Wall clock time and date at job start Tue Mar 31 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47332 * 2 1 4 4 H 1.09006 * 109.46680 * 304.60402 * 3 2 1 5 5 C 1.50701 * 109.47420 * 184.60953 * 3 2 1 6 6 H 1.07999 * 119.99368 * 245.33873 * 5 3 2 7 7 C 1.37873 * 120.00391 * 65.33390 * 5 3 2 8 8 N 1.31512 * 120.00480 * 191.39221 * 7 5 3 9 9 Si 1.86804 * 119.99925 * 11.39323 * 7 5 3 10 10 H 1.48503 * 109.47154 * 91.93688 * 9 7 5 11 11 H 1.48493 * 109.47120 * 211.93746 * 9 7 5 12 12 H 1.48495 * 109.47016 * 331.93909 * 9 7 5 13 13 N 1.46891 * 109.47279 * 64.60204 * 3 2 1 14 14 C 1.46901 * 111.00381 * 203.82654 * 13 3 2 15 15 H 1.09002 * 110.01726 * 319.23928 * 14 13 3 16 16 C 1.54265 * 110.03101 * 80.62381 * 14 13 3 17 17 C 1.54896 * 104.19612 * 142.89915 * 16 14 13 18 18 C 1.54893 * 102.74555 * 322.05676 * 17 16 14 19 19 C 1.53870 * 110.03735 * 197.79510 * 14 13 3 20 20 H 1.08999 * 110.03344 * 121.43050 * 19 14 13 21 21 N 1.46900 * 110.02976 * 359.97438 * 19 14 13 22 22 C 1.47016 * 111.00030 * 294.53629 * 21 19 14 23 23 C 1.53105 * 109.25641 * 177.60769 * 22 21 19 24 24 O 1.43018 * 109.25741 * 56.85079 * 23 22 21 25 25 C 1.43010 * 113.73633 * 301.32823 * 24 23 22 26 26 C 1.47011 * 111.00019 * 170.90469 * 21 19 14 27 27 H 1.08998 * 109.47430 * 304.45815 * 1 2 3 28 28 H 1.09006 * 109.47005 * 64.45624 * 1 2 3 29 29 H 1.09001 * 109.46819 * 184.45246 * 1 2 3 30 30 H 1.09002 * 109.47679 * 239.99482 * 2 1 3 31 31 H 1.09001 * 109.47296 * 119.99627 * 2 1 3 32 32 H 0.97000 * 120.00256 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00192 * 79.87290 * 13 3 2 34 34 H 1.08999 * 110.49066 * 261.57235 * 16 14 13 35 35 H 1.09000 * 110.48834 * 24.08674 * 16 14 13 36 36 H 1.08994 * 110.75457 * 80.37194 * 17 16 14 37 37 H 1.08998 * 110.75796 * 203.74521 * 17 16 14 38 38 H 1.08999 * 110.48591 * 156.61975 * 18 17 16 39 39 H 1.08995 * 110.48841 * 279.26535 * 18 17 16 40 40 H 1.08998 * 109.50746 * 297.54121 * 22 21 19 41 41 H 1.08993 * 109.50462 * 57.67552 * 22 21 19 42 42 H 1.09004 * 109.50585 * 296.91575 * 23 22 21 43 43 H 1.09001 * 109.53902 * 176.80770 * 23 22 21 44 44 H 1.08999 * 109.51197 * 298.73371 * 25 24 23 45 45 H 1.09003 * 109.53931 * 178.62664 * 25 24 23 46 46 H 1.09002 * 109.50913 * 302.32789 * 26 21 19 47 47 H 1.09000 * 109.51085 * 62.41164 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6108 1.9795 -0.8459 5 6 3.5427 1.4440 -0.1142 6 1 4.1458 1.8119 0.7027 7 6 4.1474 0.9757 -1.2613 8 7 5.4455 0.7658 -1.2817 9 14 3.1229 0.6394 -2.7867 10 1 3.0965 1.8526 -3.6427 11 1 3.7203 -0.4887 -3.5453 12 1 1.7375 0.2870 -2.3847 13 7 1.6432 2.1021 1.2510 14 6 1.5926 3.5608 1.0841 15 1 2.4362 3.8968 0.4811 16 6 0.2661 3.9698 0.4112 17 6 -0.1176 5.3003 1.1055 18 6 0.3071 5.0540 2.5746 19 6 1.6187 4.2501 2.4595 20 1 2.4750 4.9214 2.5245 21 7 1.6859 3.2423 3.5262 22 6 0.4619 2.4286 3.5600 23 6 0.5987 1.3556 4.6436 24 8 0.8653 1.9851 5.8998 25 6 2.0507 2.7851 5.9027 26 6 1.9286 3.8726 4.8319 27 1 -0.3634 0.5814 0.8473 28 1 -0.3633 0.4432 -0.9273 29 1 -0.3633 -1.0246 0.0798 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8710 0.4366 -2.0888 33 1 2.2610 1.8460 2.0067 34 1 0.4126 4.1258 -0.6576 35 1 -0.4987 3.2127 0.5840 36 1 0.4388 6.1339 0.6772 37 1 -1.1912 5.4757 1.0380 38 1 0.4836 6.0010 3.0846 39 1 -0.4517 4.4730 3.0987 40 1 -0.3930 3.0663 3.7852 41 1 0.3155 1.9510 2.5913 42 1 1.4204 0.6855 4.3906 43 1 -0.3280 0.7858 4.7114 44 1 2.9146 2.1567 5.6864 45 1 2.1745 3.2498 6.8809 46 1 2.8528 4.4491 4.7917 47 1 1.0976 4.5339 5.0770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:58 Heat of formation + Delta-G solvation = -42.166632 kcal Electronic energy + Delta-G solvation = -24806.382943 eV Core-core repulsion = 21602.720346 eV Total energy + Delta-G solvation = -3203.662597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.25886 -39.10290 -37.23114 -35.16820 -34.13831 -32.69891 -31.90024 -29.51180 -29.15733 -27.27158 -25.89829 -24.89432 -24.06479 -22.44882 -21.47918 -20.64628 -20.05310 -18.95894 -17.66657 -17.08754 -16.82216 -16.49471 -16.11738 -15.90693 -15.61625 -15.49028 -15.25620 -14.95033 -14.76775 -14.28459 -14.04958 -13.60232 -13.39432 -13.10065 -12.92111 -12.81131 -12.57456 -12.37236 -12.32122 -12.25213 -11.98090 -11.91236 -11.80278 -11.59174 -11.41712 -11.32926 -11.28609 -11.14850 -10.96077 -10.57932 -10.51263 -9.16458 -8.73126 -8.28974 -6.29818 1.32935 1.37187 1.47365 2.35626 2.85894 3.07458 3.09996 3.68408 3.71700 3.84657 4.06153 4.15151 4.24466 4.30606 4.35780 4.43183 4.53236 4.59212 4.64267 4.67421 4.71946 4.73867 4.75941 4.79325 4.88543 4.93100 4.97891 5.02701 5.06375 5.12128 5.17770 5.25511 5.31170 5.33298 5.44076 5.50423 5.57744 5.60289 5.65162 5.81413 6.10505 6.19800 6.24926 6.34484 6.58554 6.78470 7.00258 7.38676 8.87563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017718 B = 0.006088 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.905429 B = 4598.423279 C = 4952.508326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C 0.190 3.810 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.025 0.975 7 C 0.016 3.984 8 N -0.949 5.949 9 Si 0.924 3.076 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.214 1.214 13 N -0.644 5.644 14 C 0.089 3.911 15 H 0.014 0.986 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.145 4.145 19 C 0.087 3.913 20 H 0.070 0.930 21 N -0.535 5.535 22 C 0.001 3.999 23 C 0.064 3.936 24 O -0.404 6.404 25 C 0.064 3.936 26 C 0.020 3.980 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.345 0.655 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.133 0.867 42 H 0.045 0.955 43 H 0.109 0.891 44 H 0.047 0.953 45 H 0.115 0.885 46 H 0.083 0.917 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 6.690 9.707 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.150 4.150 3 C 0.080 3.920 4 H 0.040 0.960 5 C -0.577 4.577 6 H 0.043 0.957 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.749 3.251 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.137 1.137 13 N -0.276 5.276 14 C -0.022 4.022 15 H 0.032 0.968 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.184 4.184 19 C -0.022 4.022 20 H 0.089 0.911 21 N -0.260 5.260 22 C -0.126 4.126 23 C -0.013 4.013 24 O -0.323 6.323 25 C -0.013 4.013 26 C -0.108 4.108 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.165 0.835 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.150 0.850 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.066 0.934 45 H 0.132 0.868 46 H 0.102 0.898 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.352 6.185 9.578 18.329 hybrid contribution 1.379 0.586 -1.132 1.878 sum -12.973 6.771 8.446 16.896 Atomic orbital electron populations 1.21644 0.94773 1.00911 1.01601 1.21772 0.96116 0.97523 0.99638 1.19388 0.90364 0.92128 0.90086 0.96007 1.22073 0.93243 1.41149 1.01212 0.95658 1.25837 0.95624 0.94555 1.02171 1.70128 1.12149 1.47396 1.29226 0.86274 0.82266 0.77490 0.79109 1.20955 1.21840 1.13684 1.61132 1.54577 1.05317 1.06549 1.22034 0.96404 0.89416 0.94385 0.96793 1.22411 0.96481 0.97661 0.98337 1.22342 1.01501 0.96594 0.94494 1.22958 0.97579 1.00019 0.97867 1.22393 0.97592 0.91693 0.90562 0.91126 1.62144 1.37317 1.22962 1.03555 1.23436 0.90071 0.95705 1.03384 1.22762 1.01662 0.94398 0.82486 1.87901 1.44759 1.65660 1.34019 1.22715 0.87268 0.91896 0.99383 1.22749 1.01640 0.96806 0.89608 0.91041 0.94180 0.92972 0.94486 0.93754 0.92966 0.83472 0.93280 0.90504 0.91513 0.90028 0.91018 0.90440 0.94179 0.85007 0.93652 0.87314 0.93428 0.86756 0.89848 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.85 71.98 0.71 -3.47 16 2 C -0.11 -4.54 4.86 30.59 0.15 -4.39 16 3 C 0.19 8.38 1.38 44.17 0.06 8.44 16 4 H 0.02 1.00 6.27 -2.38 -0.01 0.98 16 5 C -0.54 -30.00 8.68 25.60 0.22 -29.78 16 6 H 0.03 1.60 7.97 -2.91 -0.02 1.58 16 7 C 0.02 0.91 5.38 84.65 0.46 1.36 16 8 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.92 43.57 25.77 68.60 1.77 45.34 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.21 -9.00 5.25 99.48 0.52 -8.48 16 13 N -0.64 -23.75 2.36 -469.62 -1.11 -24.86 16 14 C 0.09 3.02 2.81 45.64 0.13 3.15 16 15 H 0.01 0.59 7.69 -2.39 -0.02 0.57 16 16 C -0.11 -3.13 6.00 31.67 0.19 -2.94 16 17 C -0.11 -2.44 6.91 31.89 0.22 -2.22 16 18 C -0.15 -3.23 5.47 31.67 0.17 -3.06 16 19 C 0.09 2.44 2.95 45.64 0.13 2.58 16 20 H 0.07 2.08 8.05 -2.39 -0.02 2.06 16 21 N -0.54 -14.87 3.40 -865.74 -2.94 -17.81 16 22 C 0.00 0.04 4.36 86.32 0.38 0.41 16 23 C 0.06 1.61 7.01 72.02 0.50 2.12 16 24 O -0.40 -10.70 10.83 -148.98 -1.61 -12.32 16 25 C 0.06 1.48 7.01 72.02 0.50 1.98 16 26 C 0.02 0.47 5.46 86.31 0.47 0.94 16 27 H 0.07 2.09 7.31 -2.39 -0.02 2.08 16 28 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.60 4.62 -2.39 -0.01 1.59 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.34 13.93 6.47 -89.69 -0.58 13.35 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 2.13 8.05 -2.39 -0.02 2.11 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.73 5.25 -2.39 -0.01 1.72 16 40 H 0.04 1.00 5.78 -2.39 -0.01 0.98 16 41 H 0.13 3.79 4.91 -2.39 -0.01 3.78 16 42 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 47 H 0.05 1.00 7.60 -2.39 -0.02 0.98 16 Total: -1.00 -63.64 339.84 0.88 -62.76 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.17 Total: 31.18 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.30 Total: -24.86 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -3.75 Total: -102.09 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.61 Total: -12.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.77 Total: 45.34 kcal Total: -63.64 0.88 -62.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.593 kcal (2) G-P(sol) polarization free energy of solvation -63.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds