35 H 1.09000 * 109.47533 * 305.00617 * 6 3 2 36 36 H 1.08999 * 109.46858 * 60.00493 * 7 6 3 37 37 H 1.08997 * 109.47171 * 300.00480 * 7 6 3 38 38 H 1.08994 * 109.58642 * 353.37506 * 11 10 8 39 39 H 1.08997 * 109.58627 * 113.80294 * 11 10 8 40 40 H 1.08998 * 109.49634 * 65.31857 * 12 11 10 41 41 H 1.08999 * 109.49768 * 185.37935 * 12 11 10 42 42 H 1.08995 * 109.45857 * 301.33806 * 13 12 11 43 43 H 1.09004 * 109.45360 * 181.38686 * 13 12 11 44 44 H 0.96995 * 120.00290 * 95.10760 * 16 14 13 45 45 H 0.97005 * 119.99727 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58612 * 6.62730 * 25 10 8 47 47 H 1.09005 * 109.70347 * 246.26393 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 6 4.0646 2.8849 0.2512 8 6 5.5666 2.8866 0.3745 9 8 6.1773 1.8388 0.3628 10 7 6.2312 4.0525 0.4979 11 6 5.5054 5.3299 0.5143 12 6 6.1019 6.2498 -0.5557 13 6 7.6095 6.3806 -0.3274 14 6 8.2674 5.0045 -0.4523 15 1 8.0644 4.5920 -1.4406 16 7 9.7144 5.1353 -0.2647 17 6 10.5152 5.4651 -1.3256 18 1 10.0800 5.6283 -2.3004 19 6 11.8862 5.5896 -1.1478 20 7 12.6558 5.9071 -2.1673 21 14 12.6388 5.3080 0.5386 22 1 13.0003 3.8753 0.6863 23 1 13.8580 6.1435 0.6823 24 1 11.6563 5.6814 1.5876 25 6 7.6954 4.0704 0.6185 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0699 1.5875 -2.1491 32 1 0.5491 2.1253 -1.3969 33 1 1.9991 3.1541 -1.3074 34 1 4.0030 0.9835 -0.7595 35 1 3.8571 0.8798 1.0114 36 1 3.6265 3.3456 1.1366 37 1 3.7724 3.4492 -0.6344 38 1 4.4515 5.1541 0.2987 39 1 5.6073 5.7955 1.4945 40 1 5.9188 5.8259 -1.5431 41 1 5.6368 7.2334 -0.4902 42 1 7.7924 6.7815 0.6695 43 1 8.0325 7.0543 -1.0727 44 1 10.1057 4.9846 0.6099 45 1 13.6140 5.9937 -2.0431 46 1 8.0865 3.0637 0.4716 47 1 7.9784 4.4319 1.6072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210264039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:34 Heat of formation + Delta-G solvation = -52.815989 kcal Electronic energy + Delta-G solvation = -22732.613160 eV Core-core repulsion = 19528.488772 eV Total energy + Delta-G solvation = -3204.124388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13286 -37.83774 -36.99597 -34.63879 -32.61373 -32.09904 -31.37637 -29.44334 -28.52617 -26.27805 -24.96986 -23.72005 -22.40851 -21.93075 -20.18321 -20.00755 -18.79681 -17.64537 -17.06228 -15.94903 -15.75635 -15.19367 -14.80236 -14.53838 -14.32361 -14.03685 -13.85151 -13.65986 -13.45653 -13.15787 -12.96458 -12.74176 -12.51017 -12.44472 -12.20620 -11.93038 -11.89434 -11.36380 -11.16161 -11.09110 -11.00795 -10.80900 -10.75993 -10.70228 -10.61346 -10.50338 -10.40890 -10.09388 -9.63788 -9.57761 -8.94078 -8.45320 -7.30028 -5.78132 -3.14675 2.74573 3.08458 3.37690 3.41067 3.45720 4.37224 4.52722 4.58403 4.61672 4.79110 4.83440 4.98017 5.06701 5.10272 5.16451 5.24907 5.26301 5.29816 5.34710 5.41135 5.49211 5.52298 5.53476 5.64757 5.68586 5.72086 5.76043 5.79666 5.84056 5.85034 5.92222 6.01990 6.04413 6.11076 6.18037 6.24472 6.30797 6.45143 6.61760 6.79360 6.94413 7.54549 7.96829 8.30657 8.40342 9.17953 9.90413 10.09354 11.39955 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031418 B = 0.003130 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.987375 B = 8944.486568 C = 9259.653975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.511 3.489 9 O -0.543 6.543 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.173 3.827 15 H 0.058 0.942 16 N -0.746 5.746 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.102 3.898 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.093 0.907 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.501 -4.761 6.454 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.299 3.701 9 O -0.421 6.421 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.063 3.937 15 H 0.076 0.924 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.021 4.021 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.054 -5.269 6.211 26.345 hybrid contribution 0.741 0.111 1.152 1.374 sum -24.313 -5.159 7.362 25.922 Atomic orbital electron populations 1.21827 0.96041 1.01428 1.01787 1.21570 0.95659 0.96370 1.02209 1.21198 0.95291 0.96256 0.98383 0.91266 1.21955 1.01143 1.00542 0.97279 1.21412 0.94033 0.94840 1.03512 1.21757 0.92189 1.00022 1.03922 1.20727 0.90168 0.83224 0.76001 1.90696 1.69925 1.31122 1.50313 1.48118 1.07588 1.06018 1.72408 1.21779 0.95810 0.84182 0.99775 1.21934 0.97652 0.98923 0.98749 1.22238 0.92842 1.00683 1.02019 1.20443 0.84255 0.92233 0.96801 0.92380 1.42676 1.01499 1.85210 1.09415 1.19032 0.88625 1.39611 0.90017 0.89186 1.24672 0.95961 1.01533 0.96882 1.69704 1.04400 1.54567 1.29361 0.86551 0.78865 0.77984 0.85137 1.20980 1.21726 1.20311 1.21969 0.78318 1.02512 0.99277 0.92888 0.92523 0.92983 0.91897 0.91975 0.92569 0.92605 0.92537 0.91092 0.91270 0.89239 0.88809 0.90126 0.91474 0.91672 0.91196 0.92606 0.91097 0.80606 0.93023 0.88898 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.69 2.39 -90.62 -0.22 -0.91 16 4 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 5 C -0.15 -1.06 8.70 37.15 0.32 -0.73 16 6 C -0.10 -0.98 3.97 -26.73 -0.11 -1.09 16 7 C -0.14 -1.34 3.80 -27.88 -0.11 -1.45 16 8 C 0.51 7.35 7.70 -10.99 -0.08 7.26 16 9 O -0.54 -10.07 15.40 5.55 0.09 -9.98 16 10 N -0.61 -8.54 2.97 -172.78 -0.51 -9.06 16 11 C 0.11 1.14 6.34 -3.71 -0.02 1.11 16 12 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 13 C -0.14 -2.25 5.47 -26.69 -0.15 -2.40 16 14 C 0.17 3.34 2.92 -67.83 -0.20 3.14 16 15 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 16 N -0.75 -17.65 4.93 -53.32 -0.26 -17.91 16 17 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 21 Si 0.88 22.22 27.73 -169.99 -4.71 17.51 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 25 C 0.10 1.75 5.90 -3.72 -0.02 1.72 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.34 6.56 -51.93 -0.34 0.00 16 33 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.09 0.69 7.94 -51.93 -0.41 0.27 16 37 H 0.09 0.78 6.12 -51.93 -0.32 0.46 16 38 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.36 8.40 5.66 -40.82 -0.23 8.17 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.09 1.79 7.01 -51.93 -0.36 1.43 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -32.88 360.70 -8.55 -41.44 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.58 Total: 4.85 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.78 Total: -3.68 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.00 Total: -55.56 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.88 -8.55 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210264039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.381 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds