Wall clock time and date at job start Tue Mar 31 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47258 * 2 1 4 4 H 1.09000 * 109.47619 * 305.00366 * 3 2 1 5 5 C 1.50696 * 109.47346 * 184.99867 * 3 2 1 6 6 H 1.07996 * 120.00099 * 240.00266 * 5 3 2 7 7 C 1.37873 * 120.00009 * 60.00210 * 5 3 2 8 8 N 1.31517 * 119.99771 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46735 * 90.00154 * 9 7 5 11 11 H 1.48500 * 109.47176 * 210.00179 * 9 7 5 12 12 H 1.48496 * 109.46968 * 329.99994 * 9 7 5 13 13 N 1.46505 * 109.46860 * 64.99966 * 3 2 1 14 14 C 1.34772 * 120.00096 * 274.99965 * 13 3 2 15 15 O 1.21281 * 120.00263 * 355.84868 * 14 13 3 16 16 C 1.50704 * 120.00091 * 175.84321 * 14 13 3 17 17 C 1.53004 * 109.50135 * 67.15182 * 16 14 13 18 18 C 1.53007 * 109.46714 * 60.00231 * 17 16 14 19 19 C 1.53002 * 109.47064 * 179.97438 * 17 16 14 20 20 C 1.53122 * 109.50341 * 307.07779 * 16 14 13 21 21 C 1.53115 * 109.15985 * 297.71173 * 20 16 14 22 22 C 1.53037 * 109.27777 * 302.34656 * 21 20 16 23 23 N 1.46845 * 109.52655 * 59.18178 * 22 21 20 24 24 C 1.46854 * 111.19480 * 298.25667 * 23 22 21 25 25 H 1.08997 * 109.46984 * 60.00284 * 1 2 3 26 26 H 1.08999 * 109.46859 * 299.99761 * 1 2 3 27 27 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46853 * 120.00469 * 2 1 3 29 29 H 1.08999 * 109.46859 * 240.00239 * 2 1 3 30 30 H 0.97010 * 119.99880 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00078 * 94.99934 * 13 3 2 32 32 H 1.08992 * 109.47227 * 300.00388 * 17 16 14 33 33 H 1.09001 * 109.46989 * 60.00093 * 18 17 16 34 34 H 1.09001 * 109.46530 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47019 * 300.00097 * 18 17 16 36 36 H 1.09007 * 109.47044 * 60.00204 * 19 17 16 37 37 H 1.08994 * 109.46993 * 180.02562 * 19 17 16 38 38 H 1.09002 * 109.47049 * 300.00605 * 19 17 16 39 39 H 1.09001 * 109.51980 * 57.61390 * 20 16 14 40 40 H 1.08999 * 109.52410 * 177.80703 * 20 16 14 41 41 H 1.08996 * 109.50592 * 62.28740 * 21 20 16 42 42 H 1.09005 * 109.50363 * 182.36468 * 21 20 16 43 43 H 1.09001 * 109.46319 * 179.19808 * 22 21 20 44 44 H 1.08999 * 109.46236 * 299.16147 * 22 21 20 45 45 H 1.00892 * 111.00123 * 174.16391 * 23 22 21 46 46 H 1.09000 * 109.46430 * 301.72594 * 24 23 22 47 47 H 1.09001 * 109.46326 * 181.75682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8813 -1.3818 10 1 6.5549 -0.3502 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0738 -0.6901 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3106 2.6988 0.4112 16 6 0.0007 3.2552 2.6835 17 6 0.8567 4.4834 2.9995 18 6 0.6836 5.5244 1.8916 19 6 0.4146 5.0831 4.3358 20 6 0.1719 2.2137 3.7928 21 6 -0.7325 1.0136 3.4993 22 6 -2.1832 1.4888 3.3905 23 7 -2.2947 2.4830 2.3155 24 6 -1.4712 3.6655 2.5985 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0610 -2.9500 31 1 2.2719 2.1230 1.9979 32 1 1.9045 4.1897 3.0615 33 1 -0.3643 5.8181 1.8296 34 1 1.2931 6.3995 2.1169 35 1 0.9982 5.0974 0.9394 36 1 0.5376 4.3416 5.1253 37 1 1.0241 5.9583 4.5606 38 1 -0.6333 5.3768 4.2733 39 1 1.2111 1.8866 3.8280 40 1 -0.1054 2.6531 4.7510 41 1 -0.4298 0.5509 2.5600 42 1 -0.6466 0.2869 4.3072 43 1 -2.8281 0.6388 3.1674 44 1 -2.4896 1.9390 4.3348 45 1 -3.2575 2.7416 2.1607 46 1 -1.7810 4.1055 3.5464 47 1 -1.5989 4.3965 1.8000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:38 Heat of formation + Delta-G solvation = -54.775495 kcal Electronic energy + Delta-G solvation = -25013.160305 eV Core-core repulsion = 21808.950946 eV Total energy + Delta-G solvation = -3204.209359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45892 -37.28305 -35.26022 -34.76256 -32.41416 -31.57495 -30.71189 -29.28169 -27.33305 -26.75097 -24.06506 -23.61816 -22.88149 -20.92263 -20.42209 -19.40771 -18.33612 -16.76036 -16.40632 -15.54015 -15.21503 -14.91137 -14.54112 -14.14818 -14.08234 -13.73018 -13.32783 -13.25173 -12.88185 -12.62180 -12.54063 -12.44757 -12.06302 -11.85475 -11.67476 -11.38099 -11.21967 -11.12498 -11.03346 -10.92195 -10.77679 -10.69289 -10.60535 -10.22059 -10.04030 -10.01504 -9.91952 -9.41802 -8.92271 -8.57094 -8.37846 -8.06543 -7.57226 -6.04466 -4.13151 3.27693 3.34722 3.36759 3.72582 4.20817 4.38549 4.49743 4.70301 4.94469 5.02753 5.10385 5.23269 5.26469 5.32865 5.41145 5.53351 5.61318 5.66202 5.69611 5.74402 5.88002 5.93697 5.98954 6.01772 6.08086 6.16943 6.20213 6.32048 6.40385 6.42830 6.51921 6.54121 6.68993 6.85477 7.21973 7.27677 7.36842 7.54428 7.59853 7.68008 7.73474 7.89348 8.04022 8.30484 8.86253 8.95011 9.41173 9.57900 11.00602 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.005933 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.774547 B = 4717.924433 C = 5387.075736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.274 3.726 4 H 0.047 0.953 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.716 5.716 14 C 0.524 3.476 15 O -0.527 6.527 16 C -0.073 4.073 17 C -0.083 4.083 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.109 4.109 21 C -0.131 4.131 22 C 0.061 3.939 23 N -0.672 5.672 24 C 0.086 3.914 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.017 0.983 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.382 0.618 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.021 0.979 45 H 0.339 0.661 46 H 0.028 0.972 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 5.746 13.714 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.365 5.365 14 C 0.308 3.692 15 O -0.403 6.403 16 C -0.077 4.077 17 C -0.103 4.103 18 C -0.207 4.207 19 C -0.205 4.205 20 C -0.147 4.147 21 C -0.169 4.169 22 C -0.068 4.068 23 N -0.302 5.302 24 C -0.043 4.043 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.214 0.786 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.156 0.844 46 H 0.046 0.954 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.850 5.351 12.406 15.626 hybrid contribution 0.863 0.281 0.981 1.337 sum -6.987 5.632 13.387 16.117 Atomic orbital electron populations 1.21959 0.98170 0.97889 1.02044 1.21914 0.92767 0.99979 1.01837 1.18654 0.93737 0.88976 0.81425 0.93531 1.21266 0.91074 1.38576 1.06010 0.92337 1.24875 0.98303 0.95013 0.95490 1.69910 1.34914 1.37835 1.09351 0.86520 0.85331 0.78352 0.77306 1.20649 1.21151 1.19948 1.46449 1.14864 1.57070 1.18122 1.19753 0.82141 0.78523 0.88735 1.90654 1.52826 1.57656 1.39209 1.20981 0.96004 0.95502 0.95186 1.21086 0.99463 0.94262 0.95462 1.21897 1.01583 0.98245 0.98978 1.21956 1.01313 1.00541 0.96736 1.21682 1.00421 0.95352 0.97242 1.21795 0.94481 0.97463 1.03144 1.21883 0.97342 0.95648 0.91933 1.60042 1.13298 1.12996 1.43890 1.21762 0.91440 0.92122 0.98977 0.93390 0.92553 0.96365 0.95421 0.88685 0.92718 0.78647 0.90532 0.92571 0.92840 0.91763 0.92458 0.92692 0.92585 0.91354 0.91635 0.89558 0.91853 0.91242 0.96130 0.84365 0.95372 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.57 37.16 0.32 -2.96 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.93 2.25 -69.08 -0.16 6.78 16 4 H 0.05 1.38 7.52 -51.93 -0.39 0.99 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.09 11.29 55.43 0.63 -24.46 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.72 -14.82 4.82 -54.93 -0.26 -15.08 16 14 C 0.52 10.13 2.55 -10.99 -0.03 10.10 16 15 O -0.53 -12.13 12.88 5.56 0.07 -12.06 16 16 C -0.07 -1.06 0.20 -155.57 -0.03 -1.09 16 17 C -0.08 -1.07 2.27 -90.61 -0.21 -1.28 16 18 C -0.15 -2.04 8.60 37.16 0.32 -1.72 16 19 C -0.15 -1.49 8.49 37.16 0.32 -1.17 16 20 C -0.11 -1.42 4.37 -26.61 -0.12 -1.54 16 21 C -0.13 -1.81 5.84 -26.65 -0.16 -1.96 16 22 C 0.06 0.78 6.55 -3.84 -0.03 0.75 16 23 N -0.67 -9.57 5.89 -113.81 -0.67 -10.24 16 24 C 0.09 1.19 4.10 -3.83 -0.02 1.18 16 25 H 0.05 1.19 7.91 -51.93 -0.41 0.77 16 26 H 0.06 1.23 3.16 -51.93 -0.16 1.07 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.38 7.15 7.46 -40.82 -0.30 6.85 16 32 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 33 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.09 7.22 -51.93 -0.37 0.71 16 36 H 0.06 0.54 6.38 -51.93 -0.33 0.20 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.54 6.41 -51.93 -0.33 0.21 16 39 H 0.07 0.89 7.21 -51.93 -0.37 0.52 16 40 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 41 H 0.09 1.48 4.84 -51.93 -0.25 1.23 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.34 4.14 8.90 -39.30 -0.35 3.79 16 46 H 0.03 0.33 6.39 -51.93 -0.33 0.00 16 47 H 0.08 1.22 6.34 -51.93 -0.33 0.89 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -29.91 338.47 -8.31 -38.22 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.83 Total: 11.60 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.32 Total: -8.93 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.31 Total: -49.78 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.06 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.91 -8.31 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.555 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds