Wall clock time and date at job start Tue Mar 31 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 H 1.08994 * 109.47408 * 304.99931 * 3 2 1 5 5 C 1.53006 * 109.47308 * 64.99799 * 3 2 1 6 6 C 1.53001 * 109.46836 * 184.99548 * 3 2 1 7 7 C 1.50701 * 109.47200 * 174.99972 * 6 3 2 8 8 O 1.21290 * 119.99544 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00782 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00960 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46613 * 34.99756 * 10 9 7 12 12 C 1.52998 * 109.46958 * 275.00168 * 10 9 7 13 13 C 1.53001 * 109.47229 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47259 * 59.99879 * 13 12 10 15 15 C 1.53012 * 109.46981 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47436 * 155.00040 * 10 9 7 17 17 H 1.08994 * 109.47294 * 59.99974 * 16 10 9 18 18 N 1.46505 * 109.47024 * 300.00014 * 16 10 9 19 19 C 1.36931 * 119.99788 * 155.00126 * 18 16 10 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 16 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 16 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47207 * 300.00002 * 1 2 3 29 29 H 1.08999 * 109.46933 * 60.00208 * 1 2 3 30 30 H 1.08996 * 109.47551 * 239.99603 * 2 1 3 31 31 H 1.08999 * 109.46933 * 119.99792 * 2 1 3 32 32 H 1.08997 * 109.46928 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47067 * 300.00077 * 5 3 2 34 34 H 1.09004 * 109.46784 * 59.99842 * 5 3 2 35 35 H 1.08997 * 109.46858 * 55.00362 * 6 3 2 36 36 H 1.09002 * 109.47691 * 294.99686 * 6 3 2 37 37 H 0.97002 * 119.99359 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47492 * 299.99710 * 12 10 9 39 39 H 1.09002 * 109.47259 * 59.99478 * 12 10 9 40 40 H 1.08998 * 109.47334 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.46839 * 299.99891 * 13 12 10 42 42 H 1.08994 * 109.47028 * 59.99969 * 14 13 12 43 43 H 1.08999 * 109.47724 * 180.02562 * 14 13 12 44 44 H 1.08994 * 109.47099 * 299.99784 * 15 14 13 45 45 H 1.08991 * 109.46870 * 179.97438 * 15 14 13 46 46 H 0.97000 * 119.99792 * 334.99921 * 18 16 10 47 47 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5648 1.4443 -0.1256 7 6 4.0570 2.8633 -0.2491 8 8 3.2660 3.7827 -0.2374 9 7 5.3760 3.1109 -0.3727 10 6 5.8545 4.4903 -0.4922 11 1 5.2291 5.1456 0.1140 12 6 5.7843 4.9294 -1.9562 13 6 6.2835 6.3703 -2.0810 14 6 7.7311 6.4526 -1.5927 15 6 7.8013 6.0135 -0.1287 16 6 7.3022 4.5721 -0.0042 17 1 7.9276 3.9168 -0.6104 18 7 7.3695 4.1516 1.3976 19 6 8.5380 3.6516 1.9071 20 1 9.4102 3.5675 1.2758 21 6 8.6033 3.2586 3.2369 22 7 7.5405 3.3615 4.0064 23 14 10.1995 2.5837 3.9340 24 1 11.2370 2.5700 2.8715 25 1 10.6518 3.4434 5.0571 26 1 9.9786 1.2005 4.4273 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9988 3.1541 1.3075 33 1 0.5488 2.1253 1.3969 34 1 2.0698 1.5876 2.1492 35 1 3.8570 0.8801 -1.0112 36 1 4.0030 0.9837 0.7598 37 1 6.0086 2.3756 -0.3818 38 1 6.4096 4.2742 -2.5625 39 1 4.7529 4.8711 -2.3039 40 1 6.2330 6.6833 -3.1239 41 1 5.6577 7.0253 -1.4748 42 1 8.3568 5.7976 -2.1989 43 1 8.0867 7.4792 -1.6812 44 1 7.1757 6.6686 0.4775 45 1 8.8327 6.0717 0.2190 46 1 6.5862 4.2275 1.9648 47 1 7.5861 3.0865 4.9356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225898902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:19 Heat of formation + Delta-G solvation = -68.646257 kcal Electronic energy + Delta-G solvation = -23361.572047 eV Core-core repulsion = 20156.761207 eV Total energy + Delta-G solvation = -3204.810840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79735 -38.07396 -36.12190 -34.03515 -33.62866 -31.15187 -30.80598 -29.30980 -27.94513 -26.93257 -24.08423 -23.69615 -22.03391 -21.05611 -20.13125 -19.80288 -19.22389 -17.22579 -16.54441 -15.93668 -15.40036 -14.93140 -14.74984 -14.18043 -14.09144 -13.86542 -13.64931 -13.46660 -13.09143 -12.94857 -12.63720 -12.36563 -12.20191 -12.08015 -11.82066 -11.64087 -11.26192 -11.08170 -10.93824 -10.84792 -10.75574 -10.69761 -10.53893 -10.52526 -10.47879 -10.29976 -10.14267 -9.74022 -9.62385 -9.26879 -8.91999 -8.47448 -6.99244 -5.79384 -3.08849 3.09168 3.39846 3.45851 3.48131 3.64447 4.54494 4.85382 4.88641 4.95160 5.08554 5.15203 5.24701 5.32483 5.37548 5.52340 5.53679 5.56287 5.68452 5.73741 5.74592 5.83183 5.85425 5.85596 5.91413 5.97778 5.99524 5.99831 6.08337 6.12917 6.13898 6.27767 6.34664 6.46816 6.50609 6.51665 6.54240 6.59747 6.69353 6.88059 6.96672 7.13261 7.66782 8.02676 8.37941 8.71327 9.49804 10.06717 10.42054 11.42683 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.005362 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.939488 B = 5220.877866 C = 7145.747015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.072 4.072 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.514 3.486 8 O -0.550 6.550 9 N -0.710 5.710 10 C 0.141 3.859 11 H 0.082 0.918 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.722 5.722 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 -2.807 -11.999 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.091 4.091 4 H 0.092 0.908 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.359 5.359 10 C 0.035 3.965 11 H 0.100 0.900 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.063 3.937 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.526 -2.238 -11.929 14.833 hybrid contribution 1.078 -0.702 0.756 1.492 sum -7.448 -2.941 -11.173 13.746 Atomic orbital electron populations 1.21801 0.95979 1.01157 1.02010 1.21604 0.95931 0.96489 1.01830 1.20870 0.92998 0.95522 0.99739 0.90757 1.21991 1.00577 1.02574 0.95980 1.21763 0.97501 0.94585 1.04077 1.20576 0.82368 0.91374 0.75566 1.90620 1.54828 1.46656 1.50737 1.45953 1.07206 1.09304 1.73411 1.21253 0.96823 0.82869 0.95511 0.89964 1.21862 1.01030 0.96566 0.96752 1.21470 0.96858 0.96436 1.00416 1.21579 0.96041 1.00499 0.97611 1.22229 1.02081 0.98817 0.94292 1.20469 0.91707 0.93692 0.87879 0.93264 1.42421 1.12790 1.75376 1.05636 1.19254 0.90113 1.33935 0.93795 0.91181 1.24729 0.97198 1.02250 0.96530 1.69683 1.27872 1.53621 1.06552 0.86172 0.83073 0.78325 0.78923 1.20597 1.21921 1.21943 0.93117 0.92371 0.92900 0.92241 0.91907 0.90509 0.93153 0.93272 0.89508 0.88742 0.76380 0.92169 0.92017 0.92474 0.92014 0.92424 0.92729 0.92492 0.91675 0.78140 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.06 16 2 C -0.12 -1.23 5.40 -26.73 -0.14 -1.37 16 3 C -0.07 -0.90 2.04 -90.62 -0.18 -1.09 16 4 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 5 C -0.15 -2.14 8.69 37.16 0.32 -1.82 16 6 C -0.14 -1.80 5.17 -27.88 -0.14 -1.94 16 7 C 0.51 8.41 7.51 -10.99 -0.08 8.33 16 8 O -0.55 -10.52 13.63 5.55 0.08 -10.44 16 9 N -0.71 -11.51 4.91 -53.81 -0.26 -11.77 16 10 C 0.14 2.40 1.98 -67.94 -0.13 2.27 16 11 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 12 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 13 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 14 C -0.12 -1.65 5.92 -26.73 -0.16 -1.80 16 15 C -0.13 -2.32 5.51 -26.70 -0.15 -2.47 16 16 C 0.17 3.26 2.30 -67.90 -0.16 3.11 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -17.22 4.95 -53.40 -0.26 -17.48 16 19 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 23 Si 0.90 21.87 29.55 -169.99 -5.02 16.84 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.29 5.95 -51.93 -0.31 0.98 16 33 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.40 6.18 8.60 -40.82 -0.35 5.83 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -29.74 365.81 -9.03 -38.77 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -8.77 Total: 13.71 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.02 Total: -8.32 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.20 Total: -56.07 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.74 -9.03 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225898902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.878 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds