Wall clock time and date at job start Tue Mar 31 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47535 * 2 1 4 4 H 1.09009 * 109.47458 * 305.00339 * 3 2 1 5 5 C 1.50701 * 109.47448 * 185.00302 * 3 2 1 6 6 H 1.08005 * 119.99705 * 239.99834 * 5 3 2 7 7 C 1.37877 * 119.99760 * 60.00107 * 5 3 2 8 8 N 1.31503 * 120.00371 * 0.02562 * 7 5 3 9 9 Si 1.86810 * 119.99591 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47112 * 89.99915 * 9 7 5 11 11 H 1.48501 * 109.46872 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.46779 * 329.99652 * 9 7 5 13 13 N 1.46504 * 109.47162 * 64.99768 * 3 2 1 14 14 C 1.34771 * 120.00271 * 274.73033 * 13 3 2 15 15 O 1.21279 * 120.00028 * 355.22439 * 14 13 3 16 16 C 1.50700 * 119.99861 * 175.22589 * 14 13 3 17 17 C 1.52999 * 109.50550 * 72.57712 * 16 14 13 18 18 C 1.53003 * 109.47021 * 299.99957 * 17 16 14 19 19 C 1.53000 * 109.47070 * 59.99871 * 17 16 14 20 20 C 1.53118 * 109.50174 * 192.65612 * 16 14 13 21 21 C 1.53201 * 109.12015 * 62.32238 * 20 16 14 22 22 C 1.53042 * 109.29696 * 57.62915 * 21 20 16 23 23 N 1.46842 * 109.52257 * 300.82153 * 22 21 20 24 24 C 1.46853 * 111.19814 * 61.74385 * 23 22 21 25 25 H 1.09005 * 109.46893 * 299.99995 * 1 2 3 26 26 H 1.09000 * 109.47220 * 59.99637 * 1 2 3 27 27 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46893 * 240.00005 * 2 1 3 29 29 H 1.09000 * 109.47220 * 120.00362 * 2 1 3 30 30 H 0.97005 * 120.00175 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99401 * 95.00249 * 13 3 2 32 32 H 1.08998 * 109.47072 * 179.97438 * 17 16 14 33 33 H 1.08998 * 109.47410 * 59.99947 * 18 17 16 34 34 H 1.08994 * 109.46877 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.46869 * 299.99721 * 18 17 16 36 36 H 1.08993 * 109.47420 * 60.00466 * 19 17 16 37 37 H 1.09008 * 109.46702 * 180.02562 * 19 17 16 38 38 H 1.08998 * 109.47031 * 299.99851 * 19 17 16 39 39 H 1.09004 * 109.52496 * 182.19225 * 20 16 14 40 40 H 1.09003 * 109.52142 * 302.37783 * 20 16 14 41 41 H 1.09008 * 109.49019 * 297.68184 * 21 20 16 42 42 H 1.08996 * 109.49395 * 177.57661 * 21 20 16 43 43 H 1.09006 * 109.45770 * 180.80547 * 22 21 20 44 44 H 1.08996 * 109.45060 * 60.83793 * 22 21 20 45 45 H 1.00902 * 111.00132 * 185.83711 * 23 22 21 46 46 H 1.09004 * 109.45944 * 178.23973 * 24 23 22 47 47 H 1.08993 * 109.46146 * 58.27027 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1432 0.8783 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0050 0.8799 -1.3813 10 1 6.5538 -0.3521 -0.7601 11 1 6.3835 0.9213 -2.8167 12 1 6.5575 2.0719 -0.6891 13 7 1.6525 2.0975 1.2518 14 6 0.4373 2.6692 1.3651 15 8 -0.3018 2.7180 0.4048 16 6 -0.0030 3.2479 2.6851 17 6 0.7636 4.5441 2.9557 18 6 2.2640 4.2486 3.0040 19 6 0.4773 5.5488 1.8379 20 6 -1.5049 3.5424 2.6385 21 6 -2.2672 2.2305 2.4271 22 6 -1.9173 1.2551 3.5533 23 7 -0.4702 1.0061 3.5549 24 6 0.2812 2.2431 3.8038 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8292 -0.0610 -2.9501 31 1 2.2720 2.1231 1.9978 32 1 0.4444 4.9624 3.9103 33 1 2.5829 3.8305 2.0493 34 1 2.8101 5.1718 3.1973 35 1 2.4679 3.5328 3.8004 36 1 -0.5915 5.7594 1.8035 37 1 1.0239 6.4721 2.0306 38 1 0.7963 5.1307 0.8832 39 1 -1.8163 3.9970 3.5791 40 1 -1.7169 4.2248 1.8154 41 1 -1.9843 1.7960 1.4683 42 1 -3.3392 2.4273 2.4360 43 1 -2.4474 0.3154 3.3976 44 1 -2.2131 1.6846 4.5104 45 1 -0.2265 0.2938 4.2267 46 1 1.3480 2.0209 3.8300 47 1 -0.0248 2.6678 4.7598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:35 Heat of formation + Delta-G solvation = -52.677014 kcal Electronic energy + Delta-G solvation = -25234.339884 eV Core-core repulsion = 22030.221522 eV Total energy + Delta-G solvation = -3204.118362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54833 -37.19244 -35.27783 -34.87902 -32.41080 -31.47351 -30.57907 -29.55833 -27.20264 -26.75069 -23.90503 -23.19597 -22.96162 -21.32543 -20.14878 -19.37720 -18.71305 -16.87589 -16.21361 -15.42340 -15.19605 -14.89478 -14.39073 -14.13996 -13.85291 -13.71640 -13.59048 -13.34837 -13.01810 -12.63600 -12.46991 -12.16003 -12.01498 -11.85540 -11.47223 -11.35043 -11.20891 -11.13064 -10.96150 -10.90392 -10.77346 -10.61173 -10.49868 -10.19651 -10.01532 -9.92893 -9.91848 -9.43571 -8.89896 -8.67313 -8.36938 -8.20817 -7.54240 -6.03199 -4.11930 3.28229 3.35256 3.37042 3.68051 4.19319 4.34355 4.50397 4.73690 4.93960 5.05024 5.21943 5.25801 5.27748 5.36751 5.49906 5.52345 5.64193 5.68715 5.76383 5.84785 5.94107 5.94771 6.01387 6.10247 6.12672 6.23859 6.25885 6.40418 6.55255 6.58393 6.60025 6.67438 6.76343 6.91126 7.13459 7.30864 7.40244 7.49232 7.57500 7.69825 7.75577 7.91041 8.05563 8.33405 8.87039 8.94408 9.38603 9.57551 11.01746 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.006316 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.358945 B = 4431.837340 C = 5048.708380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.271 3.729 4 H 0.046 0.954 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.705 5.705 14 C 0.539 3.461 15 O -0.554 6.554 16 C -0.076 4.076 17 C -0.079 4.079 18 C -0.173 4.173 19 C -0.150 4.150 20 C -0.093 4.093 21 C -0.128 4.128 22 C 0.061 3.939 23 N -0.681 5.681 24 C 0.070 3.930 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.016 0.984 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.385 0.615 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.022 0.978 45 H 0.342 0.658 46 H 0.079 0.921 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 5.118 13.496 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.354 5.354 14 C 0.324 3.676 15 O -0.433 6.433 16 C -0.080 4.080 17 C -0.098 4.098 18 C -0.231 4.231 19 C -0.207 4.207 20 C -0.131 4.131 21 C -0.165 4.165 22 C -0.068 4.068 23 N -0.312 5.312 24 C -0.059 4.059 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.160 0.840 46 H 0.097 0.903 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.311 5.058 11.920 14.870 hybrid contribution 1.180 -0.005 1.286 1.745 sum -6.131 5.053 13.205 15.411 Atomic orbital electron populations 1.21897 0.98394 0.97935 1.01837 1.21829 0.92770 0.99695 1.01669 1.18696 0.93699 0.89231 0.81440 0.93593 1.21260 0.91071 1.38646 1.05978 0.92397 1.24862 0.98228 0.95014 0.95507 1.69906 1.34882 1.37790 1.09333 0.86535 0.85422 0.78347 0.77294 1.20655 1.21179 1.19951 1.46632 1.14906 1.55717 1.18116 1.19611 0.82061 0.77585 0.88324 1.90603 1.53795 1.59271 1.39639 1.21010 0.96856 0.95041 0.95078 1.21027 0.95520 0.94019 0.99233 1.22308 0.95075 1.01899 1.03784 1.21895 1.01454 0.98233 0.99113 1.21424 0.92471 0.98011 1.01202 1.21757 0.98687 0.95258 1.00819 1.21923 0.88495 0.99382 0.97013 1.60116 1.05561 1.09320 1.56177 1.21982 0.98701 0.90008 0.95238 0.91957 0.94020 0.96502 0.88999 0.95262 0.92744 0.78061 0.91114 0.89943 0.92501 0.92527 0.92449 0.92892 0.91747 0.92771 0.90622 0.88777 0.92295 0.91166 0.96013 0.84023 0.90251 0.95069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.59 37.15 0.32 -2.97 16 2 C -0.12 -3.00 5.45 -26.74 -0.15 -3.14 16 3 C 0.27 6.85 2.24 -69.08 -0.16 6.69 16 4 H 0.05 1.36 7.51 -51.92 -0.39 0.97 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.02 11.29 55.43 0.63 -24.39 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.70 -14.48 3.63 -54.93 -0.20 -14.68 16 14 C 0.54 10.37 2.48 -10.99 -0.03 10.34 16 15 O -0.55 -12.61 11.97 5.56 0.07 -12.54 16 16 C -0.08 -1.11 0.28 -155.58 -0.04 -1.16 16 17 C -0.08 -1.02 2.28 -90.62 -0.21 -1.23 16 18 C -0.17 -2.27 7.68 37.16 0.29 -1.98 16 19 C -0.15 -2.07 8.60 37.16 0.32 -1.75 16 20 C -0.09 -1.31 4.00 -26.57 -0.11 -1.41 16 21 C -0.13 -1.83 5.79 -26.61 -0.15 -1.98 16 22 C 0.06 0.76 6.55 -3.83 -0.03 0.74 16 23 N -0.68 -9.11 6.29 -113.82 -0.72 -9.83 16 24 C 0.07 0.91 4.69 -3.83 -0.02 0.89 16 25 H 0.06 1.36 4.70 -51.93 -0.24 1.12 16 26 H 0.04 1.02 7.92 -51.93 -0.41 0.61 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 2.54 5.95 -51.93 -0.31 2.23 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.38 7.20 5.18 -40.82 -0.21 6.99 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.33 5.39 -51.93 -0.28 1.05 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 6.45 -51.93 -0.34 0.32 16 36 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 37 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 1.10 7.22 -51.93 -0.37 0.72 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.15 6.32 -51.93 -0.33 0.82 16 41 H 0.09 1.71 5.31 -51.92 -0.28 1.44 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.34 3.88 8.90 -39.29 -0.35 3.53 16 46 H 0.08 1.02 5.42 -51.93 -0.28 0.74 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -29.50 336.92 -8.42 -37.91 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.90 Total: 12.31 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.35 Total: -9.63 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.29 Total: -48.90 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.50 -8.42 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds