Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 H 1.08994 * 109.47408 * 304.99931 * 3 2 1 5 5 C 1.53006 * 109.47308 * 64.99799 * 3 2 1 6 6 C 1.53001 * 109.46836 * 184.99548 * 3 2 1 7 7 C 1.50701 * 109.47200 * 174.99972 * 6 3 2 8 8 O 1.21290 * 119.99544 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00782 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00960 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46613 * 34.99756 * 10 9 7 12 12 C 1.52998 * 109.46958 * 275.00168 * 10 9 7 13 13 C 1.53001 * 109.47229 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47259 * 59.99879 * 13 12 10 15 15 C 1.53012 * 109.46981 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47436 * 155.00040 * 10 9 7 17 17 H 1.08994 * 109.47294 * 59.99974 * 16 10 9 18 18 N 1.46505 * 109.47024 * 300.00014 * 16 10 9 19 19 C 1.36931 * 119.99788 * 155.00126 * 18 16 10 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 16 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 16 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47207 * 300.00002 * 1 2 3 29 29 H 1.08999 * 109.46933 * 60.00208 * 1 2 3 30 30 H 1.08996 * 109.47551 * 239.99603 * 2 1 3 31 31 H 1.08999 * 109.46933 * 119.99792 * 2 1 3 32 32 H 1.08997 * 109.46928 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47067 * 300.00077 * 5 3 2 34 34 H 1.09004 * 109.46784 * 59.99842 * 5 3 2 35 35 H 1.08997 * 109.46858 * 55.00362 * 6 3 2 36 36 H 1.09002 * 109.47691 * 294.99686 * 6 3 2 37 37 H 0.97002 * 119.99359 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47492 * 299.99710 * 12 10 9 39 39 H 1.09002 * 109.47259 * 59.99478 * 12 10 9 40 40 H 1.08998 * 109.47334 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.46839 * 299.99891 * 13 12 10 42 42 H 1.08994 * 109.47028 * 59.99969 * 14 13 12 43 43 H 1.08999 * 109.47724 * 180.02562 * 14 13 12 44 44 H 1.08994 * 109.47099 * 299.99784 * 15 14 13 45 45 H 1.08991 * 109.46870 * 179.97438 * 15 14 13 46 46 H 0.97000 * 119.99792 * 334.99921 * 18 16 10 47 47 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5648 1.4443 -0.1256 7 6 4.0570 2.8633 -0.2491 8 8 3.2660 3.7827 -0.2374 9 7 5.3760 3.1109 -0.3727 10 6 5.8545 4.4903 -0.4922 11 1 5.2291 5.1456 0.1140 12 6 5.7843 4.9294 -1.9562 13 6 6.2835 6.3703 -2.0810 14 6 7.7311 6.4526 -1.5927 15 6 7.8013 6.0135 -0.1287 16 6 7.3022 4.5721 -0.0042 17 1 7.9276 3.9168 -0.6104 18 7 7.3695 4.1516 1.3976 19 6 8.5380 3.6516 1.9071 20 1 9.4102 3.5675 1.2758 21 6 8.6033 3.2586 3.2369 22 7 7.5405 3.3615 4.0064 23 14 10.1995 2.5837 3.9340 24 1 11.2370 2.5700 2.8715 25 1 10.6518 3.4434 5.0571 26 1 9.9786 1.2005 4.4273 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.9988 3.1541 1.3075 33 1 0.5488 2.1253 1.3969 34 1 2.0698 1.5876 2.1492 35 1 3.8570 0.8801 -1.0112 36 1 4.0030 0.9837 0.7598 37 1 6.0086 2.3756 -0.3818 38 1 6.4096 4.2742 -2.5625 39 1 4.7529 4.8711 -2.3039 40 1 6.2330 6.6833 -3.1239 41 1 5.6577 7.0253 -1.4748 42 1 8.3568 5.7976 -2.1989 43 1 8.0867 7.4792 -1.6812 44 1 7.1757 6.6686 0.4775 45 1 8.8327 6.0717 0.2190 46 1 6.5862 4.2275 1.9648 47 1 7.5861 3.0865 4.9356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225898902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = -86.367642 kcal Electronic energy + Delta-G solvation = -23362.340504 eV Core-core repulsion = 20156.761207 eV Total energy + Delta-G solvation = -3205.579297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12892 -39.40747 -37.17600 -35.81348 -35.00922 -32.99450 -31.80207 -30.54685 -29.47275 -28.17789 -25.65955 -24.98432 -23.30104 -22.48497 -21.39657 -20.93342 -20.49476 -19.14399 -17.89719 -17.31541 -16.68500 -16.48200 -15.88636 -15.64283 -15.45379 -15.09688 -14.96949 -14.71818 -14.61180 -14.15581 -14.03326 -13.62938 -13.48736 -13.37162 -12.92005 -12.87008 -12.78091 -12.70395 -12.20670 -12.18941 -12.13999 -12.01436 -12.00775 -11.72867 -11.64221 -11.52725 -11.42577 -11.38119 -11.08211 -10.96063 -10.52227 -9.84142 -8.99202 -7.91412 -5.20235 1.47963 1.49060 1.58325 1.78986 2.38146 2.57000 3.42250 3.69610 3.79811 3.86709 3.88550 4.01091 4.14726 4.25618 4.31423 4.33968 4.44414 4.47509 4.52697 4.59862 4.63647 4.70351 4.72549 4.75960 4.86146 4.91541 4.96062 5.02437 5.13157 5.16835 5.20810 5.24198 5.25263 5.29560 5.31480 5.34920 5.47558 5.52215 5.54220 5.58344 5.61668 5.75334 6.28652 6.71891 7.35313 7.41255 8.09298 8.33626 9.31979 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.005362 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.939488 B = 5220.877866 C = 7145.747015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.069 4.069 4 H 0.066 0.934 5 C -0.152 4.152 6 C -0.133 4.133 7 C 0.507 3.493 8 O -0.582 6.582 9 N -0.709 5.709 10 C 0.148 3.852 11 H 0.048 0.952 12 C -0.113 4.113 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.129 4.129 16 C 0.173 3.827 17 H 0.058 0.942 18 N -0.732 5.732 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.300 1.300 26 H -0.295 1.295 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.368 0.632 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 -3.817 -14.355 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.088 4.088 4 H 0.084 0.916 5 C -0.209 4.209 6 C -0.173 4.173 7 C 0.295 3.705 8 O -0.463 6.463 9 N -0.358 5.358 10 C 0.042 3.958 11 H 0.066 0.934 12 C -0.152 4.152 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.170 4.170 16 C 0.064 3.936 17 H 0.076 0.924 18 N -0.371 5.371 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.265 4.265 22 N -0.621 5.621 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.228 1.228 26 H -0.223 1.223 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.242 0.758 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.199 0.801 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.767 -3.245 -14.347 16.634 hybrid contribution 0.825 -0.329 1.452 1.702 sum -6.943 -3.573 -12.895 15.075 Atomic orbital electron populations 1.21805 0.95312 1.02056 1.01805 1.21565 0.96495 0.94550 1.02684 1.20851 0.92656 0.96987 0.98271 0.91578 1.21944 1.01354 1.00567 0.97018 1.21807 0.97717 0.92333 1.05418 1.21239 0.81997 0.92591 0.74639 1.90609 1.55550 1.48024 1.52109 1.45984 1.07493 1.09085 1.73277 1.21094 0.94700 0.82995 0.96964 0.93395 1.21787 1.01252 0.97765 0.94407 1.21478 0.96047 0.95332 1.02024 1.21512 0.96833 1.01805 0.94573 1.22107 1.00421 0.97357 0.97082 1.20675 0.93147 0.94499 0.85297 0.92403 1.42592 1.11469 1.75532 1.07457 1.19626 0.90895 1.31860 0.93810 0.90293 1.25475 1.00061 1.03818 0.97195 1.69849 1.30009 1.55833 1.06447 0.85155 0.79972 0.77013 0.78107 1.18793 1.22815 1.22281 0.91667 0.92999 0.92736 0.90572 0.91821 0.93956 0.91841 0.93603 0.86368 0.88832 0.75787 0.90316 0.92526 0.89481 0.93049 0.90897 0.90931 0.94290 0.93224 0.80088 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.67 71.98 0.70 -1.86 16 2 C -0.12 -2.12 5.40 30.60 0.17 -1.95 16 3 C -0.07 -1.66 2.04 -10.79 -0.02 -1.68 16 4 H 0.07 1.72 7.95 -2.39 -0.02 1.70 16 5 C -0.15 -4.31 8.69 71.98 0.63 -3.68 16 6 C -0.13 -3.31 5.17 29.85 0.15 -3.16 16 7 C 0.51 16.71 7.51 87.66 0.66 17.37 16 8 O -0.58 -23.01 13.63 -3.06 -0.04 -23.05 16 9 N -0.71 -22.94 4.91 -442.55 -2.17 -25.12 16 10 C 0.15 5.06 1.98 44.99 0.09 5.15 16 11 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 12 C -0.11 -3.05 5.49 30.59 0.17 -2.88 16 13 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 14 C -0.11 -2.73 5.92 30.60 0.18 -2.55 16 15 C -0.13 -4.43 5.51 30.61 0.17 -4.26 16 16 C 0.17 6.45 2.30 45.01 0.10 6.55 16 17 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 18 N -0.73 -35.51 4.95 -322.86 -1.60 -37.11 16 19 C -0.23 -12.18 9.93 84.04 0.83 -11.35 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 22 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 23 Si 0.97 45.24 29.55 68.60 2.03 47.26 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.92 6.56 -2.39 -0.02 0.91 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.49 5.95 -2.39 -0.01 1.48 16 33 H 0.06 1.58 6.56 -2.39 -0.02 1.56 16 34 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.41 12.24 8.60 -92.71 -0.80 11.45 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.37 20.20 7.80 -92.71 -0.72 19.48 16 47 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -65.83 365.81 2.38 -63.45 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -0.59 Total: 43.77 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.47 Total: -10.42 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.49 Total: -121.01 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.83 2.38 -63.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225898902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.921 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds