Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47332 * 2 1 4 4 H 1.09006 * 109.46680 * 304.60402 * 3 2 1 5 5 C 1.50701 * 109.47420 * 184.60953 * 3 2 1 6 6 H 1.07999 * 119.99368 * 245.33873 * 5 3 2 7 7 C 1.37873 * 120.00391 * 65.33390 * 5 3 2 8 8 N 1.31512 * 120.00480 * 191.39221 * 7 5 3 9 9 Si 1.86804 * 119.99925 * 11.39323 * 7 5 3 10 10 H 1.48503 * 109.47154 * 91.93688 * 9 7 5 11 11 H 1.48493 * 109.47120 * 211.93746 * 9 7 5 12 12 H 1.48495 * 109.47016 * 331.93909 * 9 7 5 13 13 N 1.46891 * 109.47279 * 64.60204 * 3 2 1 14 14 C 1.46901 * 111.00381 * 203.82654 * 13 3 2 15 15 H 1.09002 * 110.01726 * 319.23928 * 14 13 3 16 16 C 1.54265 * 110.03101 * 80.62381 * 14 13 3 17 17 C 1.54896 * 104.19612 * 142.89915 * 16 14 13 18 18 C 1.54893 * 102.74555 * 322.05676 * 17 16 14 19 19 C 1.53870 * 110.03735 * 197.79510 * 14 13 3 20 20 H 1.08999 * 110.03344 * 121.43050 * 19 14 13 21 21 N 1.46900 * 110.02976 * 359.97438 * 19 14 13 22 22 C 1.47016 * 111.00030 * 294.53629 * 21 19 14 23 23 C 1.53105 * 109.25641 * 177.60769 * 22 21 19 24 24 O 1.43018 * 109.25741 * 56.85079 * 23 22 21 25 25 C 1.43010 * 113.73633 * 301.32823 * 24 23 22 26 26 C 1.47011 * 111.00019 * 170.90469 * 21 19 14 27 27 H 1.08998 * 109.47430 * 304.45815 * 1 2 3 28 28 H 1.09006 * 109.47005 * 64.45624 * 1 2 3 29 29 H 1.09001 * 109.46819 * 184.45246 * 1 2 3 30 30 H 1.09002 * 109.47679 * 239.99482 * 2 1 3 31 31 H 1.09001 * 109.47296 * 119.99627 * 2 1 3 32 32 H 0.97000 * 120.00256 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00192 * 79.87290 * 13 3 2 34 34 H 1.08999 * 110.49066 * 261.57235 * 16 14 13 35 35 H 1.09000 * 110.48834 * 24.08674 * 16 14 13 36 36 H 1.08994 * 110.75457 * 80.37194 * 17 16 14 37 37 H 1.08998 * 110.75796 * 203.74521 * 17 16 14 38 38 H 1.08999 * 110.48591 * 156.61975 * 18 17 16 39 39 H 1.08995 * 110.48841 * 279.26535 * 18 17 16 40 40 H 1.08998 * 109.50746 * 297.54121 * 22 21 19 41 41 H 1.08993 * 109.50462 * 57.67552 * 22 21 19 42 42 H 1.09004 * 109.50585 * 296.91575 * 23 22 21 43 43 H 1.09001 * 109.53902 * 176.80770 * 23 22 21 44 44 H 1.08999 * 109.51197 * 298.73371 * 25 24 23 45 45 H 1.09003 * 109.53931 * 178.62664 * 25 24 23 46 46 H 1.09002 * 109.50913 * 302.32789 * 26 21 19 47 47 H 1.09000 * 109.51085 * 62.41164 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6108 1.9795 -0.8459 5 6 3.5427 1.4440 -0.1142 6 1 4.1458 1.8119 0.7027 7 6 4.1474 0.9757 -1.2613 8 7 5.4455 0.7658 -1.2817 9 14 3.1229 0.6394 -2.7867 10 1 3.0965 1.8526 -3.6427 11 1 3.7203 -0.4887 -3.5453 12 1 1.7375 0.2870 -2.3847 13 7 1.6432 2.1021 1.2510 14 6 1.5926 3.5608 1.0841 15 1 2.4362 3.8968 0.4811 16 6 0.2661 3.9698 0.4112 17 6 -0.1176 5.3003 1.1055 18 6 0.3071 5.0540 2.5746 19 6 1.6187 4.2501 2.4595 20 1 2.4750 4.9214 2.5245 21 7 1.6859 3.2423 3.5262 22 6 0.4619 2.4286 3.5600 23 6 0.5987 1.3556 4.6436 24 8 0.8653 1.9851 5.8998 25 6 2.0507 2.7851 5.9027 26 6 1.9286 3.8726 4.8319 27 1 -0.3634 0.5814 0.8473 28 1 -0.3633 0.4432 -0.9273 29 1 -0.3633 -1.0246 0.0798 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8710 0.4366 -2.0888 33 1 2.2610 1.8460 2.0067 34 1 0.4126 4.1258 -0.6576 35 1 -0.4987 3.2127 0.5840 36 1 0.4388 6.1339 0.6772 37 1 -1.1912 5.4757 1.0380 38 1 0.4836 6.0010 3.0846 39 1 -0.4517 4.4730 3.0987 40 1 -0.3930 3.0663 3.7852 41 1 0.3155 1.9510 2.5913 42 1 1.4204 0.6855 4.3906 43 1 -0.3280 0.7858 4.7114 44 1 2.9146 2.1567 5.6864 45 1 2.1745 3.2498 6.8809 46 1 2.8528 4.4491 4.7917 47 1 1.0976 4.5339 5.0770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -23.964369 kcal Electronic energy + Delta-G solvation = -24805.593634 eV Core-core repulsion = 21602.720346 eV Total energy + Delta-G solvation = -3202.873288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09988 -37.91475 -35.62382 -34.02904 -32.07852 -31.28791 -30.79527 -28.39090 -27.50879 -25.84916 -24.64811 -23.77147 -22.37914 -21.34988 -20.00142 -19.23189 -18.84803 -16.93675 -16.44288 -15.95118 -15.41890 -14.98187 -14.94555 -14.78331 -14.40405 -14.21731 -13.93935 -13.39601 -13.10703 -12.81509 -12.68436 -12.19369 -11.97036 -11.61605 -11.56637 -11.41457 -11.20729 -11.05900 -10.94758 -10.86076 -10.74114 -10.66439 -10.40732 -10.21427 -10.10792 -10.05633 -9.69865 -9.47831 -9.35890 -9.07786 -8.45918 -8.03215 -7.14536 -6.09482 -4.06621 3.27670 3.37825 3.40835 3.94569 4.12313 4.42196 4.82624 4.90482 5.09585 5.10620 5.22553 5.26940 5.29081 5.35271 5.42969 5.50192 5.69132 5.74660 5.79712 5.81878 5.89330 5.95476 5.98410 6.04147 6.08332 6.14619 6.18707 6.19051 6.25409 6.32481 6.50930 6.52524 6.64106 6.76737 6.80090 6.82789 7.08015 7.21663 7.25567 7.31906 7.39458 7.46341 7.68153 8.15442 8.50550 8.64901 8.98920 9.57070 11.03710 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017718 B = 0.006088 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.905429 B = 4598.423279 C = 4952.508326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.183 3.817 4 H 0.025 0.975 5 C -0.543 4.543 6 H 0.071 0.929 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.861 3.139 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.244 1.244 13 N -0.666 5.666 14 C 0.094 3.906 15 H 0.056 0.944 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.158 4.158 19 C 0.083 3.917 20 H 0.078 0.922 21 N -0.517 5.517 22 C -0.007 4.007 23 C 0.063 3.937 24 O -0.395 6.395 25 C 0.066 3.934 26 C 0.017 3.983 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.262 0.738 33 H 0.353 0.647 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.146 0.854 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 6.103 9.198 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.073 3.927 4 H 0.043 0.957 5 C -0.581 4.581 6 H 0.089 0.911 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.689 3.311 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.168 1.168 13 N -0.299 5.299 14 C -0.017 4.017 15 H 0.074 0.926 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.197 4.197 19 C -0.026 4.026 20 H 0.096 0.904 21 N -0.241 5.241 22 C -0.135 4.135 23 C -0.014 4.014 24 O -0.314 6.314 25 C -0.011 4.011 26 C -0.112 4.112 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.175 0.825 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.163 0.837 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.153 5.585 9.050 15.411 hybrid contribution 0.280 0.728 -1.083 1.335 sum -10.873 6.313 7.967 14.885 Atomic orbital electron populations 1.21749 0.98136 0.99189 1.00877 1.21870 0.93190 0.99309 1.00703 1.19519 0.93897 0.90654 0.88585 0.95670 1.21735 0.90660 1.42833 1.02880 0.91094 1.24973 0.94621 0.94355 0.98778 1.69973 1.09986 1.45148 1.28296 0.87279 0.82445 0.77897 0.83503 1.21008 1.21610 1.16847 1.61028 1.55877 1.04393 1.08614 1.21947 0.96503 0.90398 0.92834 0.92610 1.22474 0.97998 0.95995 0.98864 1.22369 1.00111 0.98163 0.95158 1.23062 0.99202 0.99794 0.97597 1.22511 0.96351 0.91772 0.91934 0.90380 1.62210 1.36690 1.22467 1.02691 1.23592 0.90109 0.95709 1.04060 1.22736 1.01324 0.94664 0.82691 1.87913 1.44190 1.65420 1.33828 1.22584 0.88191 0.92228 0.98127 1.22737 1.01106 0.96688 0.90651 0.92224 0.94536 0.95078 0.92950 0.93027 0.92862 0.82486 0.92343 0.90890 0.91910 0.92196 0.92596 0.90703 0.94926 0.83711 0.92155 0.89152 0.92306 0.89290 0.90323 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.85 37.16 0.37 -2.10 16 2 C -0.11 -2.34 4.86 -26.73 -0.13 -2.47 16 3 C 0.18 4.01 1.38 -68.87 -0.10 3.91 16 4 H 0.03 0.58 6.27 -51.93 -0.33 0.26 16 5 C -0.54 -14.54 8.68 -34.44 -0.30 -14.83 16 6 H 0.07 2.11 7.97 -52.49 -0.42 1.69 16 7 C 0.08 2.12 5.38 -17.82 -0.10 2.02 16 8 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 9 Si 0.86 20.88 25.77 -169.99 -4.38 16.49 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.24 -5.52 5.25 56.52 0.30 -5.22 16 13 N -0.67 -12.24 2.36 -99.79 -0.24 -12.47 16 14 C 0.09 1.60 2.81 -66.60 -0.19 1.41 16 15 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 16 C -0.11 -1.72 6.00 -25.07 -0.15 -1.87 16 17 C -0.12 -1.49 6.91 -24.73 -0.17 -1.66 16 18 C -0.16 -1.97 5.47 -25.07 -0.14 -2.11 16 19 C 0.08 1.21 2.95 -66.59 -0.20 1.01 16 20 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 21 N -0.52 -7.38 3.40 -224.99 -0.76 -8.15 16 22 C -0.01 -0.10 4.36 -3.71 -0.02 -0.12 16 23 C 0.06 0.84 7.01 37.21 0.26 1.10 16 24 O -0.39 -5.58 10.83 -35.23 -0.38 -5.96 16 25 C 0.07 0.81 7.01 37.21 0.26 1.07 16 26 C 0.02 0.21 5.46 -3.71 -0.02 0.19 16 27 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.17 4.62 -51.93 -0.24 0.93 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 33 H 0.35 6.96 6.47 -39.29 -0.25 6.71 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.97 5.25 -51.93 -0.27 0.70 16 40 H 0.03 0.45 5.78 -51.93 -0.30 0.15 16 41 H 0.15 2.20 4.91 -51.93 -0.25 1.95 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 47 H 0.04 0.46 7.60 -51.93 -0.39 0.06 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -28.37 339.84 -8.86 -37.24 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.39 Total: 8.47 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.61 Total: -14.44 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.23 Total: -46.92 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.38 Total: -5.96 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.38 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.37 -8.86 -37.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.272 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds