Wall clock time and date at job start Tue Mar 31 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 H 1.08999 * 109.47315 * 306.27616 * 3 2 1 5 5 C 1.50699 * 109.46898 * 186.27781 * 3 2 1 6 6 H 1.08005 * 120.00073 * 242.10470 * 5 3 2 7 7 C 1.37873 * 120.00219 * 61.82689 * 5 3 2 8 8 N 1.31509 * 120.00310 * 197.46662 * 7 5 3 9 9 Si 1.86808 * 119.99787 * 17.47461 * 7 5 3 10 10 H 1.48495 * 109.47102 * 88.37314 * 9 7 5 11 11 H 1.48500 * 109.46781 * 208.37592 * 9 7 5 12 12 H 1.48504 * 109.47001 * 328.37056 * 9 7 5 13 13 N 1.46902 * 109.46834 * 66.28197 * 3 2 1 14 14 C 1.46905 * 110.99617 * 197.95981 * 13 3 2 15 15 H 1.08999 * 109.47249 * 343.45499 * 14 13 3 16 16 C 1.50697 * 109.46988 * 223.45263 * 14 13 3 17 17 O 1.21277 * 120.00246 * 338.58721 * 16 14 13 18 18 N 1.34778 * 119.99904 * 158.57617 * 16 14 13 19 19 C 1.47019 * 125.64748 * 3.77247 * 18 16 14 20 20 C 1.54320 * 107.27678 * 180.96327 * 19 18 16 21 21 C 1.55156 * 102.85933 * 22.52315 * 20 19 18 22 22 C 1.47422 * 125.64936 * 184.07061 * 18 16 14 23 23 C 1.53005 * 109.46827 * 103.45565 * 14 13 3 24 24 C 1.52993 * 109.47249 * 298.52652 * 23 14 13 25 25 C 1.52999 * 109.47094 * 58.53405 * 23 14 13 26 26 H 1.09005 * 109.47377 * 64.21254 * 1 2 3 27 27 H 1.09000 * 109.47078 * 184.21596 * 1 2 3 28 28 H 1.09001 * 109.46889 * 304.21567 * 1 2 3 29 29 H 1.09000 * 109.47102 * 240.00493 * 2 1 3 30 30 H 1.08998 * 109.47118 * 120.00305 * 2 1 3 31 31 H 0.97006 * 120.00473 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99570 * 321.90715 * 13 3 2 33 33 H 1.08997 * 109.88314 * 300.50673 * 19 18 16 34 34 H 1.09001 * 109.88341 * 61.67566 * 19 18 16 35 35 H 1.09007 * 110.92264 * 264.11268 * 20 19 18 36 36 H 1.08993 * 110.59146 * 140.78603 * 20 19 18 37 37 H 1.08999 * 111.00164 * 206.22943 * 21 20 19 38 38 H 1.09005 * 111.03362 * 82.39434 * 21 20 19 39 39 H 1.08995 * 110.36956 * 274.68175 * 22 18 16 40 40 H 1.09000 * 110.36647 * 36.89151 * 22 18 16 41 41 H 1.09001 * 109.46891 * 178.52645 * 23 14 13 42 42 H 1.09003 * 109.47217 * 66.15824 * 24 23 14 43 43 H 1.09005 * 109.47101 * 186.15654 * 24 23 14 44 44 H 1.09000 * 109.47411 * 306.16037 * 24 23 14 45 45 H 1.09005 * 109.46896 * 303.66500 * 25 23 14 46 46 H 1.08995 * 109.47819 * 63.66880 * 25 23 14 47 47 H 1.09005 * 109.46939 * 183.67509 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5879 1.9878 -0.8285 5 6 3.5390 1.4453 -0.1554 6 1 4.1622 1.8535 0.6266 7 6 4.1151 0.9216 -1.2932 8 7 5.3916 0.6054 -1.2981 9 14 3.0825 0.6614 -2.8280 10 1 3.0955 1.8987 -3.6490 11 1 3.6450 -0.4631 -3.6182 12 1 1.6861 0.3416 -2.4368 13 7 1.6779 2.0898 1.2680 14 6 1.7581 3.5523 1.1542 15 1 2.3386 3.8166 0.2704 16 6 2.4267 4.1157 2.3815 17 8 2.4511 3.4714 3.4087 18 7 2.9979 5.3357 2.3377 19 6 2.9739 6.2522 1.1883 20 6 3.7730 7.5103 1.5886 21 6 4.6855 6.9908 2.7308 22 6 3.7555 5.9696 3.4320 23 6 0.3476 4.1322 1.0302 24 6 -0.3179 3.5884 -0.2356 25 6 -0.4784 3.7303 2.2537 26 1 -0.3634 0.4471 -0.9254 27 1 -0.3633 -1.0249 0.0755 28 1 -0.3633 0.5779 0.8498 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.7969 0.2366 -2.0986 32 1 0.7605 1.8006 1.5726 33 1 3.4373 5.7757 0.3245 34 1 1.9453 6.5275 0.9551 35 1 3.1085 8.2942 1.9521 36 1 4.3704 7.8678 0.7500 37 1 4.9607 7.7985 3.4090 38 1 5.5728 6.5004 2.3303 39 1 3.0780 6.4808 4.1160 40 1 4.3432 5.2243 3.9679 41 1 0.4055 5.2191 0.9720 42 1 -0.4750 2.5149 -0.1310 43 1 -1.2778 4.0835 -0.3827 44 1 0.3249 3.7795 -1.0949 45 1 -0.4819 2.6444 2.3490 46 1 -0.0407 4.1721 3.1488 47 1 -1.5013 4.0878 2.1349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:43 Heat of formation + Delta-G solvation = -36.576867 kcal Electronic energy + Delta-G solvation = -24495.393015 eV Core-core repulsion = 21291.972808 eV Total energy + Delta-G solvation = -3203.420207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.93385 -37.88865 -36.44513 -34.57679 -31.99258 -31.40081 -30.72802 -29.01017 -27.36790 -26.94509 -25.77979 -23.14044 -22.50627 -21.11530 -20.09218 -19.71216 -18.59680 -16.84511 -16.60152 -16.25085 -15.53021 -15.15277 -14.67455 -14.33165 -13.86690 -13.62403 -13.46510 -13.19060 -12.99990 -12.82566 -12.73187 -12.35416 -12.10564 -12.02719 -11.87515 -11.79440 -11.68668 -11.33645 -11.19948 -11.03404 -10.89709 -10.83303 -10.78693 -10.55782 -10.32956 -10.11075 -10.04959 -9.48993 -9.13828 -9.07591 -8.43117 -8.27010 -7.26684 -6.05730 -3.96933 3.24103 3.26101 3.35795 3.36890 3.37749 4.43021 4.54136 4.63219 4.86928 5.00133 5.04878 5.07240 5.17874 5.30787 5.32370 5.42144 5.57475 5.66745 5.70417 5.75844 5.80092 5.82845 5.86590 5.89679 5.92346 5.96610 6.02861 6.04149 6.09790 6.16902 6.18146 6.24891 6.44798 6.46601 6.59550 6.63563 6.68614 6.78798 6.98063 7.27637 7.78857 7.86907 8.06015 8.27274 8.79511 8.82457 9.12390 9.61193 11.07626 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.006701 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.055657 B = 4177.341731 C = 5047.226162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C 0.195 3.805 4 H -0.002 1.002 5 C -0.505 4.505 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.890 5.890 9 Si 0.855 3.145 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.252 1.252 13 N -0.653 5.653 14 C 0.089 3.911 15 H 0.100 0.900 16 C 0.545 3.455 17 O -0.523 6.523 18 N -0.627 5.627 19 C 0.099 3.901 20 C -0.131 4.131 21 C -0.134 4.134 22 C 0.107 3.893 23 C -0.114 4.114 24 C -0.153 4.153 25 C -0.147 4.147 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 13.018 3.100 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.087 3.913 4 H 0.015 0.985 5 C -0.543 4.543 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.528 5.528 9 Si 0.682 3.318 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.287 5.287 14 C -0.026 4.026 15 H 0.117 0.883 16 C 0.333 3.667 17 O -0.396 6.396 18 N -0.365 5.365 19 C -0.025 4.025 20 C -0.169 4.169 21 C -0.172 4.172 22 C -0.016 4.016 23 C -0.135 4.135 24 C -0.210 4.210 25 C -0.204 4.204 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.286 12.373 3.825 15.374 hybrid contribution -1.027 0.052 -1.585 1.889 sum -9.312 12.425 2.240 15.688 Atomic orbital electron populations 1.21972 0.98715 1.00415 1.00310 1.22092 0.92388 0.99949 1.02196 1.19610 0.96625 0.89775 0.85306 0.98494 1.20979 0.89310 1.39892 1.04096 0.90557 1.24894 0.94697 0.94645 0.98567 1.70008 1.12169 1.42166 1.28448 0.87381 0.82323 0.77874 0.84244 1.20832 1.21499 1.17602 1.60106 1.32969 1.02352 1.33293 1.21358 0.94347 0.91158 0.95722 0.88253 1.20641 0.77397 0.78208 0.90405 1.90619 1.58414 1.57742 1.32840 1.48575 1.55696 1.16987 1.15241 1.22037 1.00188 0.90152 0.90104 1.22617 0.98375 0.96723 0.99142 1.22788 0.98298 0.98499 0.97658 1.22099 0.93724 0.95383 0.90353 1.21650 0.95258 1.00441 0.96110 1.21985 0.99989 1.01984 0.97036 1.21843 0.98958 1.02188 0.97451 0.93679 0.93676 0.93445 0.91972 0.91709 0.92840 0.84962 0.90955 0.91764 0.90855 0.90131 0.90226 0.90397 0.92224 0.90653 0.91053 0.91779 0.92789 0.92203 0.91959 0.92444 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.73 37.16 0.32 -2.38 16 2 C -0.13 -2.77 4.80 -26.73 -0.13 -2.90 16 3 C 0.20 4.49 0.81 -68.86 -0.06 4.44 16 4 H 0.00 -0.05 5.17 -51.93 -0.27 -0.32 16 5 C -0.50 -14.15 8.71 -34.44 -0.30 -14.45 16 6 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 7 C 0.07 2.10 5.29 -17.82 -0.09 2.01 16 8 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.85 20.66 25.79 -169.99 -4.38 16.28 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.65 5.49 56.52 0.31 -5.34 16 13 N -0.65 -13.85 5.41 -102.16 -0.55 -14.41 16 14 C 0.09 1.66 1.50 -68.86 -0.10 1.55 16 15 H 0.10 2.00 6.58 -51.93 -0.34 1.66 16 16 C 0.55 10.66 6.05 -10.99 -0.07 10.60 16 17 O -0.52 -12.04 16.59 5.56 0.09 -11.94 16 18 N -0.63 -10.01 3.33 -170.53 -0.57 -10.57 16 19 C 0.10 1.23 6.21 -3.07 -0.02 1.21 16 20 C -0.13 -1.24 6.95 -24.90 -0.17 -1.41 16 21 C -0.13 -1.40 7.08 -24.59 -0.17 -1.57 16 22 C 0.11 1.46 6.89 -2.53 -0.02 1.44 16 23 C -0.11 -1.67 2.68 -90.62 -0.24 -1.91 16 24 C -0.15 -2.13 7.87 37.15 0.29 -1.84 16 25 C -0.15 -2.08 8.72 37.16 0.32 -1.75 16 26 H 0.04 0.75 7.81 -51.93 -0.41 0.34 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.75 5.88 -51.93 -0.31 0.45 16 29 H 0.06 1.42 4.72 -51.93 -0.25 1.17 16 30 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.33 6.32 3.36 -39.29 -0.13 6.19 16 33 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 34 H 0.06 0.70 6.76 -51.93 -0.35 0.35 16 35 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 41 H 0.07 0.92 6.64 -51.93 -0.34 0.58 16 42 H 0.06 0.96 4.86 -51.93 -0.25 0.70 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.87 7.78 -51.93 -0.40 0.47 16 45 H 0.06 0.93 6.08 -51.93 -0.32 0.62 16 46 H 0.06 0.88 7.21 -51.93 -0.37 0.51 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -32.91 345.42 -7.88 -40.79 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.02 Total: 7.99 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.43 Total: -6.97 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.35 Total: -51.35 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.38 Total: 16.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.91 -7.88 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.215 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds