Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47569 * 2 1 4 4 H 1.08992 * 109.47225 * 304.52354 * 3 2 1 5 5 C 1.50693 * 109.47260 * 184.51732 * 3 2 1 6 6 H 1.08009 * 120.00074 * 245.41171 * 5 3 2 7 7 C 1.37878 * 120.00365 * 65.41856 * 5 3 2 8 8 N 1.31510 * 120.00330 * 192.31987 * 7 5 3 9 9 Si 1.86799 * 119.99375 * 12.31368 * 7 5 3 10 10 H 1.48503 * 109.47186 * 95.32474 * 9 7 5 11 11 H 1.48512 * 109.47053 * 215.32051 * 9 7 5 12 12 H 1.48500 * 109.47417 * 335.31965 * 9 7 5 13 13 N 1.46903 * 109.47042 * 64.51887 * 3 2 1 14 14 C 1.46894 * 111.00120 * 257.31376 * 13 3 2 15 15 C 1.53001 * 109.47419 * 184.23403 * 14 13 3 16 16 N 1.46495 * 109.47518 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00397 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99764 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00436 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47217 * 300.00543 * 19 17 16 21 21 C 1.53001 * 109.47228 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.47170 * 59.99620 * 21 20 19 23 23 C 1.53001 * 109.47355 * 300.00303 * 22 21 20 24 24 C 1.52995 * 109.46954 * 59.99904 * 23 22 21 25 25 H 1.09004 * 109.46984 * 56.36854 * 1 2 3 26 26 H 1.08999 * 109.47769 * 176.36448 * 1 2 3 27 27 H 1.08996 * 109.47491 * 296.37065 * 1 2 3 28 28 H 1.09002 * 109.47550 * 239.99710 * 2 1 3 29 29 H 1.09005 * 109.47155 * 120.00445 * 2 1 3 30 30 H 0.96998 * 119.99940 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00116 * 21.26349 * 13 3 2 32 32 H 1.09003 * 109.46796 * 304.23425 * 14 13 3 33 33 H 1.09000 * 109.47611 * 64.22966 * 14 13 3 34 34 H 1.09000 * 109.46873 * 300.00240 * 15 14 13 35 35 H 1.09005 * 109.47089 * 59.99718 * 15 14 13 36 36 H 0.97001 * 120.00078 * 0.02562 * 16 15 14 37 37 H 1.09005 * 109.46775 * 60.00370 * 19 17 16 38 38 H 1.08993 * 109.47067 * 300.00021 * 20 19 17 39 39 H 1.09000 * 109.46893 * 59.99876 * 20 19 17 40 40 H 1.09005 * 109.46965 * 299.99950 * 21 20 19 41 41 H 1.08994 * 109.46982 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47306 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46906 * 60.00295 * 22 21 20 44 44 H 1.09000 * 109.46720 * 299.99628 * 23 22 21 45 45 H 1.09000 * 109.46893 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.47338 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.47632 * 60.00283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8466 5 6 3.5428 1.4438 -0.1119 6 1 4.1449 1.8111 0.7061 7 6 4.1492 0.9765 -1.2586 8 7 5.4444 0.7490 -1.2716 9 14 3.1309 0.6663 -2.7935 10 1 3.1940 1.8572 -3.6785 11 1 3.6694 -0.5152 -3.5145 12 1 1.7198 0.4100 -2.4081 13 7 1.6415 2.1027 1.2503 14 6 0.4955 2.9953 1.0322 15 6 0.1770 3.7427 2.3287 16 7 -0.9656 4.6333 2.1110 17 6 -1.4274 5.3964 3.1214 18 8 -0.8967 5.3461 4.2108 19 6 -2.6031 6.3122 2.8976 20 6 -2.2622 7.3207 1.7987 21 6 -3.4561 8.2500 1.5711 22 6 -3.7754 8.9970 2.8676 23 6 -4.1163 7.9885 3.9665 24 6 -2.9224 7.0592 4.1941 25 1 -0.3633 0.5692 -0.8557 26 1 -0.3634 -1.0255 -0.0652 27 1 -0.3634 0.4564 0.9207 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8709 0.4198 -2.0782 31 1 1.4395 1.4241 1.9692 32 1 0.7383 3.7136 0.2490 33 1 -0.3709 2.4071 0.7296 34 1 -0.0658 3.0244 3.1118 35 1 1.0433 4.3310 2.6312 36 1 -1.3903 4.6733 1.2398 37 1 -3.4693 5.7239 2.5949 38 1 -1.3959 7.9089 2.1014 39 1 -2.0351 6.7885 0.8749 40 1 -4.3221 7.6614 1.2681 41 1 -3.2133 8.9681 0.7879 42 1 -4.6256 9.6594 2.7053 43 1 -2.9094 9.5856 3.1705 44 1 -4.9823 7.4000 3.6636 45 1 -4.3434 8.5207 4.8903 46 1 -3.1650 6.3411 4.9773 47 1 -2.0564 7.6477 4.4971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -67.948811 kcal Electronic energy + Delta-G solvation = -22451.852079 eV Core-core repulsion = 19247.071483 eV Total energy + Delta-G solvation = -3204.780597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25520 -37.90600 -37.04259 -34.89382 -32.51336 -31.76597 -31.08814 -30.95766 -28.45237 -26.35789 -23.80200 -22.88693 -22.57971 -21.64877 -20.61670 -19.93267 -19.81363 -17.32166 -16.64658 -16.11819 -15.82957 -15.30488 -15.01170 -14.65799 -14.41060 -14.29483 -14.08155 -13.90788 -13.22837 -12.98228 -12.83688 -12.76120 -12.55677 -12.45884 -11.89765 -11.78296 -11.68408 -11.55242 -11.43638 -11.13983 -10.93643 -10.92499 -10.74376 -10.72331 -10.43830 -10.38888 -9.99024 -9.71547 -9.43500 -9.31587 -9.00344 -8.44264 -7.43371 -6.05897 -3.99655 2.63355 3.15273 3.24980 3.33954 3.36277 4.34226 4.38431 4.41262 4.42868 4.87121 4.88606 4.94094 5.02089 5.09030 5.15424 5.19539 5.20105 5.28921 5.31858 5.47301 5.52218 5.69706 5.70648 5.75883 5.77991 5.79106 5.80643 5.86906 5.91964 5.95611 6.01686 6.14597 6.17611 6.22042 6.41924 6.48873 6.51966 6.69805 6.81377 7.13660 7.48992 7.72725 7.87433 8.21736 8.26837 8.70029 9.10856 9.58999 11.07674 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.002943 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.064199 B = 9510.519922 C = 9699.742165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C 0.195 3.805 4 H 0.024 0.976 5 C -0.499 4.499 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.860 3.140 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.668 5.668 14 C 0.047 3.953 15 C 0.120 3.880 16 N -0.727 5.727 17 C 0.514 3.486 18 O -0.541 6.541 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.099 4.099 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.262 0.738 31 H 0.330 0.670 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.398 0.602 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.518 12.052 5.029 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C 0.086 3.914 4 H 0.041 0.959 5 C -0.537 4.537 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.688 3.312 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.298 5.298 14 C -0.084 4.084 15 C -0.004 4.004 16 N -0.379 5.379 17 C 0.300 3.700 18 O -0.418 6.418 19 C -0.127 4.127 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.137 4.137 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.479 12.439 5.642 24.616 hybrid contribution -1.288 -0.977 -1.607 2.279 sum -21.767 11.461 4.035 24.928 Atomic orbital electron populations 1.21951 0.98538 1.00299 1.00396 1.22637 0.92723 1.01607 1.02164 1.19582 0.96736 0.88155 0.86905 0.95863 1.21010 0.88919 1.41014 1.02773 0.90095 1.24924 0.94720 0.95001 0.98542 1.69943 1.09927 1.45329 1.28274 0.87272 0.81898 0.77905 0.84173 1.20861 1.21396 1.17788 1.60493 1.34090 1.24425 1.10838 1.22194 0.93470 0.96699 0.95989 1.21365 0.88146 0.92751 0.98132 1.46017 1.34334 1.43523 1.14037 1.20645 0.84826 0.80385 0.84161 1.90704 1.59359 1.66973 1.24720 1.21356 0.96706 0.96312 0.98323 1.21544 0.99017 0.97035 0.97378 1.21526 0.97939 0.98437 0.97615 1.21570 1.01437 0.97833 0.95148 1.21562 0.97952 0.97421 0.98779 1.21340 0.98558 0.98301 0.95535 0.93674 0.93897 0.93612 0.91946 0.92209 0.92778 0.85288 0.90978 0.95535 0.91910 0.90469 0.76819 0.88727 0.91187 0.91364 0.91792 0.91608 0.92031 0.91837 0.91994 0.91717 0.91274 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.86 37.15 0.33 -2.21 16 2 C -0.15 -3.10 4.48 -26.74 -0.12 -3.22 16 3 C 0.19 4.36 1.74 -68.87 -0.12 4.24 16 4 H 0.02 0.54 6.21 -51.93 -0.32 0.21 16 5 C -0.50 -13.82 9.29 -34.44 -0.32 -14.14 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 7 C 0.07 1.97 5.37 -17.82 -0.10 1.88 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.86 20.66 25.74 -169.99 -4.38 16.29 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.25 -5.62 5.34 56.52 0.30 -5.32 16 13 N -0.67 -12.94 6.04 -107.96 -0.65 -13.59 16 14 C 0.05 0.73 5.23 -3.83 -0.02 0.71 16 15 C 0.12 1.72 5.97 -4.04 -0.02 1.69 16 16 N -0.73 -8.52 5.45 -60.30 -0.33 -8.85 16 17 C 0.51 6.52 7.15 -10.99 -0.08 6.44 16 18 O -0.54 -9.14 15.98 5.56 0.09 -9.05 16 19 C -0.11 -0.95 2.52 -91.77 -0.23 -1.18 16 20 C -0.11 -0.86 5.10 -26.73 -0.14 -1.00 16 21 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.94 16 23 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 24 C -0.10 -0.91 4.49 -26.73 -0.12 -1.03 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 28 H 0.06 1.37 4.80 -51.93 -0.25 1.12 16 29 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.33 5.97 7.92 -39.29 -0.31 5.65 16 32 H 0.07 1.15 8.00 -51.93 -0.42 0.74 16 33 H 0.03 0.38 6.14 -51.93 -0.32 0.06 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.40 3.60 7.89 -40.82 -0.32 3.28 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -31.79 357.92 -9.16 -40.96 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.65 Total: 5.98 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -1.41 Total: -10.64 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.21 Total: -48.93 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.38 Total: 16.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.79 -9.16 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.991 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds