Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.53006 * 109.47127 * 295.00521 * 3 2 1 6 6 C 1.52997 * 109.47232 * 175.00399 * 3 2 1 7 7 H 1.09000 * 109.47278 * 304.99661 * 6 3 2 8 8 N 1.46901 * 109.47351 * 65.00216 * 6 3 2 9 9 C 1.53011 * 109.47134 * 184.99986 * 6 3 2 10 10 C 1.50701 * 109.47018 * 174.99830 * 9 6 3 11 11 O 1.21279 * 119.99735 * 0.02562 * 10 9 6 12 12 N 1.34772 * 119.99539 * 179.97438 * 10 9 6 13 13 C 1.46506 * 119.99761 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.41088 * 324.85984 * 13 12 10 15 15 C 1.52961 * 109.41267 * 84.64608 * 13 12 10 16 16 C 1.53224 * 109.40480 * 183.70372 * 15 13 12 17 17 C 1.51269 * 108.53888 * 305.37571 * 16 15 13 18 18 C 1.37877 * 120.85016 * 231.32536 * 17 16 15 19 19 N 1.31515 * 120.00140 * 180.02562 * 18 17 16 20 20 Si 1.86806 * 119.99851 * 0.02562 * 18 17 16 21 21 H 1.48498 * 109.47317 * 89.99971 * 20 18 17 22 22 H 1.48503 * 109.46901 * 210.00015 * 20 18 17 23 23 H 1.48499 * 109.47299 * 329.99655 * 20 18 17 24 24 C 1.51262 * 118.29843 * 51.34507 * 17 16 15 25 25 C 1.52958 * 109.41668 * 205.00162 * 13 12 10 26 26 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 27 27 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 29 29 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 30 30 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 32 32 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 33 33 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 34 34 H 1.00892 * 111.00117 * 59.99992 * 8 6 3 35 35 H 1.00899 * 110.99732 * 183.95280 * 8 6 3 36 36 H 1.09001 * 109.47176 * 294.99965 * 9 6 3 37 37 H 1.09003 * 109.46918 * 54.99699 * 9 6 3 38 38 H 0.96994 * 120.00701 * 0.02562 * 12 10 9 39 39 H 1.08995 * 109.48167 * 303.68643 * 15 13 12 40 40 H 1.09005 * 109.48014 * 63.72332 * 15 13 12 41 41 H 1.09004 * 109.62686 * 185.66044 * 16 15 13 42 42 H 1.08999 * 109.78374 * 65.18265 * 16 15 13 43 43 H 0.97000 * 120.00026 * 180.02562 * 19 18 17 44 44 H 1.09003 * 109.62838 * 188.93881 * 24 17 16 45 45 H 1.09000 * 109.78391 * 68.46176 * 24 17 16 46 46 H 1.08997 * 109.47948 * 296.27799 * 25 13 12 47 47 H 1.09007 * 109.48110 * 56.31468 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1256 7 1 3.8571 0.8800 1.0112 8 7 4.1553 0.8234 -1.0676 9 6 4.0646 2.8850 0.2510 10 6 5.5513 2.8813 0.4977 11 8 6.1520 1.8300 0.5659 12 7 6.2133 4.0464 0.6414 13 6 7.6585 4.0429 0.8817 14 1 7.9207 3.1849 1.5008 15 6 8.3960 3.9479 -0.4550 16 6 9.9035 3.8510 -0.1989 17 6 10.3215 5.0227 0.6617 18 6 11.3772 5.8295 0.2934 19 7 11.7266 6.8435 1.0544 20 14 12.3110 5.4822 -1.2868 21 1 11.6781 6.2212 -2.4086 22 1 13.7208 5.9240 -1.1359 23 1 12.2768 4.0252 -1.5721 24 6 9.5519 5.2863 1.9370 25 6 8.0571 5.3312 1.6035 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0698 1.5876 -2.1492 32 1 0.5489 2.1253 -1.3968 33 1 1.9982 3.1544 -1.3071 34 1 3.8989 1.3285 -1.9025 35 1 5.1581 0.7541 -0.9805 36 1 3.8506 3.4254 -0.6711 37 1 3.5592 3.3736 1.0841 38 1 5.7329 4.8873 0.5864 39 1 8.0608 3.0611 -0.9928 40 1 8.1847 4.8360 -1.0506 41 1 10.4390 3.8843 -1.1478 42 1 10.1309 2.9182 0.3172 43 1 12.4691 7.4113 0.7951 44 1 9.8613 6.2419 2.3605 45 1 9.7430 4.4887 2.6548 46 1 7.8539 6.1866 0.9592 47 1 7.4817 5.4248 2.5246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -80.568457 kcal Electronic energy + Delta-G solvation = -22960.845443 eV Core-core repulsion = 19755.517617 eV Total energy + Delta-G solvation = -3205.327826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93890 -38.00483 -36.64941 -33.77001 -33.39753 -31.68398 -29.76316 -29.56549 -29.04467 -27.04334 -25.65474 -22.81090 -21.77115 -21.46466 -19.97149 -19.53738 -19.30737 -17.26698 -16.31942 -15.87411 -15.69193 -15.26834 -14.96649 -14.45681 -14.07994 -13.86256 -13.72273 -13.37352 -13.16699 -12.91710 -12.80374 -12.44374 -12.24264 -12.14086 -12.05474 -11.81116 -11.64125 -11.24791 -11.05885 -10.85551 -10.79038 -10.75160 -10.70013 -10.58379 -10.19414 -10.02180 -9.73411 -9.54120 -9.03378 -8.91279 -8.60738 -8.49933 -8.35411 -6.13817 -4.04537 2.85709 3.24405 3.33916 3.36624 3.50078 4.35949 4.50958 4.61413 4.69234 4.86608 4.95651 5.10452 5.14288 5.22374 5.27059 5.37639 5.38750 5.45330 5.63922 5.70040 5.74360 5.84476 5.88383 5.91840 5.93244 5.96840 6.15546 6.27614 6.33854 6.43145 6.43895 6.66782 6.72798 6.84655 6.92099 7.05832 7.19321 7.25551 7.40380 7.57585 7.61250 7.67825 7.73039 7.89148 8.34547 8.51768 8.92659 9.51339 10.95743 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039066 B = 0.003155 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.565115 B = 8873.837166 C = 9173.910067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.084 4.084 4 H 0.069 0.931 5 C -0.154 4.154 6 C 0.114 3.886 7 H 0.086 0.914 8 N -0.841 5.841 9 C -0.182 4.182 10 C 0.505 3.495 11 O -0.545 6.545 12 N -0.724 5.724 13 C 0.153 3.847 14 H 0.077 0.923 15 C -0.112 4.112 16 C -0.013 4.013 17 C -0.489 4.489 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.013 3.987 25 C -0.114 4.114 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.330 0.670 35 H 0.356 0.644 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.393 0.607 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.264 0.736 44 H 0.060 0.940 45 H 0.006 0.994 46 H 0.053 0.947 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.902 -6.307 -3.005 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.211 4.211 6 C 0.002 3.998 7 H 0.104 0.896 8 N -0.374 5.374 9 C -0.224 4.224 10 C 0.291 3.709 11 O -0.423 6.423 12 N -0.373 5.373 13 C 0.050 3.950 14 H 0.096 0.904 15 C -0.151 4.151 16 C -0.051 4.051 17 C -0.508 4.508 18 C -0.127 4.127 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.025 4.025 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.226 0.774 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.024 0.976 46 H 0.072 0.928 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.732 -7.552 -2.728 21.303 hybrid contribution 0.784 1.491 -0.983 1.951 sum -18.948 -6.061 -3.711 20.237 Atomic orbital electron populations 1.21862 0.96631 1.01257 1.01458 1.21438 0.94560 0.95966 1.02838 1.21206 0.94107 0.96855 0.98119 0.91309 1.21945 1.01290 0.99989 0.97867 1.21204 0.93188 0.90221 0.95226 0.89605 1.58971 1.18093 1.56935 1.03450 1.22696 0.93644 1.02044 1.04066 1.20639 0.89372 0.84262 0.76581 1.90654 1.69780 1.30975 1.50851 1.46481 1.10567 1.07929 1.72292 1.21057 0.76531 0.99912 0.97482 0.90439 1.21886 0.98593 0.99081 0.95496 1.19711 0.91273 0.97404 0.96759 1.20038 1.14125 1.10620 1.06029 1.24844 0.96421 0.94535 0.96877 1.69832 1.28270 1.16867 1.37814 0.86655 0.79028 0.78910 0.83764 1.20465 1.21598 1.19140 1.19333 0.88644 0.98804 0.95740 1.21925 1.00837 0.95108 0.97368 0.92745 0.93087 0.93179 0.90811 0.92345 0.91961 0.92556 0.92990 0.85694 0.82655 0.89206 0.88942 0.77373 0.94593 0.93184 0.95109 0.96237 0.92570 0.92098 0.97573 0.92783 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -0.97 5.23 -26.73 -0.14 -1.11 16 3 C -0.08 -0.71 2.21 -90.62 -0.20 -0.91 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.15 -1.15 8.24 37.16 0.31 -0.85 16 6 C 0.11 1.22 2.19 -67.71 -0.15 1.07 16 7 H 0.09 1.09 7.96 -51.93 -0.41 0.68 16 8 N -0.84 -9.63 8.61 -4.66 -0.04 -9.67 16 9 C -0.18 -1.88 4.98 -27.88 -0.14 -2.01 16 10 C 0.51 7.45 7.60 -10.99 -0.08 7.37 16 11 O -0.54 -10.01 13.81 5.56 0.08 -9.93 16 12 N -0.72 -10.89 5.07 -53.84 -0.27 -11.16 16 13 C 0.15 2.93 2.35 -67.97 -0.16 2.77 16 14 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 15 C -0.11 -2.31 5.50 -26.64 -0.15 -2.46 16 16 C -0.01 -0.32 5.59 -27.49 -0.15 -0.47 16 17 C -0.49 -12.77 5.51 -98.93 -0.55 -13.32 16 18 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 19 N -0.89 -25.30 12.73 55.43 0.71 -24.60 16 20 Si 0.89 21.10 27.27 -169.99 -4.64 16.46 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.21 6.46 56.52 0.37 -5.84 16 24 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 25 C -0.11 -2.29 5.40 -26.64 -0.14 -2.43 16 26 H 0.05 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 6.61 -51.93 -0.34 0.15 16 32 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 33 H 0.05 0.37 6.68 -51.93 -0.35 0.02 16 34 H 0.33 3.31 7.04 -39.30 -0.28 3.03 16 35 H 0.36 4.95 6.88 -39.29 -0.27 4.68 16 36 H 0.09 0.80 6.81 -51.93 -0.35 0.44 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 4.83 8.60 -40.82 -0.35 4.48 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 45 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -28.75 352.98 -8.58 -37.33 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.28 Total: 7.27 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.46 Total: -11.03 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.39 Total: -45.43 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.64 Total: 16.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.75 -8.58 -37.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds