Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 H 1.09001 * 109.47398 * 305.66505 * 3 2 1 5 5 C 1.50695 * 109.47514 * 185.65908 * 3 2 1 6 6 H 1.08004 * 120.00165 * 240.00461 * 5 3 2 7 7 C 1.37880 * 120.00095 * 59.99650 * 5 3 2 8 8 N 1.31515 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99932 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47290 * 60.00489 * 9 7 5 11 11 H 1.48506 * 109.46672 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47202 * 299.99981 * 9 7 5 13 13 N 1.46907 * 109.47003 * 65.65906 * 3 2 1 14 14 C 1.46903 * 110.99983 * 205.58383 * 13 3 2 15 15 C 1.52996 * 109.46863 * 183.44199 * 14 13 3 16 16 C 1.52999 * 109.47163 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47345 * 179.97438 * 16 15 14 18 18 C 1.47192 * 119.78386 * 269.72923 * 17 16 15 19 19 C 1.53499 * 108.37644 * 108.06303 * 18 17 16 20 20 C 1.51778 * 110.82023 * 86.58781 * 19 18 17 21 21 C 1.51793 * 113.81195 * 292.92473 * 20 19 18 22 22 C 1.53060 * 110.74248 * 66.80942 * 21 20 19 23 23 C 1.33367 * 119.78682 * 89.99891 * 17 16 15 24 24 O 1.21288 * 119.88847 * 0.28496 * 23 17 16 25 25 H 1.08998 * 109.47084 * 55.51201 * 1 2 3 26 26 H 1.08998 * 109.47258 * 175.51093 * 1 2 3 27 27 H 1.08996 * 109.46912 * 295.51515 * 1 2 3 28 28 H 1.09000 * 109.46649 * 240.00261 * 2 1 3 29 29 H 1.08996 * 109.46789 * 120.00480 * 2 1 3 30 30 H 0.96997 * 120.00048 * 179.97438 * 8 7 5 31 31 H 1.00908 * 110.99452 * 329.53296 * 13 3 2 32 32 H 1.08998 * 109.46956 * 63.43884 * 14 13 3 33 33 H 1.08998 * 109.46781 * 303.43660 * 14 13 3 34 34 H 1.09007 * 109.47045 * 299.99523 * 15 14 13 35 35 H 1.08998 * 109.47826 * 59.99575 * 15 14 13 36 36 H 1.08994 * 109.47018 * 300.00128 * 16 15 14 37 37 H 1.09009 * 109.47039 * 59.99994 * 16 15 14 38 38 H 1.09003 * 109.60297 * 227.79421 * 18 17 16 39 39 H 1.09000 * 109.61038 * 348.28709 * 18 17 16 40 40 H 1.08999 * 109.27883 * 326.20480 * 19 18 17 41 41 H 1.09004 * 109.16501 * 206.89563 * 19 18 17 42 42 H 1.08999 * 108.61291 * 171.80576 * 20 19 18 43 43 H 1.08997 * 108.61743 * 54.04608 * 20 19 18 44 44 H 1.09005 * 109.22097 * 306.48377 * 21 20 19 45 45 H 1.08996 * 109.22279 * 187.13841 * 21 20 19 46 46 H 1.09005 * 109.63179 * 155.38383 * 22 21 20 47 47 H 1.08993 * 109.79835 * 34.88442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5963 1.9848 -0.8349 5 6 3.5405 1.4448 -0.1401 6 1 4.1542 1.8863 0.6312 7 6 4.1299 0.8831 -1.2528 8 7 3.3826 0.3457 -2.1922 9 14 5.9898 0.8853 -1.4261 10 1 6.5938 0.1462 -0.2886 11 1 6.3688 0.2269 -2.7021 12 1 6.4853 2.2853 -1.4258 13 7 1.6651 2.0944 1.2619 14 6 1.5710 3.5508 1.0944 15 6 1.2638 4.2007 2.4450 16 6 1.1664 5.7176 2.2707 17 7 0.8716 6.3398 3.5638 18 6 -0.5268 6.5487 3.9729 19 6 -0.8572 5.5528 5.0933 20 6 -0.4712 6.1175 6.4482 21 6 1.0257 6.2806 6.6403 22 6 1.5786 7.3561 5.7020 23 6 1.8721 6.7183 4.3604 24 8 3.0208 6.5507 4.0091 25 1 -0.3633 0.5819 -0.8470 26 1 -0.3634 -1.0245 -0.0804 27 1 -0.3633 0.4427 0.9274 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.7971 -0.0492 -2.9752 31 1 0.8021 1.7153 1.6222 32 1 0.7738 3.7846 0.3889 33 1 2.5175 3.9345 0.7135 34 1 0.3173 3.8169 2.8259 35 1 2.0610 3.9668 3.1506 36 1 2.1130 6.1010 1.8899 37 1 0.3693 5.9518 1.5650 38 1 -0.6528 7.5681 4.3377 39 1 -1.1862 6.3781 3.1219 40 1 -0.3109 4.6251 4.9227 41 1 -1.9271 5.3448 5.0832 42 1 -0.8510 5.4521 7.2234 43 1 -0.9455 7.0916 6.5671 44 1 1.5200 5.3322 6.4299 45 1 1.2258 6.5675 7.6726 46 1 2.4966 7.7697 6.1196 47 1 0.8429 8.1505 5.5768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = -58.676786 kcal Electronic energy + Delta-G solvation = -22965.843954 eV Core-core repulsion = 19761.465422 eV Total energy + Delta-G solvation = -3204.378531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45184 -36.80582 -36.62889 -35.22906 -33.06583 -31.61833 -31.21387 -29.87658 -27.26940 -26.20847 -24.56583 -23.64042 -22.46159 -21.06901 -20.68439 -19.45505 -18.85925 -17.33150 -16.61577 -16.22649 -15.45452 -14.92455 -14.75919 -14.44030 -14.18319 -13.97938 -13.80287 -13.61974 -13.48625 -13.11846 -12.71456 -12.49835 -12.37490 -12.13995 -11.81949 -11.62427 -11.42502 -11.17740 -11.08912 -10.99343 -10.98373 -10.88455 -10.72952 -10.58198 -10.25671 -9.89946 -9.71816 -9.61740 -9.53036 -9.02181 -8.68375 -8.28340 -7.15570 -5.90930 -3.94538 2.67991 2.97544 3.40267 3.43014 3.48279 4.29104 4.46252 4.50779 4.51422 4.56243 4.93331 5.04582 5.09667 5.16297 5.20027 5.24297 5.37941 5.38974 5.50710 5.62465 5.62870 5.68093 5.77850 5.79396 5.89718 5.97959 5.99631 6.05115 6.17552 6.18751 6.26989 6.42435 6.48916 6.70232 6.78030 6.86668 7.11894 7.23884 7.40300 7.54665 7.82804 7.98542 8.22778 8.37368 8.45626 8.83066 9.13808 9.70379 11.14480 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.003665 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.094648 B = 7638.392869 C = 8495.440036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.072 3.928 15 C -0.126 4.126 16 C 0.112 3.888 17 N -0.607 5.607 18 C 0.111 3.889 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.137 4.137 23 C 0.511 3.489 24 O -0.543 6.543 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.314 0.686 32 H 0.012 0.988 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 13.011 14.768 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.059 4.059 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.339 5.339 18 C -0.012 4.012 19 C -0.182 4.182 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.177 4.177 23 C 0.299 3.701 24 O -0.420 6.420 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.112 12.852 14.625 22.417 hybrid contribution 0.004 -0.025 -0.675 0.676 sum -11.109 12.826 13.950 21.966 Atomic orbital electron populations 1.21874 0.99670 0.99619 0.99481 1.21767 0.91169 1.00435 1.03055 1.19143 0.95470 0.89933 0.84283 0.98164 1.21204 0.91341 1.36341 1.04197 0.92107 1.24952 0.98095 0.95662 0.95843 1.69865 1.34725 1.39703 1.09571 0.86608 0.85821 0.78208 0.77049 1.20304 1.21495 1.20376 1.60665 1.36090 1.02082 1.32880 1.21709 1.00228 0.90267 0.93652 1.21907 1.01642 0.93403 0.99537 1.21582 1.02493 0.93556 0.83388 1.47899 1.06307 1.60208 1.19513 1.21929 0.82018 0.99090 0.98160 1.21937 1.01972 0.99828 0.94445 1.21156 0.95739 1.01454 0.97390 1.21222 0.95861 0.99013 0.99080 1.21993 1.03596 0.98990 0.93159 1.20523 0.84925 0.78451 0.86242 1.90759 1.20749 1.55774 1.74705 0.93938 0.94422 0.94683 0.88249 0.94085 0.93106 0.86908 0.96978 0.90739 0.92827 0.91033 0.89625 0.90848 0.90779 0.89616 0.90630 0.90709 0.91715 0.92001 0.91306 0.90803 0.88730 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.67 37.16 0.36 -2.55 16 2 C -0.13 -3.02 5.36 -26.73 -0.14 -3.16 16 3 C 0.22 5.59 2.02 -68.87 -0.14 5.45 16 4 H 0.00 0.02 7.83 -51.93 -0.41 -0.39 16 5 C -0.49 -14.04 8.59 -34.44 -0.30 -14.34 16 6 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 7 C 0.05 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -26.06 11.29 55.43 0.63 -25.43 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.69 -14.98 6.28 -107.95 -0.68 -15.65 16 14 C 0.07 1.38 5.45 -3.82 -0.02 1.36 16 15 C -0.13 -1.97 5.83 -26.73 -0.16 -2.12 16 16 C 0.11 1.51 5.39 -4.04 -0.02 1.49 16 17 N -0.61 -7.05 2.45 -172.91 -0.42 -7.47 16 18 C 0.11 0.85 5.94 -3.41 -0.02 0.83 16 19 C -0.14 -1.04 5.75 -27.09 -0.16 -1.20 16 20 C -0.12 -0.77 5.27 -27.96 -0.15 -0.91 16 21 C -0.11 -0.90 5.67 -27.31 -0.15 -1.05 16 22 C -0.14 -1.24 5.56 -27.50 -0.15 -1.40 16 23 C 0.51 6.86 6.79 -11.26 -0.08 6.79 16 24 O -0.54 -10.02 16.60 5.55 0.09 -9.93 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16 28 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.31 6.20 6.61 -39.29 -0.26 5.94 16 32 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 33 H 0.07 1.62 7.97 -51.93 -0.41 1.20 16 34 H 0.05 0.75 7.89 -51.93 -0.41 0.34 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.35 7.38 -51.93 -0.38 0.96 16 37 H 0.07 0.83 7.84 -51.92 -0.41 0.42 16 38 H 0.07 0.44 6.72 -51.93 -0.35 0.09 16 39 H 0.09 0.57 7.76 -51.93 -0.40 0.17 16 40 H 0.08 0.72 7.80 -51.93 -0.40 0.32 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.31 7.89 -51.93 -0.41 -0.10 16 44 H 0.07 0.69 7.86 -51.93 -0.41 0.29 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 47 H 0.09 0.58 6.78 -51.93 -0.35 0.23 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -32.31 362.31 -9.77 -42.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.61 Total: 3.10 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.22 Total: -9.36 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.47 Total: -48.55 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.31 -9.77 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.598 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds