Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 H 1.08993 * 109.47638 * 179.61035 * 3 2 1 5 5 C 1.50699 * 109.47467 * 299.61610 * 3 2 1 6 6 H 1.07998 * 120.00793 * 119.99183 * 5 3 2 7 7 C 1.37881 * 119.99636 * 299.99498 * 5 3 2 8 8 N 1.31518 * 119.99999 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46919 * 90.00467 * 9 7 5 11 11 H 1.48499 * 109.47126 * 210.00148 * 9 7 5 12 12 H 1.48497 * 109.47333 * 330.00220 * 9 7 5 13 13 N 1.46901 * 109.46816 * 59.61293 * 3 2 1 14 14 C 1.46899 * 111.00406 * 86.27609 * 13 3 2 15 15 C 1.52993 * 109.47308 * 184.95724 * 14 13 3 16 16 C 1.50705 * 109.47161 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99675 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00056 * 180.02562 * 16 15 14 19 19 C 1.46497 * 119.99709 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47066 * 274.99340 * 19 18 16 21 21 C 1.53008 * 109.47144 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.46914 * 60.00486 * 21 20 19 23 23 C 1.53006 * 109.46959 * 299.99770 * 22 21 20 24 24 C 1.52992 * 109.46895 * 60.00284 * 23 22 21 25 25 H 1.08996 * 109.47586 * 55.92095 * 1 2 3 26 26 H 1.09002 * 109.46910 * 175.91764 * 1 2 3 27 27 H 1.08997 * 109.47167 * 295.91295 * 1 2 3 28 28 H 1.09002 * 109.47615 * 240.00133 * 2 1 3 29 29 H 1.08994 * 109.47446 * 120.00213 * 2 1 3 30 30 H 0.97002 * 120.00205 * 180.02562 * 8 7 5 31 31 H 1.00907 * 111.00155 * 210.23838 * 13 3 2 32 32 H 1.08998 * 109.47243 * 304.96436 * 14 13 3 33 33 H 1.09004 * 109.46538 * 64.96261 * 14 13 3 34 34 H 1.09007 * 109.47458 * 299.99932 * 15 14 13 35 35 H 1.09000 * 109.47157 * 60.00324 * 15 14 13 36 36 H 0.96999 * 120.00474 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.47723 * 34.99915 * 19 18 16 38 38 H 1.08996 * 109.47501 * 300.00093 * 20 19 18 39 39 H 1.09004 * 109.46926 * 60.00455 * 20 19 18 40 40 H 1.08996 * 109.46935 * 300.00362 * 21 20 19 41 41 H 1.08994 * 109.47087 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.46936 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46917 * 59.99642 * 22 21 20 44 44 H 1.08991 * 109.47269 * 299.99949 * 23 22 21 45 45 H 1.08997 * 109.46679 * 180.02562 * 23 22 21 46 46 H 1.09007 * 109.47120 * 180.02562 * 24 23 22 47 47 H 1.09000 * 109.47814 * 60.00241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0070 5 6 1.5455 2.1502 -1.2352 6 1 0.9239 3.0285 -1.1421 7 6 1.8866 1.6764 -2.4843 8 7 2.6431 0.6066 -2.5977 9 14 1.2731 2.5532 -4.0154 10 1 2.2534 3.5943 -4.4158 11 1 1.1154 1.5714 -5.1183 12 1 -0.0371 3.1908 -3.7292 13 7 1.5426 2.1376 1.1948 14 6 2.4352 1.9191 2.3408 15 6 1.8233 2.5525 3.5919 16 6 2.7393 2.3288 4.7675 17 8 3.7789 1.7221 4.6193 18 7 2.4027 2.8021 5.9837 19 6 3.2935 2.5851 7.1263 20 6 3.0076 1.2143 7.7427 21 6 3.9375 0.9879 8.9365 22 6 3.6980 2.0777 9.9834 23 6 3.9838 3.4486 9.3670 24 6 3.0540 3.6749 8.1733 25 1 -0.3634 0.5758 -0.8511 26 1 -0.3633 -1.0251 -0.0732 27 1 -0.3633 0.4491 0.9243 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.8834 0.2734 -3.4765 31 1 1.4195 3.1229 1.0149 32 1 2.5648 0.8489 2.5016 33 1 3.4040 2.3761 2.1390 34 1 1.6939 3.6228 3.4311 35 1 0.8545 2.0955 3.7937 36 1 1.5710 3.2870 6.1023 37 1 4.3301 2.6240 6.7916 38 1 1.9711 1.1754 8.0776 39 1 3.1779 0.4379 6.9968 40 1 4.9742 1.0269 8.6020 41 1 3.7342 0.0112 9.3753 42 1 4.3607 1.9167 10.8336 43 1 2.6613 2.0387 10.3177 44 1 5.0204 3.4876 9.0326 45 1 3.8136 4.2249 10.1129 46 1 3.2579 4.6514 7.7338 47 1 2.0173 3.6360 8.5076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -74.712140 kcal Electronic energy + Delta-G solvation = -22385.401061 eV Core-core repulsion = 19180.327184 eV Total energy + Delta-G solvation = -3205.073877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05288 -38.20926 -36.26207 -34.21416 -33.16232 -31.20546 -31.06739 -29.98517 -28.61421 -25.92818 -23.40041 -23.00470 -22.86588 -21.67748 -20.43638 -19.79604 -18.96339 -16.92425 -16.52468 -16.24016 -15.57292 -15.17701 -14.79029 -14.51007 -14.34814 -14.03800 -13.78580 -13.44901 -13.11749 -12.96783 -12.67777 -12.52807 -12.43965 -12.03327 -11.78215 -11.54057 -11.46198 -11.29688 -10.97720 -10.92465 -10.81839 -10.74920 -10.63657 -10.50609 -10.32521 -9.99196 -9.74098 -9.54992 -9.31325 -9.06946 -8.72626 -8.43070 -7.19537 -5.97846 -4.03695 2.79474 3.15226 3.31193 3.38202 3.41196 4.37026 4.42629 4.44181 4.60016 4.83431 4.92129 4.95819 5.14008 5.18982 5.21798 5.30855 5.31783 5.33935 5.45306 5.46781 5.70090 5.75360 5.78015 5.80199 5.87552 5.92743 5.96757 6.07221 6.14182 6.44806 6.46262 6.58566 6.65904 6.74056 6.90707 7.29406 7.38319 7.50688 7.55355 7.78826 7.82986 7.90441 8.31602 8.33792 8.43397 8.71755 9.06018 9.60813 11.08077 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040258 B = 0.002670 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.349089 B =10483.561248 C =10702.420534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.688 5.688 14 C 0.076 3.924 15 C -0.135 4.135 16 C 0.515 3.485 17 O -0.537 6.537 18 N -0.735 5.735 19 C 0.145 3.855 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.010 0.990 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.398 0.602 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 5.191 23.583 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.319 5.319 14 C -0.054 4.054 15 C -0.176 4.176 16 C 0.302 3.698 17 O -0.413 6.413 18 N -0.387 5.387 19 C 0.040 3.960 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.427 4.106 23.472 23.833 hybrid contribution 0.027 1.191 -1.029 1.574 sum -0.400 5.297 22.444 23.064 Atomic orbital electron populations 1.21442 0.97575 0.97344 1.01240 1.21433 0.94943 0.98312 0.99514 1.19108 0.93060 0.91443 0.85504 0.98111 1.21191 1.31607 1.11934 0.90373 0.92316 1.24902 0.95100 0.95010 0.98933 1.69896 1.36585 1.22637 1.23568 0.86575 0.79169 0.79311 0.82804 1.20855 1.21260 1.19880 1.60685 1.49003 1.15778 1.06397 1.21576 0.93751 1.00573 0.89506 1.21665 0.99474 1.03039 0.93386 1.20982 0.86995 0.77847 0.83981 1.90702 1.25559 1.40269 1.84757 1.46160 1.24830 1.59223 1.08500 1.20929 0.95435 0.94341 0.85300 1.21928 0.99720 0.97540 0.97670 1.21500 1.00037 0.98560 0.95477 1.21573 1.01657 0.94665 0.97969 1.21479 0.99749 0.97296 0.96888 1.21805 1.00482 0.98418 0.95688 0.92543 0.96830 0.94030 0.89539 0.97120 0.92964 0.85538 0.91186 0.95691 0.89419 0.88402 0.76776 0.89616 0.91915 0.91259 0.91730 0.91784 0.91948 0.91955 0.91663 0.91623 0.91350 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.52 37.16 0.35 -2.35 16 2 C -0.10 -2.59 5.59 -26.73 -0.15 -2.74 16 3 C 0.22 5.51 2.30 -68.86 -0.16 5.35 16 4 H 0.00 0.03 7.84 -51.93 -0.41 -0.37 16 5 C -0.51 -13.86 7.28 -34.44 -0.25 -14.11 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.69 -14.49 5.58 -107.96 -0.60 -15.10 16 14 C 0.08 1.45 4.74 -3.83 -0.02 1.43 16 15 C -0.14 -1.89 6.00 -27.88 -0.17 -2.06 16 16 C 0.51 7.37 7.79 -10.98 -0.09 7.29 16 17 O -0.54 -10.00 15.65 5.56 0.09 -9.91 16 18 N -0.74 -7.60 5.08 -53.80 -0.27 -7.87 16 19 C 0.14 1.41 2.45 -67.93 -0.17 1.25 16 20 C -0.13 -1.25 5.49 -26.73 -0.15 -1.39 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 23 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 24 C -0.13 -0.89 5.39 -26.73 -0.14 -1.03 16 25 H 0.06 1.37 7.09 -51.93 -0.37 1.00 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.89 7.72 -51.93 -0.40 0.49 16 28 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 29 H 0.01 0.25 7.48 -51.93 -0.39 -0.14 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.33 6.62 8.25 -39.29 -0.32 6.30 16 32 H 0.07 1.46 7.39 -51.93 -0.38 1.08 16 33 H 0.02 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.40 2.98 8.60 -40.82 -0.35 2.63 16 37 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -30.79 365.97 -9.95 -40.74 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.78 Total: 5.00 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.50 Total: -9.67 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.25 Total: -47.92 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.79 -9.95 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.973 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds