Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46724 * 2 1 4 4 H 1.09004 * 109.47654 * 55.00374 * 3 2 1 5 5 C 1.52999 * 109.47480 * 294.99987 * 3 2 1 6 6 C 1.53005 * 109.46569 * 174.99981 * 3 2 1 7 7 C 1.53003 * 109.46804 * 185.00253 * 6 3 2 8 8 C 1.50705 * 109.47206 * 180.02562 * 7 6 3 9 9 O 1.21284 * 119.99639 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00202 * 180.02562 * 8 7 6 11 11 C 1.46931 * 120.63145 * 359.97034 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09000 * 109.49863 * 301.42271 * 14 13 12 16 16 N 1.46490 * 109.50100 * 181.32318 * 14 13 12 17 17 C 1.36941 * 120.00141 * 84.99448 * 16 14 13 18 18 H 1.07996 * 119.99953 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00322 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00324 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47570 * 59.99903 * 21 19 17 23 23 H 1.48502 * 109.47482 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46896 * 299.99900 * 21 19 17 25 25 C 1.46919 * 120.63242 * 179.97438 * 10 8 7 26 26 H 1.09004 * 109.47103 * 299.99925 * 1 2 3 27 27 H 1.08998 * 109.46813 * 59.99734 * 1 2 3 28 28 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46708 * 240.00322 * 2 1 3 30 30 H 1.08998 * 109.46813 * 120.00266 * 2 1 3 31 31 H 1.09005 * 109.46810 * 299.99846 * 5 3 2 32 32 H 1.08999 * 109.47095 * 60.00177 * 5 3 2 33 33 H 1.09003 * 109.47168 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47210 * 65.00403 * 6 3 2 35 35 H 1.08992 * 109.47382 * 304.99692 * 6 3 2 36 36 H 1.08997 * 109.47595 * 59.99971 * 7 6 3 37 37 H 1.09004 * 109.46974 * 300.00092 * 7 6 3 38 38 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 39 39 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 40 40 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 41 41 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 42 42 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 43 43 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 44 44 H 0.97000 * 120.00144 * 265.00314 * 16 14 13 45 45 H 0.97003 * 119.99880 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.59005 * 113.79701 * 25 10 8 47 47 H 1.09002 * 109.70256 * 353.43937 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0644 2.8850 0.2512 8 6 5.5664 2.8869 0.3744 9 8 6.1771 1.8391 0.3635 10 7 6.2310 4.0529 0.4978 11 6 5.5052 5.3303 0.5132 12 6 5.9111 6.1127 1.7661 13 6 7.4345 6.2553 1.8023 14 6 8.0767 4.8678 1.8704 15 1 7.7195 4.3448 2.7575 16 7 9.5335 5.0059 1.9369 17 6 10.1481 5.2051 3.1443 18 1 9.5587 5.2600 4.0476 19 6 11.5285 5.3365 3.2072 20 7 12.2467 5.2701 2.1062 21 14 12.3669 5.6075 4.8543 22 1 12.0743 4.4623 5.7532 23 1 13.8339 5.7157 4.6513 24 1 11.8588 6.8608 5.4680 25 6 7.6950 4.0708 0.6195 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0699 1.5876 -2.1491 32 1 0.5489 2.1253 -1.3969 33 1 1.9989 3.1542 -1.3075 34 1 4.0029 0.9836 -0.7597 35 1 3.8570 0.8801 1.0113 36 1 3.6264 3.3458 1.1365 37 1 3.7722 3.4493 -0.6344 38 1 5.7603 5.9063 -0.3762 39 1 4.4319 5.1405 0.5302 40 1 5.5746 5.5779 2.6542 41 1 5.4537 7.1018 1.7412 42 1 7.7245 6.8331 2.6798 43 1 7.7727 6.7681 0.9018 44 1 10.0629 4.9564 1.1256 45 1 13.2114 5.3624 2.1502 46 1 8.1291 4.5440 -0.2613 47 1 8.0690 3.0508 0.7080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210264040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = -56.907130 kcal Electronic energy + Delta-G solvation = -22654.452901 eV Core-core repulsion = 19450.151107 eV Total energy + Delta-G solvation = -3204.301793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.04668 -37.76275 -36.92472 -34.47385 -32.58210 -32.04780 -31.19843 -29.23900 -28.17133 -26.21511 -24.90699 -23.82284 -22.39561 -22.02742 -20.16611 -19.89634 -18.68579 -17.17781 -17.01627 -15.88620 -15.61374 -15.23171 -14.83297 -14.52519 -14.05964 -13.92087 -13.76367 -13.66098 -13.45273 -13.11071 -12.89062 -12.81340 -12.46511 -12.26054 -12.13669 -11.87429 -11.86596 -11.14950 -11.07742 -10.92523 -10.89132 -10.78574 -10.73310 -10.65424 -10.58163 -10.40529 -10.33743 -10.09528 -9.72522 -9.50104 -8.90254 -8.35787 -6.98315 -5.77083 -3.06717 2.81962 3.17470 3.44274 3.48744 3.49719 4.41441 4.56231 4.59167 4.64014 4.83063 4.93124 5.00938 5.11462 5.14895 5.18925 5.29644 5.30566 5.32724 5.42338 5.53657 5.54482 5.58451 5.67273 5.72291 5.76635 5.77519 5.82397 5.83698 5.85824 5.88276 6.04804 6.05806 6.17696 6.20491 6.25315 6.28349 6.40207 6.56387 6.73724 6.89716 7.05728 7.63926 7.69127 8.37867 8.41739 9.51942 10.07527 10.42623 11.45374 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.002964 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.689159 B = 9444.892195 C = 9738.406197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.509 3.491 9 O -0.544 6.544 10 N -0.607 5.607 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.106 3.894 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.998 -3.091 -6.329 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.208 4.208 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.017 4.017 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.579 -3.642 -6.164 24.642 hybrid contribution 0.745 0.423 0.662 1.083 sum -22.834 -3.220 -5.502 23.707 Atomic orbital electron populations 1.21828 0.96060 1.01415 1.01777 1.21567 0.95640 0.96380 1.02215 1.21204 0.95361 0.96251 0.98361 0.91203 1.21952 1.01113 1.00492 0.97284 1.21409 0.93955 0.94912 1.03503 1.21756 0.92367 0.99931 1.03843 1.20709 0.90085 0.83268 0.76171 1.90696 1.69925 1.31084 1.50425 1.48153 1.07900 1.05927 1.72124 1.21758 0.96091 0.84699 0.98951 1.21936 0.98392 0.99563 0.97353 1.22283 0.92394 1.00837 1.02274 1.20462 0.86186 0.92561 0.95018 0.93308 1.42305 0.99578 1.86726 1.07619 1.19157 0.89926 1.41682 0.86252 0.91238 1.24751 0.96276 1.02774 0.97057 1.69654 1.05530 1.56911 1.25933 0.86257 0.78531 0.77986 0.83338 1.21232 1.21668 1.21277 1.21959 0.78026 1.02873 0.98870 0.92849 0.92576 0.92991 0.91957 0.91905 0.92664 0.92627 0.92575 0.91208 0.91167 0.89138 0.89045 0.91489 0.90268 0.91885 0.91385 0.91598 0.92499 0.78202 0.93410 0.91869 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.72 2.39 -90.62 -0.22 -0.94 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -1.04 8.70 37.16 0.32 -0.72 16 6 C -0.10 -1.02 3.97 -26.73 -0.11 -1.12 16 7 C -0.14 -1.41 3.80 -27.88 -0.11 -1.52 16 8 C 0.51 7.67 7.70 -10.99 -0.08 7.58 16 9 O -0.54 -10.47 15.40 5.55 0.09 -10.39 16 10 N -0.61 -9.01 2.97 -172.79 -0.51 -9.53 16 11 C 0.11 1.22 6.34 -3.71 -0.02 1.19 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 13 C -0.14 -2.35 5.47 -26.69 -0.15 -2.49 16 14 C 0.17 3.40 2.92 -67.84 -0.20 3.21 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.21 5.12 -53.34 -0.27 -18.49 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.11 1.92 5.90 -3.73 -0.02 1.90 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.34 6.56 -51.93 -0.34 0.00 16 33 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 37 H 0.09 0.76 6.36 -51.93 -0.33 0.43 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.90 7.01 -51.93 -0.36 1.54 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -32.00 363.81 -8.91 -40.91 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.62 Total: 5.76 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.77 Total: -3.72 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.06 Total: -55.58 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.00 -8.91 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210264040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.994 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds