Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52994 * 109.47025 * 2 1 4 4 H 1.08999 * 109.47240 * 304.24587 * 3 2 1 5 5 C 1.50700 * 109.47008 * 184.24753 * 3 2 1 6 6 H 1.08000 * 120.00130 * 239.99481 * 5 3 2 7 7 C 1.37876 * 120.00052 * 60.00001 * 5 3 2 8 8 N 1.31515 * 119.99995 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00242 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46959 * 89.99734 * 9 7 5 11 11 H 1.48493 * 109.47301 * 209.99921 * 9 7 5 12 12 H 1.48496 * 109.46930 * 330.00237 * 9 7 5 13 13 N 1.46905 * 109.47317 * 64.24753 * 3 2 1 14 14 C 1.46895 * 110.99917 * 205.86739 * 13 3 2 15 15 C 1.52996 * 109.47227 * 174.81783 * 14 13 3 16 16 C 1.50699 * 109.47724 * 180.02562 * 15 14 13 17 17 O 1.21289 * 119.99495 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00428 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99918 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47064 * 274.99451 * 19 18 16 21 21 C 1.52998 * 109.47201 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47179 * 60.00004 * 21 20 19 23 23 C 1.52998 * 109.47050 * 300.00088 * 22 21 20 24 24 C 1.52999 * 109.46807 * 154.99577 * 19 18 16 25 25 H 1.08994 * 109.47090 * 54.89844 * 1 2 3 26 26 H 1.09001 * 109.46898 * 174.89885 * 1 2 3 27 27 H 1.09004 * 109.46729 * 294.90022 * 1 2 3 28 28 H 1.08999 * 109.46866 * 239.99620 * 2 1 3 29 29 H 1.09002 * 109.46895 * 120.00039 * 2 1 3 30 30 H 0.97003 * 120.00356 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99709 * 81.91678 * 13 3 2 32 32 H 1.09003 * 109.47048 * 54.82340 * 14 13 3 33 33 H 1.09003 * 109.47797 * 294.81863 * 14 13 3 34 34 H 1.09000 * 109.47031 * 59.99960 * 15 14 13 35 35 H 1.08998 * 109.47487 * 300.00525 * 15 14 13 36 36 H 0.96996 * 120.00172 * 359.97438 * 18 16 15 37 37 H 1.08995 * 109.47251 * 34.99951 * 19 18 16 38 38 H 1.09009 * 109.46964 * 300.00439 * 20 19 18 39 39 H 1.08997 * 109.47142 * 59.99787 * 20 19 18 40 40 H 1.08996 * 109.47108 * 299.99929 * 21 20 19 41 41 H 1.09001 * 109.46834 * 179.97438 * 21 20 19 42 42 H 1.08996 * 109.47516 * 180.02562 * 22 21 20 43 43 H 1.09009 * 109.46916 * 59.99725 * 22 21 20 44 44 H 1.08995 * 109.47494 * 299.99696 * 23 22 21 45 45 H 1.09005 * 109.47261 * 179.97438 * 23 22 21 46 46 H 1.08995 * 109.47604 * 299.99700 * 24 19 18 47 47 H 1.09005 * 109.47389 * 60.00062 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5434 1.4438 -0.1052 6 1 4.1390 1.8918 0.6763 7 6 4.1584 0.8730 -1.1993 8 7 3.4330 0.3280 -2.1514 9 14 6.0218 0.8752 -1.3302 10 1 6.5639 -0.3534 -0.6964 11 1 6.4175 0.9101 -2.7610 12 1 6.5652 2.0708 -0.6370 13 7 1.6359 2.1048 1.2475 14 6 1.5393 3.5590 1.0640 15 6 0.9936 4.1991 2.3419 16 6 0.8939 5.6910 2.1536 17 8 1.2270 6.1929 1.1009 18 7 0.4355 6.4676 3.1552 19 6 0.3380 7.9178 2.9718 20 6 1.6890 8.5635 3.2862 21 6 1.5871 10.0781 3.0953 22 6 0.5213 10.6404 4.0381 23 6 -0.8296 9.9947 3.7237 24 6 -0.7278 8.4805 3.9142 25 1 -0.3633 0.5909 -0.8407 26 1 -0.3633 -1.0236 -0.0914 27 1 -0.3633 0.4327 0.9322 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8656 -0.0739 -2.9210 31 1 2.2688 1.8764 1.9995 32 1 0.8679 3.7766 0.2333 33 1 2.5278 3.9645 0.8480 34 1 1.6650 3.9815 3.1726 35 1 0.0052 3.7937 2.5580 36 1 0.1694 6.0663 3.9972 37 1 0.0624 8.1359 1.9401 38 1 1.9646 8.3454 4.3180 39 1 2.4483 8.1626 2.6148 40 1 1.3113 10.2965 2.0637 41 1 2.5494 10.5381 3.3197 42 1 0.4484 11.7194 3.9018 43 1 0.7971 10.4219 5.0698 44 1 -1.1055 10.2132 2.6921 45 1 -1.5889 10.3950 4.3957 46 1 -1.6903 8.0205 3.6903 47 1 -0.4522 8.2624 4.9461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -77.664056 kcal Electronic energy + Delta-G solvation = -22397.449169 eV Core-core repulsion = 19192.247287 eV Total energy + Delta-G solvation = -3205.201881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.00516 -38.16677 -36.17084 -34.17005 -33.05529 -31.43773 -31.04377 -30.06872 -28.62853 -26.01606 -23.42217 -22.92219 -22.48681 -21.37306 -20.39742 -19.84551 -19.34194 -16.87018 -16.69339 -16.39466 -15.41744 -15.11653 -14.74112 -14.49045 -14.36170 -13.87580 -13.83042 -13.40749 -13.08694 -12.93343 -12.79365 -12.52364 -12.42017 -11.95100 -11.52023 -11.43669 -11.43242 -11.22444 -11.05970 -10.95884 -10.89532 -10.72472 -10.70814 -10.50085 -10.47619 -10.07055 -9.66423 -9.55694 -9.38010 -9.03232 -8.99937 -8.33660 -7.22763 -5.95221 -4.07690 2.85210 3.19656 3.30391 3.37386 3.40670 4.39788 4.43762 4.46704 4.62537 4.86308 4.95651 4.99392 5.16663 5.21629 5.24806 5.29109 5.34262 5.38883 5.48609 5.52364 5.72573 5.77822 5.82190 5.82941 5.92678 5.95481 6.04050 6.11172 6.17339 6.41858 6.50796 6.53542 6.59809 6.74486 6.82314 7.18532 7.20969 7.47688 7.56325 7.63333 7.81794 8.12146 8.19280 8.35200 8.41455 8.70020 9.04286 9.59552 11.05282 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.003105 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.314114 B = 9015.133751 C = 9929.881397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.082 3.918 15 C -0.136 4.136 16 C 0.514 3.486 17 O -0.535 6.535 18 N -0.736 5.736 19 C 0.145 3.855 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.325 0.675 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 16.150 14.497 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.320 5.320 14 C -0.048 4.048 15 C -0.176 4.176 16 C 0.301 3.699 17 O -0.410 6.410 18 N -0.388 5.388 19 C 0.040 3.960 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.802 16.299 13.403 22.864 hybrid contribution 1.946 0.022 0.272 1.965 sum -6.855 16.321 13.675 22.369 Atomic orbital electron populations 1.21691 0.99027 0.98230 1.00364 1.21500 0.92058 0.99216 1.01662 1.19142 0.92747 0.91086 0.86273 0.94937 1.21856 0.92707 1.37868 1.05892 0.92904 1.24930 0.97984 0.95038 0.95612 1.69878 1.34860 1.38107 1.09538 0.86647 0.86111 0.78316 0.77235 1.20675 1.21188 1.20069 1.60899 1.55125 1.06000 1.10000 1.21453 0.99673 0.89396 0.94292 1.21682 1.03965 0.90119 1.01861 1.20989 0.75884 0.89757 0.83240 1.90714 1.47629 1.75826 1.26855 1.46160 1.68105 1.07134 1.17387 1.20920 0.94855 0.79621 1.00602 1.21928 0.97777 0.95275 1.01894 1.21500 0.98924 0.95143 1.00010 1.21573 0.94946 0.99665 0.99669 1.21475 0.97433 0.94407 1.02099 1.21795 0.98769 0.96229 0.99581 0.94444 0.95698 0.93521 0.89182 0.95107 0.92902 0.85930 0.91503 0.94722 0.89519 0.88653 0.76844 0.89592 0.91969 0.91264 0.91703 0.91814 0.91962 0.91983 0.91646 0.91639 0.91322 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.73 37.16 0.36 -2.47 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.45 1.98 -68.86 -0.14 5.31 16 4 H 0.03 0.93 7.70 -51.93 -0.40 0.53 16 5 C -0.54 -15.02 8.47 -34.44 -0.29 -15.31 16 6 H 0.05 1.45 7.73 -52.49 -0.41 1.04 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -25.58 11.30 55.43 0.63 -24.95 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.69 -14.52 5.73 -107.96 -0.62 -15.14 16 14 C 0.08 1.62 4.80 -3.83 -0.02 1.60 16 15 C -0.14 -1.95 6.00 -27.89 -0.17 -2.12 16 16 C 0.51 7.64 7.79 -10.99 -0.09 7.55 16 17 O -0.53 -10.35 15.65 5.55 0.09 -10.26 16 18 N -0.74 -7.88 5.08 -53.81 -0.27 -8.16 16 19 C 0.14 1.47 2.45 -67.93 -0.17 1.31 16 20 C -0.13 -1.31 5.49 -26.73 -0.15 -1.45 16 21 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 22 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 23 C -0.12 -0.78 5.92 -26.75 -0.16 -0.93 16 24 C -0.13 -0.92 5.39 -26.75 -0.14 -1.06 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.91 7.88 -51.93 -0.41 0.50 16 28 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.33 6.60 8.45 -39.29 -0.33 6.27 16 32 H 0.07 1.43 7.88 -51.93 -0.41 1.02 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 3.09 8.60 -40.82 -0.35 2.74 16 37 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -30.93 369.54 -10.05 -40.98 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.91 Total: 5.97 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -1.51 Total: -10.63 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.27 Total: -48.25 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.93 -10.05 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.684 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds