Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47288 * 2 1 4 4 H 1.09004 * 110.63987 * 303.31436 * 3 2 1 5 5 C 1.55156 * 110.72158 * 66.45056 * 3 2 1 6 6 C 1.54906 * 101.58481 * 154.04443 * 5 3 2 7 7 N 1.47431 * 104.83225 * 322.99548 * 6 5 3 8 8 C 1.34775 * 125.65080 * 204.09524 * 7 6 5 9 9 O 1.21584 * 120.00076 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99605 * 0.02562 * 8 7 6 11 11 C 1.46509 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47235 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47098 * 59.99583 * 12 11 10 14 14 C 1.52997 * 109.46899 * 299.99725 * 12 11 10 15 15 C 1.50699 * 109.46972 * 179.97438 * 12 11 10 16 16 H 1.07998 * 119.99961 * 357.91064 * 15 12 11 17 17 C 1.37872 * 119.99847 * 177.90687 * 15 12 11 18 18 N 1.31517 * 120.00500 * 7.60223 * 17 15 12 19 19 Si 1.86800 * 120.00173 * 187.60304 * 17 15 12 20 20 H 1.48501 * 109.47094 * 265.12320 * 19 17 15 21 21 H 1.48507 * 109.47069 * 25.11589 * 19 17 15 22 22 H 1.48495 * 109.47573 * 145.12044 * 19 17 15 23 23 C 1.47022 * 108.69936 * 24.35146 * 7 6 5 24 24 H 1.09005 * 109.87692 * 118.13595 * 23 7 6 25 25 C 1.53005 * 109.88405 * 239.29577 * 23 7 6 26 26 H 1.09003 * 109.47156 * 60.00035 * 1 2 3 27 27 H 1.09004 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47079 * 300.00067 * 1 2 3 29 29 H 1.09000 * 109.47544 * 240.00023 * 2 1 3 30 30 H 1.09003 * 109.47156 * 119.99965 * 2 1 3 31 31 H 1.09005 * 111.00191 * 35.96991 * 5 3 2 32 32 H 1.09001 * 111.04050 * 272.13902 * 5 3 2 33 33 H 1.09004 * 110.37021 * 204.15771 * 6 5 3 34 34 H 1.08994 * 110.36579 * 81.83011 * 6 5 3 35 35 H 0.96997 * 120.00423 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.46849 * 59.99461 * 11 10 8 37 37 H 1.09005 * 109.46610 * 299.99621 * 11 10 8 38 38 H 1.08997 * 109.47169 * 185.79462 * 13 12 11 39 39 H 1.09002 * 109.47084 * 305.78817 * 13 12 11 40 40 H 1.08994 * 109.47141 * 65.79078 * 13 12 11 41 41 H 1.08999 * 109.47026 * 299.99798 * 14 12 11 42 42 H 1.09000 * 109.47568 * 60.00323 * 14 12 11 43 43 H 1.09001 * 109.47241 * 180.02562 * 14 12 11 44 44 H 0.96991 * 120.00823 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.46592 * 58.54717 * 25 23 7 46 46 H 1.08999 * 109.47260 * 178.55007 * 25 23 7 47 47 H 1.09003 * 109.46965 * 298.55236 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6399 1.9915 -0.8524 5 6 1.6764 2.1533 1.3303 6 6 2.7848 3.2317 1.4198 7 7 3.9936 2.5756 0.8889 8 6 5.2646 2.9227 1.1724 9 8 6.1881 2.3083 0.6744 10 7 5.5119 3.9508 2.0080 11 6 6.8936 4.3286 2.3158 12 6 6.8948 5.5156 3.2811 13 6 6.1735 5.1237 4.5723 14 6 6.1745 6.7000 2.6338 15 6 8.3161 5.9037 3.5982 16 1 9.1361 5.3372 3.1823 17 6 8.5694 6.9820 4.4192 18 7 7.5787 7.5794 5.0447 19 14 10.3198 7.5946 4.6431 20 1 10.9080 6.9785 5.8595 21 1 11.1310 7.2198 3.4569 22 1 10.3122 9.0722 4.7908 23 6 3.5828 1.4837 -0.0059 24 1 3.9466 1.6751 -1.0154 25 6 4.1382 0.1536 0.5071 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7349 1.4622 2.1713 32 1 0.6891 2.6116 1.2720 33 1 2.9400 3.5312 2.4564 34 1 2.5233 4.0960 0.8095 35 1 4.7752 4.4412 2.4050 36 1 7.4076 4.6072 1.3959 37 1 7.4066 3.4848 2.7774 38 1 6.0836 5.9974 5.2178 39 1 5.1797 4.7453 4.3328 40 1 6.7430 4.3494 5.0860 41 1 6.6884 6.9792 1.7140 42 1 5.1465 6.4191 2.4048 43 1 6.1757 7.5459 3.3213 44 1 7.7568 8.3382 5.6219 45 1 3.7745 -0.0260 1.5187 46 1 3.8085 -0.6541 -0.1464 47 1 5.2275 0.1933 0.5143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229841927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = -45.727734 kcal Electronic energy + Delta-G solvation = -23454.199717 eV Core-core repulsion = 20250.382699 eV Total energy + Delta-G solvation = -3203.817018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30996 -38.20760 -36.23601 -34.16662 -33.16728 -31.31395 -30.82213 -29.64007 -25.83269 -25.70390 -25.57939 -24.87650 -23.18072 -22.76234 -19.94044 -19.05588 -18.68506 -17.89202 -16.07208 -15.86397 -15.44139 -15.08288 -14.73680 -14.47669 -14.26067 -13.84311 -13.40451 -13.27427 -12.91319 -12.78196 -12.71349 -12.29103 -12.18188 -12.14598 -11.87710 -11.61352 -11.40292 -11.31762 -11.16104 -10.84660 -10.81993 -10.71372 -10.65490 -10.44751 -10.34756 -10.18267 -9.62063 -9.59243 -9.27201 -8.78354 -8.59464 -8.35327 -8.05672 -6.00702 -4.08611 2.98030 3.29608 3.37144 3.42509 3.68308 4.24370 4.39423 4.44324 4.55686 4.63873 4.96068 5.08533 5.13622 5.15222 5.26436 5.31345 5.41412 5.49436 5.57265 5.59566 5.73293 5.76147 5.76611 5.86350 5.95700 6.06414 6.17633 6.22746 6.37482 6.40708 6.53605 6.60305 6.83655 6.85930 6.96833 7.05851 7.15966 7.39181 7.49745 7.58151 7.72793 8.01855 8.14727 8.40783 8.51039 8.90896 9.12024 9.56384 11.01423 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039723 B = 0.003449 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.712323 B = 8117.016447 C = 8507.865077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.082 0.918 5 C -0.124 4.124 6 C 0.098 3.902 7 N -0.639 5.639 8 C 0.716 3.284 9 O -0.595 6.595 10 N -0.732 5.732 11 C 0.151 3.849 12 C 0.056 3.944 13 C -0.127 4.127 14 C -0.128 4.128 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.891 3.109 20 H -0.282 1.282 21 H -0.273 1.273 22 H -0.286 1.286 23 C 0.159 3.841 24 H 0.069 0.931 25 C -0.163 4.163 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.393 0.607 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.002 0.998 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.006 0.994 43 H 0.080 0.920 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 -10.677 -7.435 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.100 0.900 5 C -0.162 4.162 6 C -0.025 4.025 7 N -0.379 5.379 8 C 0.418 3.582 9 O -0.474 6.474 10 N -0.387 5.387 11 C 0.028 3.972 12 C 0.055 3.945 13 C -0.185 4.185 14 C -0.186 4.186 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.198 1.198 22 H -0.212 1.212 23 C 0.055 3.945 24 H 0.087 0.913 25 C -0.221 4.221 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.021 0.979 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.025 0.975 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.971 -10.920 -7.639 20.044 hybrid contribution 0.562 0.713 0.379 0.984 sum -14.410 -10.207 -7.260 19.093 Atomic orbital electron populations 1.21794 0.95808 1.01525 1.01870 1.21602 0.95600 0.95371 1.02579 1.22309 0.94008 0.96919 0.98361 0.89959 1.22818 0.98110 0.97634 0.97673 1.22240 0.85134 0.95829 0.99325 1.47679 1.03879 1.35644 1.50666 1.15587 0.81219 0.81237 0.80141 1.90860 1.42371 1.56723 1.57493 1.45546 1.10799 1.33617 1.48715 1.21565 0.78628 0.98164 0.98868 1.18359 0.96082 0.89408 0.90609 1.21843 0.94988 1.01447 1.00202 1.21779 0.95117 1.01869 0.99812 1.20980 0.90919 1.13339 1.29261 0.92385 1.24869 0.96975 0.96509 0.95053 1.69845 1.30651 1.22469 1.29398 0.86589 0.85052 0.77980 0.78448 1.20839 1.19822 1.21219 1.21278 0.92992 0.86931 0.93318 0.91310 1.22229 1.03118 0.96015 1.00773 0.92834 0.92837 0.92561 0.91640 0.91180 0.90541 0.90064 0.90925 0.91697 0.77209 0.92990 0.93021 0.89678 0.97885 0.95287 0.95365 0.97459 0.90135 0.93080 0.92743 0.91983 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.76 37.16 0.36 -0.58 16 2 C -0.11 -0.83 4.16 -26.73 -0.11 -0.94 16 3 C -0.10 -0.84 2.89 -88.79 -0.26 -1.10 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.12 -1.06 5.69 -24.58 -0.14 -1.20 16 6 C 0.10 1.10 6.57 -2.53 -0.02 1.08 16 7 N -0.64 -9.40 3.08 -168.68 -0.52 -9.92 16 8 C 0.72 13.69 8.27 -86.92 -0.72 12.98 16 9 O -0.60 -13.47 15.23 5.29 0.08 -13.38 16 10 N -0.73 -14.01 4.87 -65.22 -0.32 -14.32 16 11 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 12 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 13 C -0.13 -2.93 8.07 37.16 0.30 -2.63 16 14 C -0.13 -2.93 8.06 37.16 0.30 -2.63 16 15 C -0.51 -13.49 8.00 -34.44 -0.28 -13.76 16 16 H 0.06 1.56 7.76 -52.49 -0.41 1.16 16 17 C 0.07 1.79 5.11 -17.82 -0.09 1.70 16 18 N -0.89 -23.80 9.49 55.43 0.53 -23.28 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 C 0.16 1.96 3.45 -66.95 -0.23 1.73 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 C -0.16 -2.02 7.94 37.16 0.29 -1.72 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.34 7.48 -51.93 -0.39 -0.05 16 29 H 0.06 0.46 7.59 -51.93 -0.39 0.07 16 30 H 0.07 0.54 6.64 -51.93 -0.34 0.20 16 31 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.07 0.82 7.30 -51.93 -0.38 0.44 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 6.85 4.64 -40.82 -0.19 6.66 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 2.14 6.16 -51.93 -0.32 1.82 16 39 H 0.00 0.05 6.72 -51.93 -0.35 -0.30 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 43 H 0.08 2.01 6.21 -51.93 -0.32 1.69 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.05 0.66 7.54 -51.93 -0.39 0.27 16 46 H 0.06 0.61 6.71 -51.93 -0.35 0.26 16 47 H 0.07 1.14 6.73 -51.93 -0.35 0.79 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -29.43 352.57 -8.94 -38.36 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.32 Total: 3.80 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.68 Total: -2.48 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.31 Total: -47.52 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.43 -8.94 -38.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229841927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.363 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds