Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 H 1.09001 * 109.47122 * 304.99942 * 3 2 1 5 5 C 1.52997 * 109.46941 * 65.00202 * 3 2 1 6 6 C 1.52997 * 109.46792 * 185.00216 * 3 2 1 7 7 C 1.53004 * 109.46925 * 175.00224 * 6 3 2 8 8 C 1.50702 * 109.47122 * 179.97438 * 7 6 3 9 9 O 1.21290 * 119.99900 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00002 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64881 * 179.97438 * 10 8 7 12 12 C 1.54900 * 104.83449 * 204.16728 * 11 10 8 13 13 H 1.09011 * 111.00318 * 81.06450 * 12 11 10 14 14 C 1.52996 * 111.00779 * 204.91826 * 12 11 10 15 15 C 1.55161 * 101.58443 * 322.99535 * 12 11 10 16 16 H 1.09001 * 110.86964 * 277.07237 * 15 12 11 17 17 N 1.46499 * 110.72445 * 153.86349 * 15 12 11 18 18 C 1.36935 * 119.99938 * 160.02467 * 17 15 12 19 19 H 1.07999 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99632 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99535 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 0.27829 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47017 * 125.64596 * 0.03003 * 10 8 7 27 27 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46651 * 300.00166 * 1 2 3 29 29 H 1.09002 * 109.46828 * 59.99868 * 1 2 3 30 30 H 1.09007 * 109.47044 * 240.00143 * 2 1 3 31 31 H 1.08994 * 109.47359 * 120.00498 * 2 1 3 32 32 H 1.08998 * 109.46852 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47149 * 299.99651 * 5 3 2 34 34 H 1.09001 * 109.47425 * 59.99925 * 5 3 2 35 35 H 1.09001 * 109.47736 * 54.99943 * 6 3 2 36 36 H 1.09000 * 109.47437 * 294.99730 * 6 3 2 37 37 H 1.08996 * 109.47324 * 60.00057 * 7 6 3 38 38 H 1.09001 * 109.47028 * 299.99592 * 7 6 3 39 39 H 1.09005 * 110.36611 * 323.01235 * 11 10 8 40 40 H 1.09004 * 110.36164 * 85.22009 * 11 10 8 41 41 H 1.08998 * 109.47394 * 172.19820 * 14 12 11 42 42 H 1.08996 * 109.46838 * 292.19667 * 14 12 11 43 43 H 1.09000 * 109.46980 * 52.19595 * 14 12 11 44 44 H 0.97004 * 119.99469 * 340.02536 * 17 15 12 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88548 * 59.48977 * 26 10 8 47 47 H 1.08995 * 110.01292 * 298.38677 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 6 4.0645 2.8850 -0.2511 8 6 5.5665 2.8868 -0.3744 9 8 6.1771 1.8389 -0.3636 10 7 6.2311 4.0528 -0.4977 11 6 7.6925 4.1995 -0.6256 12 6 7.9932 5.6320 -0.1189 13 1 8.0324 5.6611 0.9701 14 6 9.2911 6.1676 -0.7267 15 6 6.7646 6.4154 -0.6522 16 1 6.9103 6.7045 -1.6930 17 7 6.4999 7.5926 0.1787 18 6 5.7525 8.6270 -0.3178 19 1 5.3578 8.5748 -1.3217 20 6 5.5013 9.7422 0.4697 21 7 4.7833 10.7367 -0.0078 22 14 6.1893 9.8353 2.2038 23 1 5.2086 9.2567 3.1571 24 1 7.4594 9.0691 2.2742 25 1 6.4468 11.2541 2.5588 26 6 5.6189 5.3892 -0.5257 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9990 3.1540 1.3075 33 1 0.5490 2.1252 1.3969 34 1 2.0699 1.5875 2.1492 35 1 3.8571 0.8800 -1.0114 36 1 4.0030 0.9836 0.7596 37 1 3.7724 3.4493 0.6345 38 1 3.6264 3.3458 -1.1365 39 1 8.2034 3.4627 -0.0057 40 1 7.9946 4.0926 -1.6675 41 1 9.4074 7.2196 -0.4660 42 1 10.1362 5.6010 -0.3359 43 1 9.2544 6.0639 -1.8111 44 1 6.8542 7.6393 1.0805 45 1 4.6080 11.5162 0.5424 46 1 5.0658 5.5630 0.3973 47 1 4.9488 5.4746 -1.3811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216041341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = -52.733470 kcal Electronic energy + Delta-G solvation = -22740.925319 eV Core-core repulsion = 19536.804509 eV Total energy + Delta-G solvation = -3204.120810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95622 -38.00289 -36.98883 -34.20945 -32.79024 -32.10566 -31.07456 -28.98687 -27.91699 -26.78058 -25.35190 -23.84696 -22.49920 -21.23596 -20.21638 -19.98335 -18.85945 -17.60496 -16.84375 -16.17172 -15.69918 -15.21754 -15.01886 -14.47487 -14.08716 -13.84712 -13.74256 -13.33543 -13.22834 -13.15976 -12.76882 -12.61997 -12.37907 -12.27979 -12.05379 -11.79404 -11.76406 -11.72351 -11.47883 -11.14980 -11.04872 -10.84588 -10.69131 -10.68077 -10.63311 -10.52438 -10.37423 -10.06544 -9.71059 -9.62937 -9.06385 -8.38138 -7.44135 -5.88459 -3.26511 2.82783 3.19976 3.29905 3.32799 3.38987 4.48100 4.49696 4.64593 4.73046 4.79208 4.99434 5.02870 5.05492 5.10905 5.23515 5.30396 5.40318 5.42179 5.44274 5.47569 5.59399 5.64536 5.67286 5.69699 5.74811 5.79238 5.84124 5.86650 5.90028 5.95847 5.99098 6.06929 6.09893 6.11462 6.27489 6.30827 6.34079 6.34410 6.44303 6.51029 6.72873 7.75809 7.86108 8.30255 8.35860 9.06743 9.79080 9.97358 11.29148 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.004027 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.450804 B = 6950.543761 C = 8291.860404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.138 4.138 8 C 0.525 3.475 9 O -0.557 6.557 10 N -0.616 5.616 11 C 0.114 3.886 12 C -0.117 4.117 13 H 0.081 0.919 14 C -0.135 4.135 15 C 0.182 3.818 16 H 0.074 0.926 17 N -0.736 5.736 18 C -0.253 4.253 19 H 0.092 0.908 20 C 0.010 3.990 21 N -0.929 5.929 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.290 1.290 26 C 0.074 3.926 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 -17.377 -0.006 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.210 4.210 6 C -0.135 4.135 7 C -0.177 4.177 8 C 0.315 3.685 9 O -0.436 6.436 10 N -0.350 5.350 11 C -0.009 4.009 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.193 4.193 15 C 0.071 3.929 16 H 0.092 0.908 17 N -0.378 5.378 18 C -0.382 4.382 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.216 1.216 26 C -0.052 4.052 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.813 -17.790 -0.140 17.883 hybrid contribution 0.295 0.374 1.285 1.371 sum -1.518 -17.415 1.145 17.519 Atomic orbital electron populations 1.21830 0.96024 1.01324 1.01945 1.21560 0.95704 0.96404 1.01993 1.21207 0.95265 0.96159 0.98611 0.91085 1.21958 1.01212 1.00777 0.97035 1.21384 0.94121 0.94836 1.03134 1.21713 0.91750 0.99780 1.04504 1.20441 0.90083 0.82140 0.75845 1.90658 1.70206 1.30947 1.51774 1.48595 1.07985 1.06641 1.71730 1.22226 0.80987 0.96899 1.00816 1.22655 0.96456 0.93758 1.00823 0.90104 1.21624 0.95384 1.01714 1.00536 1.21217 0.89765 0.85960 0.96003 0.90770 1.42712 1.63464 1.17188 1.14443 1.19059 1.24535 0.94499 1.00141 0.88988 1.24675 0.99643 0.96385 0.97921 1.69700 1.42848 1.08180 1.36819 0.86589 0.79006 0.77106 0.86050 1.21002 1.20210 1.21622 1.23224 0.98848 0.81127 1.01996 0.93060 0.92484 0.92788 0.92051 0.92052 0.92275 0.92558 0.92771 0.91399 0.91379 0.88738 0.89002 0.91004 0.91577 0.91470 0.93051 0.92496 0.80257 0.92890 0.90891 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -1.02 5.40 -26.73 -0.14 -1.16 16 3 C -0.09 -0.88 2.39 -90.62 -0.22 -1.10 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -1.42 8.70 37.16 0.32 -1.09 16 6 C -0.10 -1.09 3.97 -26.73 -0.11 -1.20 16 7 C -0.14 -1.69 4.65 -27.88 -0.13 -1.82 16 8 C 0.53 8.18 7.85 -10.98 -0.09 8.09 16 9 O -0.56 -10.20 16.24 5.55 0.09 -10.11 16 10 N -0.62 -9.44 3.33 -170.52 -0.57 -10.01 16 11 C 0.11 1.62 6.37 -2.53 -0.02 1.61 16 12 C -0.12 -1.71 3.25 -88.48 -0.29 -2.00 16 13 H 0.08 1.22 8.00 -51.92 -0.42 0.81 16 14 C -0.13 -1.76 9.31 37.16 0.35 -1.41 16 15 C 0.18 3.17 3.06 -66.09 -0.20 2.97 16 16 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 17 N -0.74 -15.89 4.98 -51.65 -0.26 -16.15 16 18 C -0.25 -6.61 10.46 -15.06 -0.16 -6.76 16 19 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -27.88 13.97 55.49 0.78 -27.11 16 22 Si 0.88 21.01 27.74 -169.99 -4.71 16.30 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.07 1.19 6.24 -3.06 -0.02 1.17 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.09 1.12 6.56 -51.93 -0.34 0.77 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 40 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.36 7.83 5.57 -40.82 -0.23 7.60 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -30.19 367.77 -8.32 -38.50 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.75 Total: 6.37 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.43 Total: -3.35 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.05 Total: -53.26 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.19 -8.32 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216041341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.231 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds