Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09005 * 110.63773 * 51.85905 * 3 2 1 5 5 C 1.55151 * 110.87261 * 288.60671 * 3 2 1 6 6 C 1.55126 * 101.48568 * 205.89731 * 5 3 2 7 7 N 1.47426 * 104.72264 * 37.30087 * 6 5 3 8 8 C 1.34774 * 125.64938 * 155.81652 * 7 6 5 9 9 O 1.21586 * 120.00048 * 179.68910 * 8 7 6 10 10 N 1.34773 * 119.99940 * 359.69271 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52993 * 109.47254 * 300.00146 * 12 11 10 14 14 C 1.53008 * 109.47007 * 59.99821 * 12 11 10 15 15 C 1.50696 * 109.46969 * 179.97438 * 12 11 10 16 16 H 1.07997 * 120.00408 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99883 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99834 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47025 * 59.99930 * 19 17 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47148 * 300.00133 * 19 17 15 23 23 C 1.47025 * 108.69832 * 335.55013 * 7 6 5 24 24 H 1.08997 * 109.87784 * 120.70875 * 23 7 6 25 25 C 1.53002 * 109.87868 * 241.71539 * 23 7 6 26 26 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47288 * 299.99539 * 1 2 3 28 28 H 1.09000 * 109.47111 * 59.99932 * 1 2 3 29 29 H 1.08996 * 109.47288 * 240.00461 * 2 1 3 30 30 H 1.09000 * 109.47111 * 120.00068 * 2 1 3 31 31 H 1.08998 * 111.00740 * 324.14201 * 5 3 2 32 32 H 1.09008 * 111.00132 * 87.95509 * 5 3 2 33 33 H 1.08997 * 110.49850 * 278.45663 * 6 5 3 34 34 H 1.09001 * 110.34269 * 156.06429 * 6 5 3 35 35 H 0.97005 * 120.00161 * 359.72198 * 10 8 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 37 37 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 38 38 H 1.09002 * 109.47712 * 59.99463 * 13 12 11 39 39 H 1.08995 * 109.47426 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.47145 * 299.99770 * 13 12 11 41 41 H 1.09004 * 109.46786 * 59.99901 * 14 12 11 42 42 H 1.08995 * 109.46766 * 180.02562 * 14 12 11 43 43 H 1.09002 * 109.47164 * 300.00057 * 14 12 11 44 44 H 0.96999 * 119.99905 * 179.97438 * 18 17 15 45 45 H 1.08994 * 109.47581 * 58.55254 * 25 23 7 46 46 H 1.09006 * 109.46497 * 178.54936 * 25 23 7 47 47 H 1.09001 * 109.47192 * 298.54566 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0148 0.8023 5 6 1.7881 2.1179 -1.3739 6 6 2.9037 3.1955 -1.3975 7 7 4.0634 2.5484 -0.7573 8 6 5.3544 2.8860 -0.9458 9 8 6.2323 2.2841 -0.3581 10 7 5.6725 3.8909 -1.7857 11 6 7.0760 4.2576 -1.9910 12 6 7.1602 5.4141 -2.9891 13 6 6.5454 4.9832 -4.3221 14 6 6.3935 6.6188 -2.4396 15 6 8.6038 5.7916 -3.1998 16 1 9.3833 5.2596 -2.6747 17 6 8.9296 6.8163 -4.0629 18 7 7.9804 7.4645 -4.7019 19 14 10.7191 7.2838 -4.3247 20 1 11.4630 6.1148 -4.8586 21 1 10.8009 8.4064 -5.2933 22 1 11.3160 7.7013 -3.0306 23 6 3.5777 1.4780 0.1258 24 1 3.9973 0.5215 -0.1857 25 6 3.9779 1.7752 1.5724 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9121 1.4044 -2.1886 32 1 0.8008 2.5786 -1.4076 33 1 2.5979 4.0740 -0.8293 34 1 3.1425 3.4713 -2.4247 35 1 4.9724 4.3686 -2.2576 36 1 7.5139 4.5645 -1.0412 37 1 7.6222 3.3993 -2.3824 38 1 5.5012 4.7104 -4.1694 39 1 6.6058 5.8070 -5.0333 40 1 7.0916 4.1250 -4.7136 41 1 6.8315 6.9258 -1.4898 42 1 6.4531 7.4426 -3.1508 43 1 5.3493 6.3460 -2.2868 44 1 8.2095 8.1856 -5.3089 45 1 3.5616 2.7361 1.8745 46 1 3.5926 0.9912 2.2243 47 1 5.0647 1.8098 1.6489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229841924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -49.900984 kcal Electronic energy + Delta-G solvation = -23384.245489 eV Core-core repulsion = 20180.247505 eV Total energy + Delta-G solvation = -3203.997984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23249 -38.11710 -36.22950 -34.10590 -33.21363 -31.42924 -30.79589 -29.70364 -25.98023 -25.69509 -25.55610 -24.80883 -22.93240 -22.41335 -20.40836 -19.31811 -18.73991 -17.61165 -16.35477 -15.80176 -15.11846 -14.95143 -14.79910 -14.40674 -14.27755 -13.70831 -13.58073 -13.21589 -13.02225 -12.79173 -12.66666 -12.31455 -12.25459 -12.14508 -11.90573 -11.57581 -11.38657 -11.33275 -11.16074 -10.86536 -10.82534 -10.76204 -10.70202 -10.53968 -10.34737 -10.17769 -9.62790 -9.59514 -9.26717 -8.76878 -8.59483 -8.37053 -8.05370 -5.99607 -4.09421 2.98211 3.32083 3.36005 3.40224 3.68676 4.24656 4.39336 4.42843 4.54698 4.62789 4.95181 5.10725 5.12753 5.16848 5.27078 5.27261 5.40490 5.52600 5.55729 5.58948 5.65964 5.73835 5.77855 5.89113 5.96022 6.03667 6.15294 6.25868 6.35959 6.40895 6.53234 6.58023 6.84575 6.85769 6.97662 7.06515 7.16059 7.39268 7.50114 7.58898 7.72301 8.03966 8.15445 8.41438 8.51209 8.90362 9.12160 9.56093 11.01876 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037954 B = 0.003444 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.555820 B = 8127.648568 C = 8520.639708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.085 0.915 5 C -0.126 4.126 6 C 0.099 3.901 7 N -0.639 5.639 8 C 0.716 3.284 9 O -0.596 6.596 10 N -0.732 5.732 11 C 0.151 3.849 12 C 0.057 3.943 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.505 4.505 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.159 3.841 24 H 0.071 0.929 25 C -0.162 4.162 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.260 0.740 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 -10.009 6.864 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.116 4.116 4 H 0.103 0.897 5 C -0.164 4.164 6 C -0.025 4.025 7 N -0.379 5.379 8 C 0.418 3.582 9 O -0.475 6.475 10 N -0.387 5.387 11 C 0.028 3.972 12 C 0.056 3.944 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.544 4.544 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C 0.054 3.946 24 H 0.089 0.911 25 C -0.220 4.220 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.600 -10.248 7.131 19.981 hybrid contribution 0.613 0.593 -0.411 0.946 sum -14.987 -9.655 6.721 19.052 Atomic orbital electron populations 1.21761 0.95562 1.01577 1.01913 1.21508 0.95963 0.95256 1.02415 1.22369 0.94185 0.96983 0.98073 0.89693 1.22870 0.98297 0.97862 0.97330 1.22273 0.86198 0.95900 0.98102 1.47675 1.04006 1.37709 1.48498 1.15590 0.80902 0.81125 0.80588 1.90862 1.46421 1.56739 1.53468 1.45538 1.10821 1.35657 1.46640 1.21578 0.77823 0.98276 0.99569 1.18349 0.96044 0.89615 0.90392 1.21811 0.94849 1.01071 1.00936 1.21815 0.94673 1.01885 1.00305 1.20959 0.90977 1.17015 1.25455 0.92456 1.24876 0.97236 0.95936 0.95445 1.69794 1.31498 1.22769 1.28494 0.86629 0.85260 0.77981 0.77964 1.20285 1.21350 1.20279 1.21335 0.92543 0.90558 0.90122 0.91112 1.22156 1.03584 1.01083 0.95218 0.92795 0.92740 0.92555 0.91639 0.91653 0.90485 0.90064 0.91720 0.90903 0.77212 0.93017 0.93029 0.97677 0.89649 0.95472 0.95466 0.89645 0.97656 0.92986 0.92832 0.92265 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.80 37.16 0.36 -0.56 16 2 C -0.11 -0.84 5.29 -26.73 -0.14 -0.98 16 3 C -0.10 -0.85 2.44 -88.79 -0.22 -1.07 16 4 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 5 C -0.13 -1.07 5.96 -24.47 -0.15 -1.22 16 6 C 0.10 1.11 6.59 -2.41 -0.02 1.10 16 7 N -0.64 -9.44 3.06 -168.56 -0.52 -9.96 16 8 C 0.72 13.74 8.28 -86.92 -0.72 13.02 16 9 O -0.60 -13.52 15.37 5.29 0.08 -13.44 16 10 N -0.73 -14.05 4.92 -65.22 -0.32 -14.37 16 11 C 0.15 3.35 4.50 -4.04 -0.02 3.34 16 12 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 13 C -0.13 -2.96 8.08 37.15 0.30 -2.66 16 14 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 15 C -0.51 -13.46 8.01 -34.44 -0.28 -13.74 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.89 -23.84 9.35 55.43 0.52 -23.32 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.16 1.97 3.05 -66.95 -0.20 1.76 16 24 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 25 C -0.16 -2.02 9.11 37.16 0.34 -1.68 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 7.69 -51.93 -0.40 -0.07 16 29 H 0.06 0.51 8.01 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.67 7.95 -51.93 -0.41 0.25 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.82 7.28 -51.93 -0.38 0.44 16 35 H 0.39 6.87 4.63 -40.82 -0.19 6.69 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 39 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.15 6.87 -51.93 -0.36 0.79 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -29.40 358.00 -8.97 -38.37 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.50 Total: 3.83 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.61 Total: -2.44 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.32 Total: -47.64 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.40 -8.97 -38.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229841924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.529 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds