Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47201 * 2 1 4 4 H 1.08997 * 109.47210 * 54.88686 * 3 2 1 5 5 C 1.50711 * 109.46906 * 174.88326 * 3 2 1 6 6 H 1.08000 * 119.99515 * 120.00454 * 5 3 2 7 7 C 1.37868 * 120.00046 * 300.00192 * 5 3 2 8 8 N 1.31511 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00073 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47607 * 89.99553 * 9 7 5 11 11 H 1.48501 * 109.47188 * 210.00318 * 9 7 5 12 12 H 1.48503 * 109.46612 * 329.99556 * 9 7 5 13 13 N 1.46900 * 109.47371 * 294.88505 * 3 2 1 14 14 C 1.46900 * 111.00367 * 154.15704 * 13 3 2 15 15 C 1.52991 * 109.47500 * 185.50276 * 14 13 3 16 16 C 1.52996 * 109.47275 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47088 * 179.97438 * 16 15 14 18 18 C 1.47196 * 119.78899 * 269.72775 * 17 16 15 19 19 C 1.53501 * 108.37336 * 108.06287 * 18 17 16 20 20 C 1.51769 * 110.81877 * 86.59211 * 19 18 17 21 21 C 1.51790 * 113.81450 * 292.92153 * 20 19 18 22 22 C 1.53067 * 110.74298 * 66.81113 * 21 20 19 23 23 C 1.33374 * 119.78313 * 90.00376 * 17 16 15 24 24 O 1.21282 * 119.89127 * 0.28462 * 23 17 16 25 25 H 1.08995 * 109.47510 * 177.28942 * 1 2 3 26 26 H 1.08991 * 109.47227 * 297.29067 * 1 2 3 27 27 H 1.09006 * 109.47123 * 57.28962 * 1 2 3 28 28 H 1.09004 * 109.46924 * 239.99644 * 2 1 3 29 29 H 1.08998 * 109.46835 * 120.00224 * 2 1 3 30 30 H 0.97000 * 120.00490 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99767 * 278.10899 * 13 3 2 32 32 H 1.09003 * 109.46526 * 305.50623 * 14 13 3 33 33 H 1.09005 * 109.47125 * 65.50095 * 14 13 3 34 34 H 1.09001 * 109.46824 * 300.00020 * 15 14 13 35 35 H 1.09005 * 109.47080 * 59.99791 * 15 14 13 36 36 H 1.09001 * 109.47400 * 299.99900 * 16 15 14 37 37 H 1.09006 * 109.47120 * 60.00551 * 16 15 14 38 38 H 1.08992 * 109.60310 * 227.79548 * 18 17 16 39 39 H 1.08993 * 109.60071 * 348.29231 * 18 17 16 40 40 H 1.08999 * 109.28066 * 326.21155 * 19 18 17 41 41 H 1.09003 * 109.16486 * 206.89582 * 19 18 17 42 42 H 1.09007 * 108.61707 * 171.80556 * 20 19 18 43 43 H 1.09001 * 108.62162 * 54.04603 * 20 19 18 44 44 H 1.09000 * 109.22054 * 306.48595 * 21 20 19 45 45 H 1.08999 * 109.22962 * 187.13810 * 21 20 19 46 46 H 1.09000 * 109.63364 * 155.38433 * 22 21 20 47 47 H 1.08997 * 109.79771 * 34.88576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6038 1.9820 0.8406 5 6 3.5418 1.4442 0.1267 6 1 4.1485 1.8883 -0.6486 7 6 4.1410 0.8790 1.2323 8 7 3.4021 0.3388 2.1766 9 14 6.0023 0.8819 1.3897 10 1 6.4378 2.1152 2.0928 11 1 6.4354 -0.3087 2.1644 12 1 6.6135 0.8413 0.0369 13 7 1.6538 2.0984 -1.2564 14 6 1.5552 3.5537 -1.0819 15 6 1.0203 4.1865 -2.3679 16 6 0.9170 5.7021 -2.1859 17 7 0.4053 6.3081 -3.4177 18 6 1.3454 6.7493 -4.4609 19 6 1.2417 5.7802 -5.6468 20 6 0.1335 6.2030 -6.5936 21 6 -1.2586 6.0820 -6.0007 22 6 -1.4490 7.0805 -4.8563 23 6 -0.9091 6.4616 -3.5841 24 8 -1.6743 6.1039 -2.7139 25 1 -0.3634 -1.0264 -0.0486 26 1 -0.3633 0.4711 0.9132 27 1 -0.3634 0.5554 -0.8647 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8236 -0.0592 2.9543 31 1 2.2970 1.8659 -1.9982 32 1 0.8767 3.7756 -0.2581 33 1 2.5417 3.9606 -0.8597 34 1 1.6988 3.9645 -3.1916 35 1 0.0337 3.7796 -2.5901 36 1 0.2383 5.9238 -1.3623 37 1 1.9034 6.1094 -1.9637 38 1 1.0852 7.7568 -4.7852 39 1 2.3610 6.7405 -4.0654 40 1 1.0322 4.7773 -5.2748 41 1 2.1893 5.7712 -6.1854 42 1 0.1854 5.5832 -7.4889 43 1 0.2996 7.2408 -6.8826 44 1 -1.4003 5.0700 -5.6214 45 1 -1.9978 6.2804 -6.7768 46 1 -2.5097 7.3005 -4.7350 47 1 -0.9068 8.0004 -5.0749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -62.723147 kcal Electronic energy + Delta-G solvation = -22950.746504 eV Core-core repulsion = 19746.192509 eV Total energy + Delta-G solvation = -3204.553995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46102 -36.80523 -36.52856 -35.19477 -33.08066 -31.53578 -31.21246 -29.96079 -27.28356 -26.07888 -24.52444 -23.59883 -22.38444 -21.06101 -20.67469 -19.39136 -18.85989 -17.33987 -16.69780 -16.57837 -15.41836 -14.83028 -14.74523 -14.45455 -14.16319 -13.88724 -13.75933 -13.54484 -13.31868 -13.13795 -12.76316 -12.54976 -12.31156 -12.04653 -11.62685 -11.56519 -11.37582 -11.14855 -11.10036 -11.01138 -10.94255 -10.84597 -10.77939 -10.67090 -10.34089 -10.03783 -9.68364 -9.55053 -9.43895 -9.03433 -8.68273 -8.36185 -7.20391 -5.97798 -4.11217 2.66075 2.97194 3.26410 3.33866 3.36008 4.28624 4.39730 4.46529 4.51582 4.56570 4.93533 5.05080 5.10501 5.17006 5.21465 5.23563 5.30550 5.38648 5.51218 5.63241 5.64779 5.68150 5.78776 5.80101 5.89387 5.99515 6.03438 6.09716 6.31998 6.43970 6.49966 6.57988 6.65171 6.77680 6.79904 7.18617 7.24099 7.39516 7.48619 7.63227 7.80215 8.12658 8.18031 8.20903 8.37285 8.70562 9.02370 9.56234 11.02137 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.003496 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.784272 B = 8007.057003 C = 8552.013511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.689 5.689 14 C 0.071 3.929 15 C -0.126 4.126 16 C 0.112 3.888 17 N -0.606 5.606 18 C 0.111 3.889 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.137 4.137 23 C 0.512 3.488 24 O -0.546 6.546 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.325 0.675 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 13.856 -16.638 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.318 5.318 14 C -0.060 4.060 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.338 5.338 18 C -0.012 4.012 19 C -0.182 4.182 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.178 4.178 23 C 0.300 3.700 24 O -0.423 6.423 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.859 13.465 -15.885 21.633 hybrid contribution 2.183 0.191 0.183 2.199 sum -3.676 13.656 -15.702 21.132 Atomic orbital electron populations 1.21709 0.99006 0.98379 1.00468 1.21485 0.92115 0.99247 1.01537 1.19142 0.92751 0.91283 0.86184 0.95062 1.21866 0.92793 1.38230 1.05502 0.92951 1.24937 0.97878 0.95020 0.95728 1.69881 1.34782 1.38244 1.09369 0.86660 0.86117 0.77535 0.78045 1.20783 1.21146 1.20045 1.60848 1.54784 1.06083 1.10043 1.21647 0.98547 0.90221 0.95569 1.21900 1.02081 0.93536 0.98936 1.21591 0.99449 0.93710 0.86298 1.47908 1.06072 1.60494 1.19350 1.21939 0.93786 0.97528 0.87983 1.21932 0.99164 1.00610 0.96464 1.21159 0.94069 1.01819 0.98718 1.21221 0.97401 0.99627 0.96887 1.21996 1.03005 0.99507 0.93256 1.20515 0.82073 0.78844 0.88616 1.90739 1.56745 1.50759 1.44093 0.95692 0.94531 0.93196 0.95206 0.89231 0.92885 0.85914 0.92113 0.95626 0.92583 0.91361 0.89807 0.90709 0.90782 0.89525 0.90611 0.90658 0.91705 0.92001 0.91339 0.90814 0.88752 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.83 37.16 0.37 -2.63 16 2 C -0.11 -2.59 5.45 -26.73 -0.15 -2.74 16 3 C 0.21 5.41 1.97 -68.86 -0.14 5.27 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.54 -14.76 8.47 -34.44 -0.29 -15.05 16 6 H 0.05 1.40 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.23 11.29 55.43 0.63 -24.61 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.69 -14.74 5.63 -107.95 -0.61 -15.34 16 14 C 0.07 1.34 5.51 -3.83 -0.02 1.32 16 15 C -0.13 -1.93 5.84 -26.74 -0.16 -2.09 16 16 C 0.11 1.50 5.39 -4.04 -0.02 1.47 16 17 N -0.61 -6.98 2.45 -172.92 -0.42 -7.40 16 18 C 0.11 0.87 5.94 -3.40 -0.02 0.85 16 19 C -0.14 -1.07 5.75 -27.10 -0.16 -1.22 16 20 C -0.12 -0.77 5.27 -27.97 -0.15 -0.92 16 21 C -0.11 -0.88 5.67 -27.31 -0.15 -1.03 16 22 C -0.14 -1.22 5.56 -27.49 -0.15 -1.37 16 23 C 0.51 6.71 6.79 -11.25 -0.08 6.63 16 24 O -0.55 -9.75 16.60 5.56 0.09 -9.66 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.05 7.68 -51.93 -0.40 0.66 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.33 6.81 8.46 -39.29 -0.33 6.48 16 32 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 33 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.06 0.81 7.89 -51.93 -0.41 0.40 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.28 7.38 -51.93 -0.38 0.89 16 37 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 38 H 0.07 0.45 6.71 -51.93 -0.35 0.10 16 39 H 0.09 0.61 7.76 -51.93 -0.40 0.21 16 40 H 0.08 0.74 7.80 -51.93 -0.40 0.33 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.06 0.32 7.89 -51.93 -0.41 -0.09 16 44 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 47 H 0.09 0.58 6.78 -51.93 -0.35 0.22 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -30.96 364.49 -9.77 -40.73 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.72 Total: 4.46 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.21 Total: -9.76 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.40 Total: -47.35 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.96 -9.77 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.990 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds