Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 H 1.09002 * 109.47124 * 306.02149 * 3 2 1 5 5 C 1.50700 * 109.47391 * 186.01696 * 3 2 1 6 6 H 1.08000 * 119.99745 * 240.00182 * 5 3 2 7 7 C 1.37875 * 120.00107 * 60.00160 * 5 3 2 8 8 N 1.31522 * 119.99636 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00163 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47303 * 89.99790 * 9 7 5 11 11 H 1.48502 * 109.46923 * 209.99929 * 9 7 5 12 12 H 1.48496 * 109.46720 * 329.99496 * 9 7 5 13 13 N 1.46903 * 109.46873 * 66.01624 * 3 2 1 14 14 C 1.46903 * 111.00039 * 260.92799 * 13 3 2 15 15 H 1.08991 * 110.01633 * 41.74650 * 14 13 3 16 16 C 1.54262 * 110.03220 * 280.35403 * 14 13 3 17 17 C 1.54885 * 104.19815 * 217.10763 * 16 14 13 18 18 C 1.54888 * 102.75001 * 37.93973 * 17 16 14 19 19 C 1.53879 * 110.03056 * 163.18946 * 14 13 3 20 20 H 1.08993 * 110.02992 * 238.57193 * 19 14 13 21 21 N 1.46900 * 110.03391 * 359.95250 * 19 14 13 22 22 C 1.47021 * 110.99833 * 289.23161 * 21 19 14 23 23 C 1.53098 * 109.25926 * 177.61018 * 22 21 19 24 24 O 1.43015 * 109.25922 * 56.84446 * 23 22 21 25 25 C 1.43024 * 113.73924 * 301.33154 * 24 23 22 26 26 C 1.47007 * 111.00110 * 165.59561 * 21 19 14 27 27 H 1.09008 * 109.46853 * 300.25438 * 1 2 3 28 28 H 1.08992 * 109.47248 * 60.25113 * 1 2 3 29 29 H 1.08997 * 109.47183 * 180.25286 * 1 2 3 30 30 H 1.08995 * 109.47367 * 239.99980 * 2 1 3 31 31 H 1.09005 * 109.47441 * 120.00358 * 2 1 3 32 32 H 0.97002 * 119.99337 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99623 * 136.97250 * 13 3 2 34 34 H 1.09003 * 110.48770 * 335.78522 * 16 14 13 35 35 H 1.09001 * 110.48904 * 98.42650 * 16 14 13 36 36 H 1.08998 * 110.75823 * 156.25629 * 17 16 14 37 37 H 1.08999 * 110.75527 * 279.62842 * 17 16 14 38 38 H 1.08995 * 110.48982 * 203.37994 * 18 17 16 39 39 H 1.09006 * 110.59670 * 80.79456 * 18 17 16 40 40 H 1.09006 * 109.50151 * 297.53796 * 22 21 19 41 41 H 1.08995 * 109.50792 * 57.66569 * 22 21 19 42 42 H 1.09005 * 109.50200 * 296.91360 * 23 22 21 43 43 H 1.08992 * 109.54454 * 176.80014 * 23 22 21 44 44 H 1.09004 * 109.50368 * 298.73722 * 25 24 23 45 45 H 1.08998 * 109.54270 * 178.62890 * 25 24 23 46 46 H 1.09003 * 109.50565 * 302.32357 * 26 21 19 47 47 H 1.09001 * 109.50821 * 62.45377 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 3.5397 1.4451 -0.1489 6 1 4.1578 1.8851 0.6196 7 6 4.1225 0.8858 -1.2663 8 7 3.3695 0.3505 -2.2024 9 14 5.9813 0.8884 -1.4506 10 1 6.5404 -0.3472 -0.8459 11 1 6.3358 0.9383 -2.8918 12 1 6.5454 2.0762 -0.7607 13 7 1.6725 2.0918 1.2655 14 6 0.4698 2.9194 1.1026 15 1 -0.2613 2.3978 0.4851 16 6 0.8411 4.2695 0.4553 17 6 -0.0817 5.2950 1.1594 18 6 -0.1133 4.7800 2.6199 19 6 -0.1370 3.2440 2.4790 20 1 -1.1631 2.8802 2.5298 21 7 0.6682 2.6277 3.5419 22 6 0.5089 1.1661 3.5433 23 6 1.4085 0.5611 4.6243 24 8 1.0819 1.1426 5.8895 25 6 1.2266 2.5650 5.9240 26 6 0.3252 3.1903 4.8560 27 1 -0.3633 0.5178 0.8878 28 1 -0.3633 0.5099 -0.8922 29 1 -0.3633 -1.0276 0.0045 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.7796 -0.0433 -2.9883 33 1 2.4401 2.6368 1.6285 34 1 1.8883 4.5072 0.6424 35 1 0.6395 4.2474 -0.6157 36 1 0.3465 6.2962 1.1121 37 1 -1.0803 5.2797 0.7228 38 1 -1.0113 5.1303 3.1286 39 1 0.7786 5.0999 3.1587 40 1 -0.5308 0.9136 3.7517 41 1 0.7925 0.7682 2.5690 42 1 2.4521 0.7681 4.3871 43 1 1.2519 -0.5166 4.6678 44 1 2.2650 2.8302 5.7245 45 1 0.9383 2.9371 6.9071 46 1 0.4749 4.2699 4.8401 47 1 -0.7174 2.9701 5.0854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = -36.812526 kcal Electronic energy + Delta-G solvation = -24704.529061 eV Core-core repulsion = 21501.098635 eV Total energy + Delta-G solvation = -3203.430426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.74382 -37.94172 -35.42821 -34.11271 -32.16102 -30.87158 -30.41561 -28.31202 -27.53169 -25.58745 -24.47306 -23.64757 -22.58740 -20.41344 -20.19137 -19.44039 -18.91855 -16.72956 -16.34168 -15.73324 -15.42504 -14.84232 -14.78542 -14.57588 -14.41139 -13.95247 -13.76518 -13.24121 -13.01147 -12.63398 -12.41452 -12.02653 -11.97870 -11.56120 -11.31595 -11.21796 -11.10707 -11.00006 -10.91970 -10.73064 -10.70166 -10.63303 -10.39794 -10.29863 -10.14465 -9.99214 -9.65242 -9.38453 -9.26550 -8.79227 -8.40466 -7.89239 -6.96639 -6.00511 -4.07316 3.29724 3.36728 3.39492 4.04931 4.20665 4.41707 4.83590 4.93782 5.16917 5.19992 5.29685 5.33368 5.39326 5.49413 5.54211 5.65078 5.70945 5.77103 5.87380 5.90661 5.93085 5.94113 6.01565 6.09478 6.18654 6.23332 6.33210 6.34083 6.37820 6.45469 6.57081 6.58991 6.72121 6.77522 7.04683 7.16854 7.36133 7.42427 7.46718 7.58172 7.67300 7.81361 8.00703 8.32623 8.49575 8.78701 9.08873 9.58854 11.04101 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.006019 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.147210 B = 4650.717488 C = 5223.572347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.007 0.993 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.663 5.663 14 C 0.092 3.908 15 H 0.075 0.925 16 C -0.146 4.146 17 C -0.121 4.121 18 C -0.120 4.120 19 C 0.089 3.911 20 H 0.034 0.966 21 N -0.503 5.503 22 C 0.016 3.984 23 C 0.066 3.934 24 O -0.397 6.397 25 C 0.067 3.933 26 C 0.011 3.989 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.027 0.973 30 H 0.088 0.912 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.016 0.984 41 H 0.139 0.861 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 6.106 10.277 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.025 0.975 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.293 5.293 14 C -0.020 4.020 15 H 0.093 0.907 16 C -0.186 4.186 17 C -0.160 4.160 18 C -0.158 4.158 19 C -0.020 4.020 20 H 0.052 0.948 21 N -0.228 5.228 22 C -0.112 4.112 23 C -0.011 4.011 24 O -0.316 6.316 25 C -0.010 4.010 26 C -0.117 4.117 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.157 0.843 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.162 5.433 10.392 13.741 hybrid contribution 0.479 0.724 -0.805 1.184 sum -6.683 6.157 9.587 13.209 Atomic orbital electron populations 1.21913 0.99946 0.98754 0.99735 1.21559 0.91134 0.99955 1.01785 1.19117 0.94096 0.90939 0.85128 0.97546 1.21425 0.91732 1.37986 1.04651 0.92430 1.24901 0.97848 0.95270 0.95811 1.69891 1.34606 1.38877 1.09330 0.86612 0.86005 0.78398 0.77038 1.20723 1.21425 1.20049 1.60680 1.05938 1.32826 1.29856 1.22268 0.95289 0.91918 0.92542 0.90663 1.23093 0.99678 0.96103 0.99718 1.22394 0.99677 0.98600 0.95319 1.22507 1.01294 0.94783 0.97205 1.22344 0.93907 0.93291 0.92473 0.94778 1.62081 1.54572 1.04867 1.01236 1.23153 0.96576 0.87761 1.03688 1.22690 0.99210 0.97077 0.82127 1.87907 1.89480 1.20151 1.34024 1.22554 0.99137 0.81321 0.97962 1.22838 0.97536 1.00201 0.91150 0.93753 0.94549 0.95371 0.89367 0.94577 0.93040 0.84084 0.91216 0.92106 0.92081 0.92081 0.92644 0.90631 0.96556 0.84345 0.91911 0.89252 0.92516 0.89549 0.90109 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.69 37.16 0.32 -2.53 16 2 C -0.11 -2.42 5.05 -26.73 -0.13 -2.55 16 3 C 0.21 5.00 2.01 -68.86 -0.14 4.86 16 4 H 0.01 0.18 7.40 -51.93 -0.38 -0.21 16 5 C -0.52 -13.52 8.59 -34.44 -0.30 -13.82 16 6 H 0.06 1.50 7.43 -52.49 -0.39 1.11 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.67 11.29 55.43 0.63 -24.05 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.66 -12.71 2.52 -99.78 -0.25 -12.96 16 14 C 0.09 1.54 2.07 -66.59 -0.14 1.40 16 15 H 0.08 1.36 5.94 -51.93 -0.31 1.05 16 16 C -0.15 -2.34 6.03 -25.08 -0.15 -2.49 16 17 C -0.12 -1.55 6.91 -24.74 -0.17 -1.72 16 18 C -0.12 -1.50 5.12 -25.07 -0.13 -1.63 16 19 C 0.09 1.30 2.70 -66.59 -0.18 1.12 16 20 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 21 N -0.50 -7.43 3.89 -224.99 -0.87 -8.31 16 22 C 0.02 0.25 5.13 -3.71 -0.02 0.23 16 23 C 0.07 0.99 7.01 37.21 0.26 1.25 16 24 O -0.40 -6.01 10.83 -35.23 -0.38 -6.39 16 25 C 0.07 0.85 7.01 37.21 0.26 1.11 16 26 C 0.01 0.14 5.22 -3.71 -0.02 0.13 16 27 H 0.04 0.81 5.10 -51.92 -0.26 0.54 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 31 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.34 6.90 7.43 -39.29 -0.29 6.61 16 34 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.96 6.97 -51.93 -0.36 0.60 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.14 2.47 3.96 -51.93 -0.21 2.26 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -26.41 342.45 -9.65 -36.06 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -8.28 Total: 7.61 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.63 Total: -13.04 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.50 Total: -45.31 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.38 Total: -6.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.41 -9.65 -36.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.752 kcal (2) G-P(sol) polarization free energy of solvation -26.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds