Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 H 1.09002 * 109.47298 * 53.87540 * 3 2 1 5 5 C 1.50700 * 109.47194 * 173.87613 * 3 2 1 6 6 H 1.08000 * 120.00119 * 120.00336 * 5 3 2 7 7 C 1.37875 * 120.00102 * 299.99849 * 5 3 2 8 8 N 1.31518 * 120.00232 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99941 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47263 * 89.99726 * 9 7 5 11 11 H 1.48497 * 109.46946 * 209.99809 * 9 7 5 12 12 H 1.48495 * 109.46837 * 329.99691 * 9 7 5 13 13 N 1.46896 * 109.47175 * 293.87881 * 3 2 1 14 14 C 1.46905 * 111.00336 * 151.38400 * 13 3 2 15 15 C 1.53040 * 109.46157 * 278.59630 * 14 13 3 16 16 C 1.53190 * 109.31391 * 178.61142 * 15 14 13 17 17 N 1.46924 * 108.77468 * 54.63357 * 16 15 14 18 18 C 1.34781 * 120.63205 * 126.36934 * 17 16 15 19 19 O 1.21280 * 119.99856 * 175.17432 * 18 17 16 20 20 C 1.50696 * 119.99502 * 355.17284 * 18 17 16 21 21 C 1.53008 * 109.46877 * 156.02425 * 20 18 17 22 22 C 1.52999 * 109.47195 * 276.01942 * 20 18 17 23 23 C 1.46934 * 118.73927 * 306.39278 * 17 16 15 24 24 C 1.53041 * 109.46173 * 158.52589 * 14 13 3 25 25 H 1.08998 * 109.46896 * 185.68499 * 1 2 3 26 26 H 1.08995 * 109.47024 * 305.69026 * 1 2 3 27 27 H 1.09003 * 109.47041 * 65.68899 * 1 2 3 28 28 H 1.09001 * 109.47386 * 239.99552 * 2 1 3 29 29 H 1.09006 * 109.46824 * 119.99854 * 2 1 3 30 30 H 0.96995 * 120.00150 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00002 * 27.42871 * 13 3 2 32 32 H 1.08996 * 109.45570 * 38.55327 * 14 13 3 33 33 H 1.08999 * 109.49289 * 298.56820 * 15 14 13 34 34 H 1.08997 * 109.49523 * 58.65819 * 15 14 13 35 35 H 1.09000 * 109.58351 * 294.85096 * 16 15 14 36 36 H 1.08995 * 109.58630 * 174.42279 * 16 15 14 37 37 H 1.08994 * 109.47357 * 36.02266 * 20 18 17 38 38 H 1.08994 * 109.47257 * 59.99780 * 21 20 18 39 39 H 1.08997 * 109.47032 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.46474 * 299.99780 * 21 20 18 41 41 H 1.08996 * 109.47152 * 304.95446 * 22 20 18 42 42 H 1.09000 * 109.46956 * 64.95497 * 22 20 18 43 43 H 1.09002 * 109.47129 * 184.95505 * 22 20 18 44 44 H 1.08998 * 109.58293 * 293.81890 * 23 17 16 45 45 H 1.09000 * 109.70129 * 173.46206 * 23 17 16 46 46 H 1.09009 * 109.49362 * 301.33905 * 24 14 13 47 47 H 1.09000 * 109.49716 * 61.40332 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5900 1.9870 0.8301 5 6 3.5394 1.4451 0.1516 6 1 4.1590 1.8847 -0.6161 7 6 4.1202 0.8865 1.2703 8 7 5.4287 0.8893 1.4028 9 14 3.0486 0.1257 2.5979 10 1 2.8334 -1.3123 2.2965 11 1 3.7217 0.2602 3.9147 12 1 1.7390 0.8245 2.6377 13 7 1.6747 2.0910 -1.2664 14 6 1.5090 3.5396 -1.0875 15 6 0.1182 3.8272 -0.5174 16 6 -0.0382 5.3355 -0.2997 17 7 0.2513 6.0281 -1.5627 18 6 -0.6345 6.8978 -2.0877 19 8 -0.3479 7.5285 -3.0832 20 6 -1.9808 7.0865 -1.4376 21 6 -2.5355 8.4646 -1.8041 22 6 -2.9416 6.0026 -1.9306 23 6 1.5246 5.7542 -2.2429 24 6 1.6634 4.2413 -2.4388 25 1 -0.3633 -1.0226 0.1018 26 1 -0.3633 0.5995 0.8346 27 1 -0.3633 0.4231 -0.9366 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 5.8373 0.4960 2.1897 31 1 0.8416 1.6773 -1.6573 32 1 2.2676 3.9093 -0.3976 33 1 -0.6411 3.4800 -1.2182 34 1 0.0005 3.3082 0.4338 35 1 0.6604 5.6682 0.4680 36 1 -1.0591 5.5557 0.0121 37 1 -1.8752 7.0135 -0.3553 38 1 -2.6411 8.5377 -2.8865 39 1 -3.5095 8.6010 -1.3343 40 1 -1.8509 9.2368 -1.4529 41 1 -2.9795 6.0187 -3.0197 42 1 -2.5921 5.0267 -1.5935 43 1 -3.9376 6.1902 -1.5295 44 1 2.3505 6.1212 -1.6336 45 1 1.5372 6.2509 -3.2130 46 1 2.6456 4.0169 -2.8551 47 1 0.8899 3.8898 -3.1216 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -46.017945 kcal Electronic energy + Delta-G solvation = -23712.438329 eV Core-core repulsion = 20508.608726 eV Total energy + Delta-G solvation = -3203.829603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38469 -38.08480 -36.01603 -34.72075 -33.10341 -31.94882 -30.95559 -29.58993 -27.39553 -27.08303 -24.74005 -23.42499 -22.70640 -22.14319 -20.25297 -19.89583 -18.58793 -17.55029 -16.73664 -15.88686 -15.42769 -15.24997 -14.70233 -14.47573 -14.29330 -14.07208 -13.64366 -13.50019 -13.27867 -12.94821 -12.71787 -12.62697 -12.36621 -12.30654 -12.17461 -12.06095 -11.84491 -11.43073 -11.38606 -11.20347 -11.09513 -11.07511 -10.70178 -10.63144 -10.32502 -10.09871 -10.00458 -9.64416 -9.43964 -9.23224 -8.62027 -8.54726 -7.39845 -6.06329 -4.03274 2.60600 2.99674 3.22239 3.31224 3.34889 4.34087 4.37311 4.62616 4.73917 4.79617 4.85222 5.10838 5.12327 5.17224 5.21140 5.38137 5.41741 5.47488 5.50332 5.59616 5.63023 5.67854 5.69566 5.76034 5.77152 5.88002 5.89532 5.92613 6.00643 6.03683 6.08170 6.19034 6.34708 6.40410 6.55848 6.56932 6.63756 6.72535 6.79454 7.14217 7.41669 7.70145 7.94175 8.17021 8.23706 8.73458 9.06872 9.56665 11.07159 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025098 B = 0.004251 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.378602 B = 6584.492621 C = 6945.571067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.496 4.496 6 H 0.081 0.919 7 C 0.066 3.934 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.095 3.905 15 C -0.165 4.165 16 C 0.108 3.892 17 N -0.607 5.607 18 C 0.518 3.482 19 O -0.548 6.548 20 C -0.117 4.117 21 C -0.134 4.134 22 C -0.141 4.141 23 C 0.111 3.889 24 C -0.119 4.119 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.263 0.737 31 H 0.319 0.681 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 8.947 -2.964 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.082 3.918 4 H 0.021 0.979 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.297 5.297 14 C -0.016 4.016 15 C -0.206 4.206 16 C -0.016 4.016 17 N -0.340 5.340 18 C 0.306 3.694 19 O -0.425 6.425 20 C -0.139 4.139 21 C -0.191 4.191 22 C -0.199 4.199 23 C -0.012 4.012 24 C -0.157 4.157 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.478 9.256 -3.594 18.389 hybrid contribution -1.273 -0.715 1.497 2.092 sum -16.752 8.541 -2.097 18.920 Atomic orbital electron populations 1.21913 0.98224 1.00558 1.00628 1.22160 0.92907 1.00669 1.01852 1.19633 0.96830 0.89083 0.86248 0.97945 1.21059 0.89265 1.37507 1.05575 0.90125 1.24969 0.94730 0.96014 0.97768 1.69885 1.09183 1.45908 1.28989 0.86958 0.80761 0.79796 0.81257 1.20647 1.22540 1.19377 1.60600 1.38621 1.01158 1.29356 1.21487 0.94232 0.90020 0.95908 1.22748 1.00380 0.95112 1.02310 1.21799 1.01620 0.92716 0.85423 1.48190 1.18998 1.42729 1.24102 1.20646 0.85808 0.78673 0.84250 1.90661 1.78558 1.46857 1.26452 1.21331 0.92965 0.98238 1.01327 1.21641 1.00317 0.94370 1.02792 1.21740 0.98532 0.97514 1.02081 1.21678 0.84449 0.96586 0.98461 1.21887 1.03073 0.92835 0.97942 0.93655 0.93621 0.93225 0.91386 0.92804 0.92735 0.86324 0.89455 0.91942 0.90677 0.90958 0.89929 0.89024 0.91537 0.92080 0.92441 0.91982 0.91978 0.91431 0.91328 0.89286 0.89724 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.67 37.16 0.36 -2.14 16 2 C -0.14 -2.81 4.97 -26.73 -0.13 -2.94 16 3 C 0.19 4.17 1.39 -68.87 -0.10 4.08 16 4 H 0.00 0.07 5.91 -51.93 -0.31 -0.24 16 5 C -0.50 -13.47 9.25 -34.44 -0.32 -13.79 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 1.86 5.45 -17.82 -0.10 1.77 16 8 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 9 Si 0.88 21.27 24.42 -169.99 -4.15 17.12 16 10 H -0.28 -6.61 6.82 56.52 0.39 -6.23 16 11 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 13 N -0.67 -12.50 6.04 -100.91 -0.61 -13.11 16 14 C 0.09 1.53 2.25 -67.67 -0.15 1.38 16 15 C -0.17 -2.16 5.32 -26.61 -0.14 -2.30 16 16 C 0.11 1.21 6.20 -3.71 -0.02 1.19 16 17 N -0.61 -7.76 2.97 -172.77 -0.51 -8.27 16 18 C 0.52 6.88 6.81 -10.99 -0.07 6.80 16 19 O -0.55 -9.14 15.52 5.56 0.09 -9.05 16 20 C -0.12 -1.14 2.41 -91.77 -0.22 -1.36 16 21 C -0.13 -1.22 8.71 37.16 0.32 -0.90 16 22 C -0.14 -1.20 9.08 37.16 0.34 -0.86 16 23 C 0.11 1.51 6.41 -3.71 -0.02 1.49 16 24 C -0.12 -1.72 5.69 -26.61 -0.15 -1.88 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.70 6.68 -51.93 -0.35 0.35 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.05 1.19 3.21 -51.93 -0.17 1.03 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.32 5.34 6.41 -39.29 -0.25 5.09 16 32 H 0.09 1.65 7.80 -51.93 -0.41 1.24 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.04 7.20 -51.93 -0.37 0.66 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.73 5.11 -51.93 -0.27 0.47 16 37 H 0.09 0.74 6.32 -51.93 -0.33 0.41 16 38 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.53 7.74 -51.93 -0.40 0.13 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.27 7.04 -51.93 -0.37 0.91 16 46 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -31.04 352.36 -7.82 -38.86 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.30 Total: 5.00 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.41 Total: -9.45 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.35 Total: -47.79 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.15 Total: 17.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.04 -7.82 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.155 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds