Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46817 * 2 1 4 4 H 1.09006 * 110.63765 * 303.31484 * 3 2 1 5 5 C 1.55156 * 110.71903 * 66.45158 * 3 2 1 6 6 C 1.54906 * 101.61451 * 153.84569 * 5 3 2 7 7 N 1.47471 * 104.81210 * 323.04512 * 6 5 3 8 8 C 1.34774 * 125.62605 * 204.06544 * 7 6 5 9 9 O 1.21593 * 119.99746 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00354 * 0.02562 * 8 7 6 11 11 C 1.46502 * 120.00071 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46977 * 179.97438 * 11 10 8 13 13 C 1.52993 * 109.47705 * 300.00241 * 12 11 10 14 14 C 1.53007 * 109.47102 * 60.00705 * 12 11 10 15 15 C 1.50711 * 109.47014 * 179.97438 * 12 11 10 16 16 H 1.07993 * 119.99460 * 0.02562 * 15 12 11 17 17 C 1.37868 * 119.99656 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00784 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 119.99800 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47045 * 90.00162 * 19 17 15 21 21 H 1.48497 * 109.47364 * 210.00588 * 19 17 15 22 22 H 1.48507 * 109.46931 * 330.00070 * 19 17 15 23 23 C 1.47017 * 108.71970 * 24.07007 * 7 6 5 24 24 H 1.08998 * 109.88206 * 239.55467 * 23 7 6 25 25 C 1.53001 * 110.01051 * 118.46572 * 23 7 6 26 26 H 1.08996 * 109.47495 * 60.00150 * 1 2 3 27 27 H 1.09007 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47415 * 299.99474 * 1 2 3 29 29 H 1.09002 * 109.47103 * 240.00328 * 2 1 3 30 30 H 1.08996 * 109.47495 * 119.99850 * 2 1 3 31 31 H 1.09002 * 111.00677 * 271.94153 * 5 3 2 32 32 H 1.09002 * 111.00564 * 35.75411 * 5 3 2 33 33 H 1.09008 * 110.36753 * 81.85112 * 6 5 3 34 34 H 1.09001 * 110.37094 * 204.16995 * 6 5 3 35 35 H 0.97001 * 119.99938 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47155 * 300.00156 * 11 10 8 37 37 H 1.08997 * 109.47098 * 59.99950 * 11 10 8 38 38 H 1.09001 * 109.47219 * 59.99639 * 13 12 11 39 39 H 1.08992 * 109.47531 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46998 * 300.00005 * 13 12 11 41 41 H 1.08997 * 109.47324 * 59.99370 * 14 12 11 42 42 H 1.08995 * 109.47146 * 180.02562 * 14 12 11 43 43 H 1.09001 * 109.46409 * 299.99497 * 14 12 11 44 44 H 0.96995 * 120.00469 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.47479 * 302.11188 * 25 23 7 46 46 H 1.09003 * 109.47170 * 62.11068 * 25 23 7 47 47 H 1.09002 * 109.47458 * 182.10904 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6397 1.9915 -0.8525 5 6 1.6762 2.1533 1.3304 6 6 2.7873 3.2288 1.4233 7 7 3.9951 2.5698 0.8925 8 6 5.2666 2.9136 1.1781 9 8 6.1893 2.2970 0.6811 10 7 5.5155 3.9401 2.0152 11 6 6.8976 4.3133 2.3260 12 6 6.9006 5.5000 3.2916 13 6 6.1853 6.6870 2.6433 14 6 6.1755 5.1100 4.5813 15 6 8.3224 5.8836 3.6118 16 1 9.1419 5.3359 3.1704 17 6 8.5769 6.9336 4.4683 18 7 7.5790 7.6002 5.0063 19 14 10.3393 7.4095 4.8647 20 1 10.8116 8.4198 3.8842 21 1 10.4017 7.9813 6.2337 22 1 11.2056 6.2055 4.7912 23 6 3.5827 1.4763 0.0006 24 1 3.9741 0.5286 0.3705 25 6 4.0981 1.7341 -1.4167 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.6903 2.6143 1.2703 32 1 1.7311 1.4613 2.1708 33 1 2.5290 4.0947 0.8136 34 1 2.9414 3.5265 2.4604 35 1 4.7794 4.4317 2.4120 36 1 7.4074 3.4676 2.7875 37 1 7.4142 4.5915 1.4074 38 1 5.1569 6.4093 2.4121 39 1 6.1878 7.5325 3.3311 40 1 6.7020 6.9648 1.7246 41 1 6.6850 4.2644 5.0432 42 1 6.1771 5.9556 5.2690 43 1 5.1471 4.8323 4.3500 44 1 7.7581 8.3387 5.6092 45 1 3.7176 2.6913 -1.7733 46 1 5.1878 1.7566 -1.4086 47 1 3.7561 0.9381 -2.0782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229841912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -50.024210 kcal Electronic energy + Delta-G solvation = -23389.321907 eV Core-core repulsion = 20185.318579 eV Total energy + Delta-G solvation = -3204.003328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23415 -38.12436 -36.23112 -34.10629 -33.21531 -31.44405 -30.78984 -29.69028 -25.98559 -25.69614 -25.55754 -24.81009 -22.97511 -22.39564 -20.37741 -19.31932 -18.74061 -17.60577 -16.37240 -15.80571 -15.12692 -14.95802 -14.79707 -14.40112 -14.27030 -13.70797 -13.59371 -13.21823 -13.00400 -12.79830 -12.66408 -12.33417 -12.24112 -12.14619 -11.90770 -11.59037 -11.36395 -11.33313 -11.16721 -10.86615 -10.84174 -10.76762 -10.66578 -10.54166 -10.35021 -10.17787 -9.62829 -9.59748 -9.26803 -8.76173 -8.59492 -8.37433 -8.05418 -5.99758 -4.09556 2.98072 3.30113 3.36909 3.41504 3.68629 4.24423 4.39321 4.43287 4.55089 4.62908 4.94886 5.10519 5.13232 5.16846 5.27005 5.27223 5.40538 5.52456 5.55529 5.58891 5.66154 5.73807 5.78064 5.88492 5.96638 6.03924 6.15092 6.25659 6.35839 6.40872 6.53113 6.57860 6.84560 6.85726 6.97618 7.06443 7.16057 7.39249 7.50083 7.58841 7.72354 8.03878 8.15437 8.41316 8.51160 8.90495 9.12166 9.56098 11.01732 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.003451 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.671101 B = 8110.582345 C = 8506.593397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.085 0.915 5 C -0.126 4.126 6 C 0.099 3.901 7 N -0.639 5.639 8 C 0.716 3.284 9 O -0.596 6.596 10 N -0.732 5.732 11 C 0.151 3.849 12 C 0.056 3.944 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.159 3.841 24 H 0.071 0.929 25 C -0.162 4.162 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.005 0.995 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.259 0.741 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 -10.238 -7.878 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.116 4.116 4 H 0.103 0.897 5 C -0.164 4.164 6 C -0.025 4.025 7 N -0.379 5.379 8 C 0.418 3.582 9 O -0.475 6.475 10 N -0.387 5.387 11 C 0.028 3.972 12 C 0.055 3.945 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.055 3.945 24 H 0.089 0.911 25 C -0.220 4.220 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.973 -10.490 -8.073 19.985 hybrid contribution 0.569 0.623 0.440 0.952 sum -14.404 -9.867 -7.633 19.055 Atomic orbital electron populations 1.21762 0.95559 1.01579 1.01938 1.21506 0.95976 0.95257 1.02400 1.22366 0.93946 0.96858 0.98430 0.89683 1.22833 0.98147 0.97721 0.97687 1.22241 0.85123 0.95814 0.99301 1.47680 1.03871 1.35993 1.50326 1.15594 0.81221 0.81293 0.80102 1.90864 1.42443 1.56576 1.57609 1.45536 1.10791 1.33676 1.48648 1.21575 0.78620 0.98198 0.98849 1.18359 0.96065 0.89449 0.90577 1.21811 0.94896 1.02077 0.99892 1.21812 0.94844 1.01288 1.00715 1.20996 0.90937 1.15221 1.27146 0.92402 1.24875 0.97024 0.96009 0.95610 1.69805 1.30104 1.21319 1.31331 0.86572 0.85062 0.78738 0.77504 1.20728 1.21292 1.19893 1.21323 0.92983 0.90110 0.90117 0.91113 1.22153 1.03332 1.01140 0.95395 0.92745 0.92802 0.92511 0.91671 0.91648 0.90036 0.90513 0.91746 0.90890 0.77212 0.93020 0.93022 0.97642 0.89653 0.95476 0.95460 0.89638 0.97689 0.93048 0.92821 0.90896 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.76 37.16 0.36 -0.57 16 2 C -0.11 -0.84 5.29 -26.73 -0.14 -0.98 16 3 C -0.10 -0.85 2.50 -88.79 -0.22 -1.07 16 4 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 5 C -0.13 -1.07 5.69 -24.58 -0.14 -1.21 16 6 C 0.10 1.11 6.58 -2.50 -0.02 1.09 16 7 N -0.64 -9.44 3.07 -168.66 -0.52 -9.95 16 8 C 0.72 13.73 8.28 -86.92 -0.72 13.01 16 9 O -0.60 -13.52 15.39 5.28 0.08 -13.44 16 10 N -0.73 -14.04 4.92 -65.23 -0.32 -14.36 16 11 C 0.15 3.35 4.50 -4.04 -0.02 3.34 16 12 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 13 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 14 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 15 C -0.50 -13.43 8.01 -34.44 -0.28 -13.70 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.83 9.35 55.43 0.52 -23.31 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.16 1.97 3.05 -66.96 -0.20 1.77 16 24 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 25 C -0.16 -2.02 9.11 37.16 0.34 -1.68 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.34 7.49 -51.93 -0.39 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.07 0.82 7.30 -51.93 -0.38 0.44 16 35 H 0.39 6.87 4.64 -40.82 -0.19 6.68 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.14 6.90 -51.93 -0.36 0.78 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -29.42 357.77 -8.98 -38.40 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.50 Total: 3.78 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.61 Total: -2.42 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.32 Total: -47.63 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.42 -8.98 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229841912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.624 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds