Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 H 1.09008 * 109.46895 * 55.00483 * 3 2 1 5 5 C 1.52994 * 109.47513 * 295.00366 * 3 2 1 6 6 C 1.53001 * 109.46939 * 174.99844 * 3 2 1 7 7 C 1.50701 * 109.47200 * 185.00305 * 6 3 2 8 8 O 1.21290 * 119.99544 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00782 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00960 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46613 * 34.99756 * 10 9 7 12 12 C 1.52998 * 109.46958 * 275.00168 * 10 9 7 13 13 C 1.53001 * 109.47229 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47259 * 59.99879 * 13 12 10 15 15 C 1.53012 * 109.46981 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47436 * 155.00040 * 10 9 7 17 17 H 1.08994 * 109.47294 * 59.99974 * 16 10 9 18 18 N 1.46505 * 109.47024 * 300.00014 * 16 10 9 19 19 C 1.36931 * 119.99788 * 155.00126 * 18 16 10 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 16 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 16 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46907 * 299.99403 * 1 2 3 29 29 H 1.08996 * 109.47189 * 59.99960 * 1 2 3 30 30 H 1.09002 * 109.47275 * 240.00718 * 2 1 3 31 31 H 1.08995 * 109.47697 * 120.00177 * 2 1 3 32 32 H 1.09003 * 109.47275 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47248 * 299.99569 * 5 3 2 34 34 H 1.08998 * 109.47085 * 59.99605 * 5 3 2 35 35 H 1.08997 * 109.46858 * 65.00695 * 6 3 2 36 36 H 1.09002 * 109.47691 * 305.00019 * 6 3 2 37 37 H 0.97002 * 119.99359 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.47492 * 299.99710 * 12 10 9 39 39 H 1.09002 * 109.47259 * 59.99478 * 12 10 9 40 40 H 1.08998 * 109.47334 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.46839 * 299.99891 * 13 12 10 42 42 H 1.08994 * 109.47028 * 59.99969 * 14 13 12 43 43 H 1.08999 * 109.47724 * 180.02562 * 14 13 12 44 44 H 1.08994 * 109.47099 * 299.99784 * 15 14 13 45 45 H 1.08991 * 109.46870 * 179.97438 * 15 14 13 46 46 H 0.97000 * 119.99792 * 334.99921 * 18 16 10 47 47 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1267 -1.3072 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2494 8 8 3.2658 3.7827 0.2384 9 7 5.3760 3.1110 0.3720 10 6 5.8544 4.4904 0.4927 11 1 5.1322 5.0770 1.0607 12 6 6.0196 5.0968 -0.9022 13 6 6.5186 6.5376 -0.7762 14 6 7.8665 6.5491 -0.0522 15 6 7.7012 5.9426 1.3429 16 6 7.2023 4.5013 1.2165 17 1 7.9244 3.9147 0.6485 18 7 7.0441 3.9206 2.5522 19 6 8.1186 3.3539 3.1840 20 1 9.0828 3.3352 2.6979 21 6 7.9700 2.8088 4.4520 22 7 9.0040 2.2689 5.0615 23 14 6.3024 2.8416 5.2932 24 1 5.5487 1.6100 4.9463 25 1 6.4915 2.9085 6.7646 26 1 5.5414 4.0325 4.8373 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.9988 3.1542 -1.3074 33 1 2.0698 1.5878 -2.1491 34 1 0.5488 2.1253 -1.3968 35 1 4.0029 0.9838 -0.7596 36 1 3.8571 0.8801 1.0114 37 1 6.0086 2.3758 0.3811 38 1 6.7416 4.5103 -1.4702 39 1 5.0593 5.0890 -1.4178 40 1 6.6359 6.9698 -1.7699 41 1 5.7962 7.1240 -0.2083 42 1 8.5888 5.9627 -0.6200 43 1 8.2218 7.5755 0.0380 44 1 6.9788 6.5290 1.9106 45 1 8.6614 5.9504 1.8584 46 1 6.1781 3.9377 2.9890 47 1 8.9002 1.8877 5.9474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225898912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -64.943033 kcal Electronic energy + Delta-G solvation = -23441.734482 eV Core-core repulsion = 20237.084225 eV Total energy + Delta-G solvation = -3204.650256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95651 -38.21339 -36.24870 -34.18025 -33.77114 -31.37999 -30.91621 -29.46432 -28.36100 -27.14939 -24.18822 -23.48393 -22.12773 -20.98879 -20.24731 -19.96213 -19.37592 -17.75517 -16.65519 -16.06047 -15.52164 -14.94363 -14.86424 -14.42927 -14.20853 -13.99139 -13.62568 -13.52670 -13.22196 -12.98936 -12.73486 -12.52956 -12.35437 -12.24611 -11.95255 -11.80766 -11.38227 -11.37395 -11.03246 -10.91245 -10.88563 -10.84894 -10.69222 -10.60762 -10.54784 -10.37482 -10.13112 -9.79784 -9.62633 -9.39321 -8.95779 -8.64244 -7.31884 -5.81874 -3.17491 2.92787 3.34191 3.40381 3.43091 3.49087 4.55319 4.73925 4.76518 4.83952 4.91770 5.04204 5.15549 5.22577 5.27710 5.41289 5.45403 5.46240 5.55270 5.58820 5.61771 5.64397 5.67818 5.77133 5.78504 5.86819 5.88196 5.91029 5.98498 6.00691 6.03718 6.13818 6.24392 6.37017 6.38567 6.39736 6.42032 6.45726 6.49838 6.80342 6.82721 7.00255 7.86655 7.93854 8.37082 8.55030 9.15428 9.88362 10.08221 11.36221 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.005888 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.397511 B = 4754.519064 C = 6661.491603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.152 4.152 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.548 6.548 9 N -0.713 5.713 10 C 0.137 3.863 11 H 0.082 0.918 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.178 3.822 17 H 0.059 0.941 18 N -0.746 5.746 19 C -0.244 4.244 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.932 5.932 23 Si 0.881 3.119 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.362 0.638 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 0.082 -14.211 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.209 4.209 6 C -0.180 4.180 7 C 0.299 3.701 8 O -0.427 6.427 9 N -0.363 5.363 10 C 0.032 3.968 11 H 0.100 0.900 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.068 3.932 17 H 0.077 0.923 18 N -0.389 5.389 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.580 5.580 23 Si 0.711 3.289 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.239 0.761 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.337 0.623 -14.130 18.126 hybrid contribution -0.714 -0.402 0.882 1.204 sum -12.051 0.221 -13.248 17.910 Atomic orbital electron populations 1.21801 0.95903 1.01266 1.02000 1.21602 0.96009 0.96329 1.01929 1.20897 0.93010 0.95759 0.99757 0.90484 1.21977 1.00826 1.02222 0.95868 1.21780 0.97501 0.94539 1.04220 1.20639 0.82309 0.91437 0.75737 1.90627 1.54760 1.46678 1.50617 1.46035 1.07387 1.09429 1.73458 1.21315 0.97266 0.82307 0.95936 0.90013 1.21848 1.01116 0.96236 0.96933 1.21481 0.97499 0.96197 1.00062 1.21575 0.96713 1.00406 0.97049 1.22194 1.02250 0.97568 0.95408 1.20449 0.92884 0.93083 0.86785 0.92289 1.42791 1.09746 1.70596 1.15730 1.19047 0.90233 1.29574 0.98477 0.89148 1.24633 0.96567 1.00562 0.97008 1.69692 1.28791 1.44346 1.15173 0.86614 0.85159 0.77838 0.79283 1.21140 1.21762 1.20395 0.93020 0.92760 0.92502 0.92048 0.91954 0.90672 0.93625 0.93000 0.89159 0.88858 0.76126 0.91925 0.91933 0.92319 0.92061 0.92190 0.92541 0.92601 0.91149 0.80554 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.12 -1.17 5.40 -26.73 -0.14 -1.31 16 3 C -0.08 -0.88 2.04 -90.62 -0.18 -1.06 16 4 H 0.08 1.04 7.96 -51.92 -0.41 0.63 16 5 C -0.15 -1.74 8.69 37.15 0.32 -1.41 16 6 C -0.14 -1.68 5.17 -27.88 -0.14 -1.82 16 7 C 0.51 7.81 7.51 -10.99 -0.08 7.73 16 8 O -0.55 -9.87 13.63 5.55 0.08 -9.79 16 9 N -0.71 -10.81 4.91 -53.81 -0.26 -11.07 16 10 C 0.14 2.20 1.98 -67.94 -0.13 2.06 16 11 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 12 C -0.12 -1.65 5.49 -26.73 -0.15 -1.80 16 13 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 14 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 15 C -0.13 -2.24 5.51 -26.70 -0.15 -2.38 16 16 C 0.18 3.21 2.30 -67.90 -0.16 3.05 16 17 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 18 N -0.75 -16.80 4.76 -53.40 -0.25 -17.06 16 19 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 20 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 23 Si 0.88 22.07 27.74 -169.99 -4.72 17.35 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.77 6.51 56.52 0.37 -6.40 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 6.56 -51.93 -0.34 0.14 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.04 5.95 -51.93 -0.31 0.73 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.40 5.76 8.60 -40.82 -0.35 5.41 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -30.68 362.69 -8.68 -39.35 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.73 Total: 11.41 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.03 Total: -7.82 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.26 Total: -55.96 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.68 -8.68 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225898912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.591 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds