Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 H 1.08997 * 109.47740 * 54.89591 * 3 2 1 5 5 C 1.50707 * 109.47247 * 174.89933 * 3 2 1 6 6 H 1.07992 * 120.00436 * 119.99678 * 5 3 2 7 7 C 1.37879 * 119.99501 * 299.99638 * 5 3 2 8 8 N 1.31518 * 119.99665 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00291 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47407 * 89.99656 * 9 7 5 11 11 H 1.48497 * 109.47313 * 210.00094 * 9 7 5 12 12 H 1.48504 * 109.46929 * 329.99565 * 9 7 5 13 13 N 1.46900 * 109.47119 * 294.89233 * 3 2 1 14 14 C 1.46901 * 111.00006 * 154.21160 * 13 3 2 15 15 C 1.52994 * 109.47148 * 185.21134 * 14 13 3 16 16 N 1.46502 * 109.47582 * 179.97438 * 15 14 13 17 17 C 1.34767 * 120.00665 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99781 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00445 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.46826 * 300.00193 * 19 17 16 21 21 C 1.53002 * 109.47069 * 179.97438 * 20 19 17 22 22 C 1.53003 * 109.47220 * 59.99704 * 21 20 19 23 23 C 1.52996 * 109.47024 * 300.00333 * 22 21 20 24 24 C 1.52994 * 109.47362 * 179.97438 * 19 17 16 25 25 H 1.09000 * 109.47288 * 60.40353 * 1 2 3 26 26 H 1.09006 * 109.46960 * 180.39845 * 1 2 3 27 27 H 1.09001 * 109.47641 * 300.40098 * 1 2 3 28 28 H 1.09000 * 109.47798 * 239.99960 * 2 1 3 29 29 H 1.08998 * 109.47126 * 119.99323 * 2 1 3 30 30 H 0.97000 * 119.99378 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00135 * 278.16834 * 13 3 2 32 32 H 1.08996 * 109.47166 * 65.21185 * 14 13 3 33 33 H 1.08998 * 109.47001 * 305.20995 * 14 13 3 34 34 H 1.09006 * 109.47555 * 60.00226 * 15 14 13 35 35 H 1.08995 * 109.47334 * 300.00255 * 15 14 13 36 36 H 0.96999 * 119.99564 * 0.02562 * 16 15 14 37 37 H 1.09006 * 109.47113 * 59.99817 * 19 17 16 38 38 H 1.09006 * 109.47488 * 299.99640 * 20 19 17 39 39 H 1.08996 * 109.47786 * 59.99841 * 20 19 17 40 40 H 1.08996 * 109.47247 * 299.99833 * 21 20 19 41 41 H 1.08998 * 109.47041 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47179 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46930 * 59.99957 * 22 21 20 44 44 H 1.08996 * 109.46942 * 299.99564 * 23 22 21 45 45 H 1.09004 * 109.47395 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.47056 * 299.99709 * 24 19 17 47 47 H 1.08996 * 109.47045 * 59.99859 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6039 1.9822 0.8407 5 6 3.5417 1.4446 0.1263 6 1 4.1482 1.8886 -0.6490 7 6 4.1411 0.8794 1.2319 8 7 5.4517 0.8807 1.3419 9 14 3.0920 0.1106 2.5727 10 1 2.8717 -1.3256 2.2665 11 1 3.7870 0.2374 3.8788 12 1 1.7832 0.8091 2.6386 13 7 1.6535 2.0985 -1.2563 14 6 1.5561 3.5539 -1.0820 15 6 1.0277 4.1876 -2.3704 16 7 0.9300 5.6390 -2.1965 17 6 0.4845 6.4105 -3.2078 18 8 0.1641 5.9032 -4.2618 19 6 0.3846 7.9035 -3.0290 20 6 -0.5720 8.2162 -1.8766 21 6 -0.6730 9.7320 -1.6947 22 6 -1.2018 10.3662 -2.9827 23 6 -0.2452 10.0534 -4.1351 24 6 -0.1439 8.5372 -4.3174 25 1 -0.3634 0.5075 -0.8936 26 1 -0.3633 -1.0277 0.0071 27 1 -0.3634 0.5200 0.8863 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.8734 0.4827 2.1195 31 1 2.2960 1.8654 -1.9985 32 1 2.5421 3.9595 -0.8555 33 1 0.8742 3.7767 -0.2614 34 1 0.0416 3.7821 -2.5971 35 1 1.7095 3.9648 -3.1911 36 1 1.1859 6.0447 -1.3534 37 1 1.3707 8.3092 -2.8029 38 1 -1.5582 7.8105 -2.1026 39 1 -0.1951 7.7648 -0.9589 40 1 0.3132 10.1373 -1.4684 41 1 -1.3548 9.9547 -0.8739 42 1 -1.2742 11.4459 -2.8530 43 1 -2.1880 9.9608 -3.2090 44 1 0.7409 10.4587 -3.9089 45 1 -0.6221 10.5048 -5.0529 46 1 0.5379 8.3144 -5.1381 47 1 -1.1299 8.1315 -4.5439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -71.690228 kcal Electronic energy + Delta-G solvation = -22410.803750 eV Core-core repulsion = 19205.860913 eV Total energy + Delta-G solvation = -3204.942837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.20083 -37.83233 -36.75322 -34.85717 -32.53023 -31.86797 -31.19449 -30.95559 -28.23731 -26.18243 -23.75519 -22.83995 -22.51272 -21.56694 -20.57206 -19.90177 -19.74593 -17.28340 -16.96428 -16.06681 -15.60661 -15.34172 -14.90374 -14.52462 -14.37402 -14.27875 -14.04181 -13.67972 -13.23563 -13.04004 -12.79450 -12.58930 -12.50607 -12.42553 -11.86172 -11.72752 -11.56655 -11.48761 -11.40034 -11.22290 -10.90402 -10.88185 -10.68704 -10.61534 -10.38539 -10.30993 -9.83342 -9.65438 -9.48616 -9.27402 -8.93695 -8.63510 -7.47946 -6.18480 -4.20187 2.68764 3.21769 3.22386 3.32325 3.34402 4.31741 4.38497 4.42784 4.46812 4.91461 4.92412 4.99081 5.05990 5.13243 5.17402 5.19678 5.24020 5.33921 5.43121 5.55184 5.62843 5.74317 5.79114 5.82441 5.89783 5.92141 5.96960 5.99977 6.03395 6.05721 6.18338 6.23338 6.26757 6.41844 6.56253 6.65476 6.70030 6.92963 7.04940 7.21705 7.48412 7.56583 7.92472 8.26538 8.30222 8.40805 8.83246 9.44554 10.94355 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026013 B = 0.002970 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.136634 B = 9426.279694 C = 9652.941496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.186 3.814 4 H 0.032 0.968 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.678 5.678 14 C 0.055 3.945 15 C 0.121 3.879 16 N -0.726 5.726 17 C 0.514 3.486 18 O -0.544 6.544 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.099 4.099 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.337 0.663 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 16.768 -5.596 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.308 5.308 14 C -0.075 4.075 15 C -0.003 4.003 16 N -0.378 5.378 17 C 0.300 3.700 18 O -0.421 6.421 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.137 4.137 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.903 16.216 -6.146 21.615 hybrid contribution 0.863 -0.171 1.368 1.626 sum -12.040 16.045 -4.779 20.622 Atomic orbital electron populations 1.21736 0.97511 0.99388 1.01461 1.21819 0.93890 0.99224 1.00490 1.19576 0.94341 0.90694 0.87750 0.94991 1.21735 0.90473 1.39371 1.07188 0.90944 1.25014 0.94793 0.95221 0.97970 1.69920 1.08930 1.44871 1.29707 0.86801 0.80533 0.79956 0.80619 1.20384 1.22593 1.18956 1.60645 1.55223 1.05429 1.09456 1.21912 0.99647 0.90645 0.95329 1.21361 1.01989 0.78279 0.98692 1.46016 1.66892 1.08294 1.16555 1.20634 0.76646 0.89114 0.83575 1.90692 1.48951 1.75422 1.27007 1.21361 1.01483 0.91840 0.98097 1.21537 0.99584 0.96800 0.96986 1.21530 1.01593 0.94757 0.97674 1.21567 0.99239 1.00187 0.94952 1.21573 0.99814 0.95903 0.98462 1.21343 1.02299 0.94290 0.95748 0.91859 0.94780 0.94263 0.92293 0.93682 0.92571 0.84591 0.94276 0.91590 0.91034 0.91820 0.76658 0.88607 0.91320 0.91322 0.91698 0.91653 0.92043 0.91915 0.91930 0.91753 0.91252 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.80 37.16 0.36 -2.24 16 2 C -0.12 -2.49 5.11 -26.73 -0.14 -2.62 16 3 C 0.19 4.17 1.57 -68.86 -0.11 4.07 16 4 H 0.03 0.75 6.76 -51.93 -0.35 0.40 16 5 C -0.55 -14.73 9.05 -34.44 -0.31 -15.04 16 6 H 0.07 2.11 7.97 -52.49 -0.42 1.69 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 9 Si 0.89 21.56 24.41 -169.99 -4.15 17.41 16 10 H -0.28 -6.58 6.83 56.52 0.39 -6.20 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 13 N -0.68 -13.00 5.68 -107.95 -0.61 -13.61 16 14 C 0.06 0.92 5.62 -3.83 -0.02 0.90 16 15 C 0.12 1.79 5.98 -4.04 -0.02 1.76 16 16 N -0.73 -9.07 5.45 -60.30 -0.33 -9.39 16 17 C 0.51 6.80 7.15 -10.99 -0.08 6.72 16 18 O -0.54 -9.35 15.98 5.56 0.09 -9.27 16 19 C -0.11 -1.02 2.52 -91.78 -0.23 -1.25 16 20 C -0.11 -0.89 5.10 -26.73 -0.14 -1.03 16 21 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 22 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 23 C -0.12 -0.87 5.92 -26.71 -0.16 -1.03 16 24 C -0.10 -0.94 4.50 -26.71 -0.12 -1.06 16 25 H 0.06 1.10 7.77 -51.93 -0.40 0.70 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.03 3.21 -51.93 -0.17 0.86 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.34 6.57 8.46 -39.29 -0.33 6.23 16 32 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 4.06 7.89 -40.82 -0.32 3.73 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 47 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -30.77 361.58 -8.90 -39.67 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.74 Total: 6.60 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.38 Total: -10.80 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.17 Total: -49.07 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.77 -8.90 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.019 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds