Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46975 * 2 1 4 4 N 1.46905 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.46852 * 111.00006 * 288.22894 * 4 3 2 6 6 C 1.53033 * 109.52159 * 174.16370 * 5 4 3 7 7 C 1.53118 * 109.27940 * 59.17615 * 6 5 4 8 8 C 1.53112 * 109.16396 * 302.34759 * 7 6 5 9 9 C 1.46851 * 110.99643 * 164.02038 * 4 3 2 10 10 H 1.08997 * 109.46204 * 65.83457 * 9 4 3 11 11 C 1.50700 * 109.46325 * 305.85482 * 9 4 3 12 12 O 1.21283 * 119.99794 * 330.94678 * 11 9 4 13 13 N 1.34773 * 119.99836 * 150.94184 * 11 9 4 14 14 C 1.46504 * 119.99947 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47090 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46979 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99490 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99655 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00289 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47051 * 270.00297 * 21 19 17 23 23 H 1.48500 * 109.47046 * 30.00112 * 21 19 17 24 24 H 1.48493 * 109.46896 * 150.00081 * 21 19 17 25 25 H 1.08999 * 109.46832 * 299.99861 * 1 2 3 26 26 H 1.08997 * 109.47286 * 59.99993 * 1 2 3 27 27 H 1.09000 * 109.47475 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46832 * 240.00139 * 2 1 3 29 29 H 1.08996 * 109.47017 * 120.00479 * 2 1 3 30 30 H 1.08999 * 109.47227 * 60.00381 * 3 2 1 31 31 H 1.08997 * 109.47119 * 300.00108 * 3 2 1 32 32 H 1.08999 * 109.46320 * 294.17717 * 5 4 3 33 33 H 1.09002 * 109.45773 * 54.14774 * 5 4 3 34 34 H 1.08999 * 109.50345 * 179.12270 * 6 5 4 35 35 H 1.09006 * 109.50345 * 299.24137 * 6 5 4 36 36 H 1.09004 * 109.52065 * 62.25272 * 7 6 5 37 37 H 1.09006 * 109.52608 * 182.37542 * 7 6 5 38 38 H 1.09001 * 109.50298 * 297.70810 * 8 7 6 39 39 H 1.09002 * 109.50329 * 177.59163 * 8 7 6 40 40 H 0.97000 * 120.00115 * 0.02562 * 13 11 9 41 41 H 1.08999 * 109.46654 * 60.00255 * 14 13 11 42 42 H 1.08994 * 109.47262 * 300.00226 * 14 13 11 43 43 H 1.09001 * 109.47061 * 60.00018 * 15 14 13 44 44 H 1.09003 * 109.46957 * 299.99894 * 15 14 13 45 45 H 1.08999 * 109.46825 * 59.99784 * 16 15 14 46 46 H 1.09005 * 109.47069 * 300.00199 * 16 15 14 47 47 H 0.96996 * 120.00247 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0358 1.0133 1.3013 6 6 5.5586 0.8855 1.2198 7 6 6.1591 2.2377 0.8257 8 6 5.5579 2.6847 -0.5096 9 6 4.0351 2.7605 -0.3781 10 1 3.7728 3.4894 0.3887 11 6 3.4375 3.1810 -1.6960 12 8 3.1054 2.3421 -2.5065 13 7 3.2721 4.4894 -1.9740 14 6 2.6917 4.8983 -3.2555 15 6 2.6157 6.4252 -3.3170 16 6 2.0090 6.8522 -4.6550 17 6 1.9336 8.3560 -4.7153 18 1 2.2831 8.9481 -3.8824 19 6 1.4174 8.9761 -5.8335 20 7 1.3521 10.2886 -5.8863 21 14 0.8123 7.9521 -7.2738 22 1 1.9313 7.7227 -8.2227 23 1 0.3096 6.6464 -6.7762 24 1 -0.2850 8.6733 -7.9673 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7734 1.7505 2.0601 33 1 3.6040 0.0486 1.5676 34 1 5.9508 0.5821 2.1904 35 1 5.8216 0.1385 0.4707 36 1 5.9294 2.9761 1.5939 37 1 7.2402 2.1409 0.7253 38 1 5.8209 1.9660 -1.2858 39 1 5.9496 3.6668 -0.7745 40 1 3.5381 5.1603 -1.3260 41 1 1.6895 4.4802 -3.3503 42 1 3.3164 4.5328 -4.0705 43 1 3.6181 6.8429 -3.2223 44 1 1.9911 6.7910 -2.5020 45 1 1.0066 6.4344 -4.7492 46 1 2.6332 6.4863 -5.4703 47 1 0.9894 10.7249 -6.6730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251622892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = -62.969680 kcal Electronic energy + Delta-G solvation = -22674.346357 eV Core-core repulsion = 19469.781671 eV Total energy + Delta-G solvation = -3204.564685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47205 -38.23467 -35.52546 -35.17134 -33.31734 -32.18404 -31.76140 -30.97423 -27.42744 -26.48079 -24.29728 -23.71912 -22.51629 -21.04403 -20.76952 -20.26423 -19.61692 -17.29164 -16.74596 -16.33314 -15.70577 -15.36030 -15.26033 -14.76554 -14.48920 -14.22082 -14.01830 -13.93323 -13.73723 -13.32623 -13.08363 -12.74635 -12.68732 -12.19511 -11.98223 -11.89977 -11.83059 -11.57967 -11.34346 -11.16830 -11.08510 -11.04349 -10.90680 -10.72251 -10.45737 -10.16394 -9.94650 -9.77106 -9.41324 -9.23865 -8.85163 -8.56680 -8.50835 -6.07573 -4.06347 2.69204 3.13719 3.30601 3.38192 3.42487 3.70618 4.43457 4.48258 4.52043 4.62381 4.79663 4.86647 4.91227 4.97126 5.03366 5.19424 5.23713 5.26568 5.29325 5.38809 5.43360 5.54269 5.55894 5.61715 5.64250 5.66320 5.70133 5.83325 5.85655 5.90213 6.00118 6.05986 6.09017 6.17390 6.34437 6.43048 6.67608 6.77892 6.80445 6.88311 7.21360 7.34819 7.64401 7.75612 8.35350 8.49120 8.96189 9.54718 11.05701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.003196 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.240955 B = 8758.198202 C = 9613.481507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.049 3.951 4 N -0.516 5.516 5 C 0.055 3.945 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.107 4.107 9 C 0.071 3.929 10 H 0.057 0.943 11 C 0.511 3.489 12 O -0.524 6.524 13 N -0.727 5.727 14 C 0.115 3.885 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.264 1.264 24 H -0.288 1.288 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.398 0.602 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -19.658 17.190 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.078 4.078 4 N -0.241 5.241 5 C -0.072 4.072 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.145 4.145 9 C -0.041 4.041 10 H 0.074 0.926 11 C 0.295 3.705 12 O -0.399 6.399 13 N -0.379 5.379 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.189 1.189 24 H -0.214 1.214 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.128 -20.450 16.114 26.747 hybrid contribution -0.517 0.670 0.090 0.851 sum 5.611 -19.780 16.204 26.178 Atomic orbital electron populations 1.21738 0.95721 1.01634 1.01854 1.21439 0.95202 0.96107 1.02414 1.22281 0.86373 0.98012 1.01146 1.61666 1.07858 1.25293 1.29309 1.22168 0.95613 1.00502 0.88956 1.21614 0.94379 0.97942 1.01706 1.21573 1.00190 0.97182 0.96715 1.21534 0.91500 1.02551 0.98901 1.21604 0.96601 0.91257 0.94605 0.92551 1.20384 0.78752 0.82632 0.88683 1.90706 1.49269 1.50982 1.48925 1.46237 1.64174 1.06942 1.20567 1.21639 0.98133 0.96981 0.83999 1.21703 1.01529 0.90805 1.01052 1.19501 0.95796 0.97534 0.92054 1.21097 1.41666 0.89618 1.03652 0.91024 1.25031 0.95201 0.94807 0.98432 1.69910 1.46347 1.08265 1.29690 0.86773 0.78871 0.80901 0.82758 1.20215 1.18895 1.21355 0.93050 0.92466 0.92594 0.90894 0.92435 0.95231 0.89815 0.94959 0.90196 0.91454 0.90839 0.92049 0.91259 0.90214 0.90863 0.76807 0.91879 0.91788 0.92111 0.92161 0.96339 0.96737 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.11 -1.14 5.98 -26.73 -0.16 -1.30 16 3 C 0.05 0.56 4.60 -3.82 -0.02 0.54 16 4 N -0.52 -5.76 4.21 -228.07 -0.96 -6.72 16 5 C 0.06 0.47 5.30 -3.83 -0.02 0.45 16 6 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 7 C -0.12 -0.89 6.00 -26.61 -0.16 -1.04 16 8 C -0.11 -1.02 5.36 -26.65 -0.14 -1.16 16 9 C 0.07 0.79 2.23 -68.87 -0.15 0.64 16 10 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 11 C 0.51 7.31 5.69 -10.99 -0.06 7.25 16 12 O -0.52 -9.52 15.38 5.55 0.09 -9.43 16 13 N -0.73 -9.91 5.56 -60.29 -0.33 -10.24 16 14 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 15 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 16 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 21 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.50 6.65 -51.93 -0.35 0.16 16 30 H 0.03 0.31 8.06 -51.93 -0.42 -0.11 16 31 H 0.08 1.18 5.68 -51.93 -0.30 0.88 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.63 6.50 -51.93 -0.34 0.29 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 4.39 8.47 -40.82 -0.35 4.04 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -32.25 365.31 -9.68 -41.92 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.86 Total: -0.54 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.22 Total: -10.59 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.52 Total: -43.95 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.25 -9.68 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251622892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.048 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds