Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08998 * 110.64249 * 56.69538 * 3 2 1 5 5 C 1.55148 * 110.72371 * 293.54643 * 3 2 1 6 6 C 1.54910 * 101.58436 * 206.13751 * 5 3 2 7 7 N 1.47428 * 104.83368 * 37.00600 * 6 5 3 8 8 C 1.34770 * 125.64880 * 155.90510 * 7 6 5 9 9 O 1.21589 * 120.00079 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00256 * 359.97438 * 8 7 6 11 11 C 1.46506 * 120.00171 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47106 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47111 * 300.00205 * 12 11 10 14 14 C 1.53003 * 109.47077 * 60.00330 * 12 11 10 15 15 C 1.50693 * 109.47070 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99929 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99929 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00157 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99975 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47374 * 89.99603 * 19 17 15 21 21 H 1.48502 * 109.46995 * 209.99830 * 19 17 15 22 22 H 1.48503 * 109.47064 * 329.99813 * 19 17 15 23 23 C 1.47027 * 108.70105 * 335.87764 * 7 6 5 24 24 H 1.08995 * 109.88143 * 241.63791 * 23 7 6 25 25 C 1.52996 * 109.88192 * 120.47162 * 23 7 6 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 30 30 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 31 31 H 1.08997 * 111.00904 * 324.21163 * 5 3 2 32 32 H 1.08995 * 111.00744 * 88.02600 * 5 3 2 33 33 H 1.09001 * 110.37268 * 155.84701 * 6 5 3 34 34 H 1.09003 * 110.36660 * 278.16921 * 6 5 3 35 35 H 0.97003 * 119.99842 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47001 * 300.00631 * 11 10 8 37 37 H 1.09004 * 109.46438 * 60.00748 * 11 10 8 38 38 H 1.09010 * 109.46919 * 60.00147 * 13 12 11 39 39 H 1.09001 * 109.47295 * 179.97438 * 13 12 11 40 40 H 1.08992 * 109.47274 * 300.00254 * 13 12 11 41 41 H 1.08997 * 109.47219 * 59.99572 * 14 12 11 42 42 H 1.09001 * 109.47027 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.46985 * 299.99704 * 14 12 11 44 44 H 0.96996 * 119.99746 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47789 * 302.19058 * 25 23 7 46 46 H 1.09003 * 109.47394 * 62.19198 * 25 23 7 47 47 H 1.08999 * 109.47279 * 182.18963 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6399 1.9915 0.8525 5 6 1.6763 2.1533 -1.3303 6 6 2.7875 3.2288 -1.4221 7 7 3.9952 2.5699 -0.8924 8 6 5.2667 2.9135 -1.1780 9 8 6.1894 2.2971 -0.6809 10 7 5.5156 3.9404 -2.0147 11 6 6.8978 4.3143 -2.3247 12 6 6.9008 5.5015 -3.2898 13 6 6.1763 5.1118 -4.5798 14 6 6.1849 6.6879 -2.6412 15 6 8.3225 5.8856 -3.6092 16 1 9.1420 5.3376 -3.1682 17 6 8.5771 6.9368 -4.4643 18 7 7.5792 7.6038 -5.0017 19 14 10.3395 7.4126 -4.8607 20 1 10.8004 6.6560 -6.0525 21 1 10.4077 8.8691 -5.1422 22 1 11.2116 7.0909 -3.7026 23 6 3.5828 1.4762 -0.0005 24 1 3.9499 1.6625 1.0087 25 6 4.1321 0.1461 -0.5199 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.7318 1.4616 -2.1708 32 1 0.6902 2.6138 -1.2704 33 1 2.9420 3.5272 -2.4590 34 1 2.5291 4.0943 -0.8120 35 1 4.7796 4.4325 -2.4110 36 1 7.4138 4.5923 -1.4057 37 1 7.4080 3.4689 -2.7864 38 1 5.1478 4.8336 -4.3491 39 1 6.1780 5.9577 -5.2673 40 1 6.6863 4.2666 -5.0419 41 1 6.7010 6.9655 -1.7221 42 1 6.1874 7.5338 -3.3286 43 1 5.1565 6.4098 -2.4105 44 1 7.7584 8.3431 -5.6036 45 1 3.7757 -0.0224 -1.5362 46 1 5.2217 0.1771 -0.5175 47 1 3.7904 -0.6644 0.1239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229841929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -45.817067 kcal Electronic energy + Delta-G solvation = -23456.006346 eV Core-core repulsion = 20252.185454 eV Total energy + Delta-G solvation = -3203.820892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31115 -38.20861 -36.23616 -34.16743 -33.16999 -31.31091 -30.81906 -29.63580 -25.83611 -25.69633 -25.58022 -24.87742 -23.18063 -22.75982 -19.93459 -19.05456 -18.68647 -17.89087 -16.07322 -15.86236 -15.44002 -15.08541 -14.74376 -14.47864 -14.25973 -13.84504 -13.39789 -13.27125 -12.91914 -12.78383 -12.71856 -12.29348 -12.17897 -12.14766 -11.87475 -11.61210 -11.36780 -11.30133 -11.16784 -10.84310 -10.81730 -10.72277 -10.66705 -10.44274 -10.34636 -10.17793 -9.62100 -9.59731 -9.26861 -8.76252 -8.59484 -8.37509 -8.05730 -5.99866 -4.09594 2.98205 3.30042 3.36851 3.41478 3.68463 4.24444 4.39240 4.44330 4.55736 4.64139 4.96031 5.08606 5.13445 5.15125 5.26925 5.31590 5.41493 5.49330 5.57235 5.59590 5.73363 5.76002 5.76656 5.86491 5.95747 6.06500 6.17595 6.22872 6.37615 6.40813 6.53787 6.60014 6.84529 6.85650 6.97562 7.06406 7.16073 7.39206 7.50001 7.58764 7.72289 8.03812 8.15372 8.41309 8.51153 8.90453 9.12194 9.56018 11.01639 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039533 B = 0.003450 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.101738 B = 8114.046191 C = 8502.305395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.097 4.097 4 H 0.083 0.917 5 C -0.124 4.124 6 C 0.098 3.902 7 N -0.639 5.639 8 C 0.716 3.284 9 O -0.596 6.596 10 N -0.732 5.732 11 C 0.151 3.849 12 C 0.056 3.944 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.159 3.841 24 H 0.069 0.931 25 C -0.163 4.163 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.393 0.607 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 -10.756 7.268 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.116 4.116 4 H 0.101 0.899 5 C -0.162 4.162 6 C -0.025 4.025 7 N -0.379 5.379 8 C 0.418 3.582 9 O -0.475 6.475 10 N -0.387 5.387 11 C 0.028 3.972 12 C 0.056 3.944 13 C -0.186 4.186 14 C -0.187 4.187 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.055 3.945 24 H 0.087 0.913 25 C -0.221 4.221 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.923 -10.998 7.475 19.988 hybrid contribution 0.559 0.625 -0.464 0.959 sum -14.364 -10.373 7.011 19.054 Atomic orbital electron populations 1.21797 0.95823 1.01522 1.01868 1.21615 0.95602 0.95395 1.02579 1.22313 0.93998 0.96912 0.98375 0.89899 1.22818 0.98095 0.97660 0.97673 1.22240 0.85137 0.95813 0.99332 1.47678 1.03876 1.35521 1.50788 1.15589 0.81214 0.81252 0.80137 1.90861 1.42450 1.56598 1.57553 1.45539 1.10791 1.33679 1.48650 1.21578 0.78617 0.98184 0.98860 1.18356 0.96062 0.89452 0.90571 1.21812 0.94844 1.01278 1.00714 1.21812 0.94893 1.02085 0.99898 1.20996 0.90939 1.15146 1.27229 0.92404 1.24879 0.97027 0.95988 0.95631 1.69807 1.30104 1.21322 1.31316 0.86571 0.85058 0.77499 0.78742 1.20727 1.21290 1.19894 1.21273 0.92988 0.86885 0.93369 0.91320 1.22229 1.03103 0.96022 1.00771 0.92569 0.92843 0.92829 0.91636 0.91167 0.90546 0.90067 0.90940 0.91685 0.77215 0.93016 0.93028 0.97693 0.89650 0.95475 0.95462 0.89642 0.97641 0.93049 0.92744 0.90963 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.76 37.16 0.36 -0.58 16 2 C -0.11 -0.84 4.14 -26.73 -0.11 -0.95 16 3 C -0.10 -0.85 2.91 -88.79 -0.26 -1.10 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.12 -1.06 5.69 -24.59 -0.14 -1.20 16 6 C 0.10 1.10 6.57 -2.53 -0.02 1.09 16 7 N -0.64 -9.41 3.08 -168.69 -0.52 -9.93 16 8 C 0.72 13.71 8.27 -86.92 -0.72 12.99 16 9 O -0.60 -13.48 15.25 5.29 0.08 -13.40 16 10 N -0.73 -14.03 4.92 -65.22 -0.32 -14.35 16 11 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 12 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 15 C -0.50 -13.43 8.01 -34.44 -0.28 -13.71 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.83 9.35 55.43 0.52 -23.31 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.16 1.97 3.43 -66.95 -0.23 1.74 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 C -0.16 -2.01 7.92 37.16 0.29 -1.72 16 26 H 0.06 0.34 7.49 -51.93 -0.39 -0.05 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.46 7.58 -51.93 -0.39 0.07 16 30 H 0.07 0.55 6.62 -51.93 -0.34 0.20 16 31 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 0.82 7.30 -51.93 -0.38 0.44 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 6.87 4.64 -40.82 -0.19 6.68 16 36 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.00 0.08 6.86 -51.92 -0.36 -0.27 16 39 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 43 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.05 0.66 7.57 -51.93 -0.39 0.27 16 46 H 0.07 1.14 6.77 -51.93 -0.35 0.78 16 47 H 0.06 0.61 6.65 -51.93 -0.35 0.27 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -29.40 352.44 -8.94 -38.34 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.31 Total: 3.95 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.68 Total: -2.52 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.32 Total: -47.59 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.40 -8.94 -38.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229841929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.477 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds