Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47426 * 2 1 4 4 H 1.09002 * 109.47255 * 174.25149 * 3 2 1 5 5 C 1.50703 * 109.47339 * 54.24760 * 3 2 1 6 6 H 1.07994 * 120.00135 * 240.00081 * 5 3 2 7 7 C 1.37874 * 119.99621 * 60.00182 * 5 3 2 8 8 N 1.31511 * 120.00331 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99813 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47140 * 59.99623 * 9 7 5 11 11 H 1.48496 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47237 * 299.99590 * 9 7 5 13 13 N 1.46902 * 109.47384 * 294.24554 * 3 2 1 14 14 C 1.46896 * 111.00303 * 279.89499 * 13 3 2 15 15 C 1.53043 * 109.45724 * 271.93080 * 14 13 3 16 16 C 1.53200 * 109.31061 * 178.60136 * 15 14 13 17 17 N 1.46928 * 108.76529 * 54.65439 * 16 15 14 18 18 C 1.34773 * 120.62729 * 126.36301 * 17 16 15 19 19 O 1.21281 * 120.00111 * 185.28770 * 18 17 16 20 20 C 1.50698 * 120.00309 * 5.28924 * 18 17 16 21 21 C 1.52998 * 109.47395 * 153.73935 * 20 18 17 22 22 C 1.53006 * 109.47229 * 273.74056 * 20 18 17 23 23 C 1.46923 * 118.73996 * 306.38253 * 17 16 15 24 24 C 1.53042 * 109.46498 * 151.87671 * 14 13 3 25 25 H 1.08996 * 109.47027 * 177.76059 * 1 2 3 26 26 H 1.09005 * 109.46817 * 57.76183 * 1 2 3 27 27 H 1.08992 * 109.46972 * 297.76361 * 1 2 3 28 28 H 1.08995 * 109.47204 * 120.00448 * 2 1 3 29 29 H 1.09008 * 109.46997 * 239.99987 * 2 1 3 30 30 H 0.96999 * 120.00161 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99683 * 43.84524 * 13 3 2 32 32 H 1.09001 * 109.46101 * 31.90549 * 14 13 3 33 33 H 1.08996 * 109.50148 * 298.56578 * 15 14 13 34 34 H 1.08996 * 109.49874 * 58.66716 * 15 14 13 35 35 H 1.09001 * 109.59497 * 294.86831 * 16 15 14 36 36 H 1.09001 * 109.69988 * 174.50625 * 16 15 14 37 37 H 1.09000 * 109.47102 * 33.73973 * 20 18 17 38 38 H 1.08998 * 109.47165 * 184.99747 * 21 20 18 39 39 H 1.08999 * 109.47005 * 305.00446 * 21 20 18 40 40 H 1.09010 * 109.47028 * 65.00363 * 21 20 18 41 41 H 1.09000 * 109.46454 * 60.00064 * 22 20 18 42 42 H 1.08997 * 109.47047 * 179.97438 * 22 20 18 43 43 H 1.09000 * 109.47011 * 299.99973 * 22 20 18 44 44 H 1.09002 * 109.58786 * 293.82366 * 23 17 16 45 45 H 1.08995 * 109.70255 * 173.46321 * 23 17 16 46 46 H 1.09006 * 109.49349 * 301.33869 * 24 14 13 47 47 H 1.09006 * 109.49395 * 61.43030 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1252 1.4441 0.1029 5 6 1.4249 2.1928 1.1531 6 1 0.8176 3.0661 0.9665 7 6 1.6375 1.7644 2.4462 8 7 2.3766 0.7006 2.6734 9 14 0.8744 2.6940 3.8754 10 1 -0.6040 2.6912 3.7349 11 1 1.2510 2.0355 5.1519 12 1 1.3689 4.0943 3.8756 13 7 1.6671 2.0937 -1.2628 14 6 2.5903 1.7178 -2.3418 15 6 3.7786 2.6821 -2.3551 16 6 4.7563 2.2661 -3.4588 17 7 4.0271 2.1898 -4.7321 18 6 4.4609 2.8672 -5.8134 19 8 3.7999 2.8738 -6.8303 20 6 5.7673 3.6165 -5.7592 21 6 6.3500 3.7284 -7.1694 22 6 5.5284 5.0179 -5.1934 23 6 2.8158 1.3613 -4.8039 24 6 1.8601 1.7872 -3.6850 25 1 -0.3633 -1.0268 -0.0402 26 1 -0.3633 0.5482 -0.8693 27 1 -0.3633 0.4787 0.9093 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5139 -0.8901 30 1 2.5258 0.3990 3.5832 31 1 0.7132 1.8795 -1.5122 32 1 2.9488 0.7019 -2.1756 33 1 3.4234 3.6947 -2.5462 34 1 4.2844 2.6495 -1.3902 35 1 5.1813 1.2907 -3.2221 36 1 5.5553 3.0032 -3.5389 37 1 6.4672 3.0804 -5.1183 38 1 7.3356 4.1912 -7.1196 39 1 6.4373 2.7337 -7.6064 40 1 5.6922 4.3402 -7.7869 41 1 5.1133 4.9380 -4.1887 42 1 6.4734 5.5596 -5.1537 43 1 4.8284 5.5540 -5.8343 44 1 3.0827 0.3121 -4.6769 45 1 2.3320 1.5009 -5.7706 46 1 1.0001 1.1177 -3.6666 47 1 1.5231 2.8084 -3.8635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = -53.926678 kcal Electronic energy + Delta-G solvation = -23533.430559 eV Core-core repulsion = 20329.258008 eV Total energy + Delta-G solvation = -3204.172551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35211 -37.96885 -35.88653 -34.68787 -33.10703 -31.31202 -30.93802 -29.18763 -27.34478 -26.36459 -24.55888 -23.46264 -23.29124 -22.15799 -20.31751 -19.14218 -18.49444 -17.46388 -16.19479 -15.82755 -15.28571 -15.01972 -14.73967 -14.60760 -14.06444 -13.82581 -13.65145 -13.29015 -13.01286 -12.85834 -12.62966 -12.43771 -12.32764 -12.18775 -12.03161 -11.87790 -11.36018 -11.30766 -11.18130 -11.06395 -11.00940 -10.83578 -10.62253 -10.54978 -10.27184 -9.92330 -9.73523 -9.61512 -9.53586 -8.96605 -8.59202 -8.36255 -7.24627 -5.99689 -4.01223 2.62675 3.01022 3.32439 3.37071 3.40317 4.37643 4.42211 4.67862 4.84419 4.87528 4.98413 5.07104 5.17541 5.26649 5.32443 5.41996 5.43276 5.49834 5.57765 5.63918 5.68560 5.73389 5.80933 5.94582 5.98548 6.03393 6.04473 6.15160 6.23047 6.32489 6.34458 6.43898 6.54684 6.62339 6.70466 6.87765 7.26451 7.29106 7.43408 7.48203 7.68890 7.87332 8.18621 8.27156 8.51922 8.62850 9.04499 9.62759 11.07367 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.003795 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.307581 B = 7376.605277 C = 7909.202822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.088 3.912 15 C -0.119 4.119 16 C 0.103 3.897 17 N -0.607 5.607 18 C 0.519 3.481 19 O -0.549 6.549 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.144 4.144 23 C 0.114 3.886 24 C -0.135 4.135 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.010 0.990 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 2.537 -13.699 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.023 4.023 15 C -0.157 4.157 16 C -0.020 4.020 17 N -0.340 5.340 18 C 0.307 3.693 19 O -0.427 6.427 20 C -0.137 4.137 21 C -0.190 4.190 22 C -0.201 4.201 23 C -0.009 4.009 24 C -0.174 4.174 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.702 3.015 -13.919 15.741 hybrid contribution -0.681 -0.634 0.915 1.305 sum 6.021 2.381 -13.005 14.528 Atomic orbital electron populations 1.21556 0.97744 0.97898 1.01246 1.22118 0.94973 1.01375 1.00099 1.19206 0.95989 0.88459 0.85415 0.94843 1.21015 1.30593 1.11513 0.89812 0.92191 1.24893 0.95539 0.95142 0.98675 1.69868 1.39185 1.24035 1.20485 0.86651 0.79630 0.80036 0.81605 1.20420 1.21530 1.20353 1.60862 1.04619 1.62776 1.02940 1.21364 0.93921 0.96445 0.90533 1.21898 0.95905 1.00238 0.97702 1.21939 0.95019 1.02010 0.83022 1.48177 1.27333 1.47535 1.11003 1.20689 0.87375 0.78527 0.82666 1.90653 1.58060 1.62520 1.31496 1.21321 0.94884 0.97622 0.99900 1.21632 1.00341 1.02511 0.94524 1.21784 1.02634 0.94227 1.01487 1.21572 0.85322 0.93721 1.00271 1.22132 0.97956 1.02525 0.94747 0.95969 0.95231 0.91603 0.89042 0.97137 0.93082 0.85308 0.94280 0.91261 0.90152 0.91447 0.89651 0.89004 0.92033 0.92495 0.91654 0.91672 0.91388 0.91924 0.91747 0.89278 0.91174 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.38 37.16 0.35 -2.29 16 2 C -0.15 -3.29 5.46 -26.74 -0.15 -3.43 16 3 C 0.22 5.08 2.18 -68.87 -0.15 4.93 16 4 H 0.03 0.87 7.35 -51.93 -0.38 0.49 16 5 C -0.49 -12.82 7.37 -34.44 -0.25 -13.08 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.55 5.23 -17.82 -0.09 1.45 16 8 N -0.90 -24.62 11.38 55.43 0.63 -23.99 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.49 6.04 -100.91 -0.61 -14.09 16 14 C 0.09 1.44 2.23 -67.67 -0.15 1.29 16 15 C -0.12 -1.76 5.61 -26.61 -0.15 -1.91 16 16 C 0.10 1.21 6.00 -3.71 -0.02 1.19 16 17 N -0.61 -7.87 2.97 -172.77 -0.51 -8.38 16 18 C 0.52 7.00 6.79 -10.99 -0.07 6.93 16 19 O -0.55 -9.23 15.64 5.56 0.09 -9.14 16 20 C -0.12 -1.16 2.39 -91.77 -0.22 -1.38 16 21 C -0.13 -1.23 8.65 37.16 0.32 -0.91 16 22 C -0.14 -1.31 8.95 37.16 0.33 -0.98 16 23 C 0.11 1.51 6.44 -3.71 -0.02 1.48 16 24 C -0.13 -1.91 5.33 -26.61 -0.14 -2.05 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 27 H 0.06 1.51 7.09 -51.93 -0.37 1.14 16 28 H 0.09 2.34 6.25 -51.93 -0.32 2.01 16 29 H 0.01 0.21 7.04 -51.92 -0.37 -0.15 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.33 6.35 6.22 -39.29 -0.24 6.11 16 32 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.31 7.59 -51.93 -0.39 0.92 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.82 4.86 -51.93 -0.25 0.57 16 37 H 0.09 0.77 6.68 -51.93 -0.35 0.42 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.03 -51.92 -0.42 0.26 16 41 H 0.06 0.62 7.20 -51.93 -0.37 0.25 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 46 H 0.07 0.95 8.10 -51.93 -0.42 0.52 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -28.76 354.85 -8.79 -37.54 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.29 Total: 5.55 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.42 Total: -8.75 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.49 Total: -46.47 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.76 -8.79 -37.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.382 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds