Wall clock time and date at job start Tue Mar 31 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 N 1.46897 * 109.47050 * 179.97438 * 3 2 1 5 5 C 1.46849 * 110.99923 * 51.77085 * 4 3 2 6 6 C 1.53037 * 109.52113 * 185.83608 * 5 4 3 7 7 C 1.53117 * 109.28267 * 300.82339 * 6 5 4 8 8 C 1.53121 * 109.15973 * 57.65412 * 7 6 5 9 9 C 1.46851 * 110.99975 * 175.97898 * 4 3 2 10 10 H 1.08987 * 109.46346 * 294.18139 * 9 4 3 11 11 C 1.50710 * 109.45802 * 54.14642 * 9 4 3 12 12 O 1.21273 * 119.99898 * 28.89028 * 11 9 4 13 13 N 1.34772 * 119.99662 * 208.88471 * 11 9 4 14 14 C 1.46501 * 119.99819 * 179.97438 * 13 11 9 15 15 C 1.52998 * 109.47202 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47315 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47102 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00417 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99809 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99735 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47337 * 59.99566 * 21 19 17 23 23 H 1.48501 * 109.46650 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47066 * 299.99238 * 21 19 17 25 25 H 1.09001 * 109.46803 * 59.99657 * 1 2 3 26 26 H 1.08998 * 109.46707 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47044 * 299.99850 * 1 2 3 28 28 H 1.08997 * 109.47044 * 240.00150 * 2 1 3 29 29 H 1.09001 * 109.47326 * 120.00293 * 2 1 3 30 30 H 1.08997 * 109.46991 * 60.00118 * 3 2 1 31 31 H 1.08993 * 109.46983 * 300.00179 * 3 2 1 32 32 H 1.08993 * 109.46446 * 305.85594 * 5 4 3 33 33 H 1.09004 * 109.45922 * 65.82379 * 5 4 3 34 34 H 1.09007 * 109.50278 * 180.88058 * 6 5 4 35 35 H 1.09002 * 109.53600 * 60.78442 * 6 5 4 36 36 H 1.09001 * 109.52235 * 297.75224 * 7 6 5 37 37 H 1.08999 * 109.57716 * 177.59068 * 7 6 5 38 38 H 1.08998 * 109.50316 * 182.40944 * 8 7 6 39 39 H 1.08990 * 109.50370 * 62.28789 * 8 7 6 40 40 H 0.96997 * 120.00104 * 0.02562 * 13 11 9 41 41 H 1.08998 * 109.47363 * 300.00593 * 14 13 11 42 42 H 1.08997 * 109.46913 * 60.00463 * 14 13 11 43 43 H 1.08998 * 109.47377 * 300.00500 * 15 14 13 44 44 H 1.09004 * 109.46646 * 60.00093 * 15 14 13 45 45 H 1.08998 * 109.47232 * 300.00498 * 16 15 14 46 46 H 1.08997 * 109.46931 * 60.00298 * 16 15 14 47 47 H 0.96998 * 120.00294 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0357 0.5939 -1.0760 6 6 5.5586 0.5015 -0.9557 7 6 6.1593 1.9068 -1.0478 8 6 5.5582 2.7836 0.0542 9 6 4.0354 2.8100 -0.0955 10 1 3.7730 3.2328 -1.0651 11 6 3.4378 3.6561 0.9993 12 8 3.1029 3.1444 2.0465 13 7 3.2759 4.9812 0.8144 14 6 2.6945 5.8035 1.8783 15 6 2.6218 7.2599 1.4152 16 6 2.0152 8.1188 2.5266 17 6 1.9430 9.5532 2.0702 18 1 2.2942 9.8250 1.0857 19 6 1.4286 10.5186 2.9094 20 7 1.0004 10.1877 4.1080 21 14 1.3385 12.2966 2.3434 22 1 0.4886 12.3870 1.1290 23 1 0.7498 13.1302 3.4222 24 1 2.7048 12.7858 2.0289 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6039 -0.4036 -0.9964 33 1 3.7733 1.0272 -2.0412 34 1 5.9507 -0.1157 -1.7641 35 1 5.8220 0.0553 0.0033 36 1 5.9296 2.3380 -2.0222 37 1 7.2403 1.8510 -0.9199 38 1 5.9500 3.7970 -0.0328 39 1 5.8210 2.3737 1.0293 40 1 3.5435 5.3903 -0.0234 41 1 1.6910 5.4449 2.1075 42 1 3.3169 5.7363 2.7706 43 1 3.6251 7.6188 1.1858 44 1 1.9991 7.3267 0.5230 45 1 1.0119 7.7601 2.7565 46 1 2.6382 8.0519 3.4185 47 1 0.6382 10.8668 4.6983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251622891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:53 Heat of formation + Delta-G solvation = -64.503696 kcal Electronic energy + Delta-G solvation = -22596.363813 eV Core-core repulsion = 19391.732607 eV Total energy + Delta-G solvation = -3204.631205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41387 -38.21954 -35.41175 -35.18401 -33.30704 -32.16191 -31.62167 -30.75811 -27.08234 -26.34705 -24.25261 -23.90111 -22.64682 -20.92760 -20.72395 -20.26490 -19.59624 -17.19333 -16.50069 -16.14962 -15.52516 -15.42047 -15.22868 -14.72531 -14.45091 -14.34602 -14.03713 -13.91629 -13.73683 -13.27260 -13.03252 -12.66107 -12.28194 -12.22865 -11.84725 -11.77557 -11.69041 -11.54113 -11.33442 -11.10599 -11.03740 -10.89523 -10.74687 -10.72411 -10.62869 -10.39643 -9.86823 -9.72286 -9.29693 -9.11598 -8.75872 -8.43765 -8.37744 -6.02354 -4.05685 2.76285 3.21249 3.31372 3.36231 3.38182 3.76433 4.43409 4.52320 4.55232 4.65695 4.81879 4.87555 4.90962 5.01135 5.05270 5.16879 5.25397 5.32523 5.33260 5.41518 5.49687 5.53791 5.63687 5.67381 5.70200 5.74237 5.77500 5.87022 5.89437 5.91137 6.05283 6.12108 6.14095 6.15747 6.49510 6.59135 6.78362 6.86974 6.92520 6.99837 7.62498 7.74043 7.75376 7.96212 8.36728 8.44473 9.00805 9.58474 11.08915 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.002957 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.876935 B = 9466.581445 C =10251.872429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.047 3.953 4 N -0.515 5.515 5 C 0.051 3.949 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.107 4.107 9 C 0.072 3.928 10 H 0.056 0.944 11 C 0.510 3.490 12 O -0.524 6.524 13 N -0.727 5.727 14 C 0.118 3.882 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 -20.596 -13.252 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.081 4.081 4 N -0.240 5.240 5 C -0.077 4.077 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.145 4.145 9 C -0.040 4.040 10 H 0.074 0.926 11 C 0.295 3.705 12 O -0.399 6.399 13 N -0.379 5.379 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.792 -21.077 -11.854 25.118 hybrid contribution -0.279 1.691 -1.434 2.235 sum 6.513 -19.386 -13.288 24.389 Atomic orbital electron populations 1.21735 0.95500 1.01633 1.02077 1.21602 0.95733 0.96222 1.02358 1.22340 0.86402 0.97707 1.01611 1.61717 1.07806 1.08558 1.45966 1.22232 0.95557 0.98106 0.91793 1.21618 0.94452 0.96999 1.02577 1.21574 1.00157 0.95518 0.98403 1.21533 0.91539 1.00646 1.00771 1.21607 0.96556 0.89479 0.96376 0.92614 1.20377 0.78851 0.82462 0.88833 1.90693 1.49242 1.72396 1.27593 1.46270 1.64084 1.07815 1.19715 1.21631 0.98113 0.91161 0.89604 1.21886 1.01051 0.91669 1.01237 1.19019 0.96069 0.93503 0.92732 1.21167 1.41393 0.92808 1.00841 0.92714 1.25028 0.95393 0.99071 0.94931 1.69949 1.41770 1.33879 1.07666 0.86642 0.78328 0.84675 0.78253 1.20251 1.21250 1.20233 0.92938 0.92586 0.92327 0.92103 0.90952 0.89053 0.95436 0.89785 0.95065 0.91508 0.90840 0.92107 0.91298 0.90895 0.90186 0.77002 0.91868 0.91762 0.92735 0.92807 0.96311 0.96269 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.17 5.43 -26.73 -0.15 -1.32 16 3 C 0.05 0.55 4.58 -3.82 -0.02 0.53 16 4 N -0.52 -5.99 4.36 -228.08 -0.99 -6.98 16 5 C 0.05 0.45 5.03 -3.83 -0.02 0.43 16 6 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 7 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 8 C -0.11 -1.07 5.36 -26.65 -0.14 -1.21 16 9 C 0.07 0.83 2.23 -68.87 -0.15 0.68 16 10 H 0.06 0.57 8.14 -51.94 -0.42 0.15 16 11 C 0.51 7.68 6.00 -10.98 -0.07 7.61 16 12 O -0.52 -9.97 15.14 5.56 0.08 -9.89 16 13 N -0.73 -10.49 5.56 -60.30 -0.33 -10.83 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 15 C -0.12 -2.35 5.27 -26.73 -0.14 -2.50 16 16 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 6.19 -51.93 -0.32 0.18 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.35 6.10 -51.93 -0.32 1.04 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.68 5.84 -51.93 -0.30 0.37 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.40 4.63 8.47 -40.82 -0.35 4.28 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -31.89 367.67 -10.06 -41.96 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.86 Total: -0.34 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.21 Total: -9.79 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.59 Total: -43.95 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.89 -10.06 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251622891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.547 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds