Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46943 * 2 1 4 4 H 1.08994 * 109.47385 * 305.63242 * 3 2 1 5 5 C 1.50704 * 109.46765 * 185.62995 * 3 2 1 6 6 H 1.07996 * 119.99712 * 239.99530 * 5 3 2 7 7 C 1.37877 * 119.99701 * 60.00371 * 5 3 2 8 8 N 1.31510 * 120.00203 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99933 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46732 * 59.99958 * 9 7 5 11 11 H 1.48496 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46919 * 300.00023 * 9 7 5 13 13 N 1.46899 * 109.47031 * 65.63393 * 3 2 1 14 14 C 1.46900 * 110.99788 * 205.75625 * 13 3 2 15 15 H 1.08994 * 110.43686 * 35.49359 * 14 13 3 16 16 C 1.54888 * 110.48787 * 272.95173 * 14 13 3 17 17 C 1.54895 * 102.75061 * 203.38050 * 16 14 13 18 18 C 1.54267 * 104.19193 * 37.94106 * 17 16 14 19 19 C 1.54080 * 106.62349 * 336.28207 * 18 17 16 20 20 H 1.08997 * 110.00684 * 119.38420 * 19 18 17 21 21 N 1.46901 * 110.15672 * 240.88133 * 19 18 17 22 22 C 1.47013 * 111.00403 * 55.75435 * 21 19 18 23 23 C 1.53096 * 109.26002 * 177.61012 * 22 21 19 24 24 O 1.43014 * 109.26340 * 56.84278 * 23 22 21 25 25 C 1.43020 * 113.73860 * 301.33533 * 24 23 22 26 26 C 1.47015 * 111.00225 * 292.11504 * 21 19 18 27 27 H 1.09004 * 109.47334 * 173.86509 * 1 2 3 28 28 H 1.08998 * 109.47727 * 293.86885 * 1 2 3 29 29 H 1.09003 * 109.47215 * 53.87329 * 1 2 3 30 30 H 1.09004 * 109.46608 * 119.99715 * 2 1 3 31 31 H 1.08998 * 109.47814 * 239.99672 * 2 1 3 32 32 H 0.97006 * 120.00051 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00282 * 329.70766 * 13 3 2 34 34 H 1.09005 * 110.75772 * 321.69738 * 16 14 13 35 35 H 1.08997 * 110.75960 * 84.87829 * 16 14 13 36 36 H 1.08996 * 110.48562 * 156.62110 * 17 16 14 37 37 H 1.09002 * 110.47952 * 279.13100 * 17 16 14 38 38 H 1.08997 * 110.02876 * 95.68008 * 18 17 16 39 39 H 1.09005 * 110.02590 * 217.05432 * 18 17 16 40 40 H 1.09006 * 109.50004 * 297.54097 * 22 21 19 41 41 H 1.08996 * 109.51027 * 57.66852 * 22 21 19 42 42 H 1.09006 * 109.50270 * 296.91021 * 23 22 21 43 43 H 1.08997 * 109.50797 * 176.78209 * 23 22 21 44 44 H 1.09002 * 109.50163 * 298.72830 * 25 24 23 45 45 H 1.08999 * 109.50764 * 178.60206 * 25 24 23 46 46 H 1.09005 * 109.50285 * 302.32777 * 26 21 19 47 47 H 1.08995 * 109.50465 * 62.45844 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1394 6 1 4.1538 1.8866 0.6320 7 6 4.1303 0.8830 -1.2518 8 7 3.3835 0.3447 -2.1910 9 14 5.9903 0.8863 -1.4250 10 1 6.5946 0.1481 -0.2870 11 1 6.3699 0.2265 -2.7000 12 1 6.4848 2.2866 -1.4253 13 7 1.6644 2.0946 1.2616 14 6 1.5663 3.5506 1.0928 15 1 1.1742 3.7937 0.1053 16 6 2.9490 4.2154 1.3057 17 6 2.5740 5.6668 1.6959 18 6 1.3188 5.5088 2.5788 19 6 0.6753 4.1629 2.1932 20 1 0.6449 3.5023 3.0597 21 7 -0.6830 4.3805 1.6777 22 6 -0.6735 5.3217 0.5484 23 6 -2.0968 5.4732 0.0053 24 8 -2.9613 5.9024 1.0606 25 6 -2.9952 5.0087 2.1767 26 6 -1.5810 4.8526 2.7417 27 1 -0.3634 -1.0218 -0.1098 28 1 -0.3634 0.4158 0.9397 29 1 -0.3634 0.6059 -0.8301 30 1 1.8932 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.7984 -0.0502 -2.9738 33 1 0.8029 1.7137 1.6231 34 1 3.4925 3.7262 2.1140 35 1 3.5318 4.1983 0.3848 36 1 3.3822 6.1307 2.2613 37 1 2.3458 6.2540 0.8064 38 1 1.6014 5.5013 3.6315 39 1 0.6214 6.3239 2.3855 40 1 -0.3076 6.2914 0.8860 41 1 -0.0225 4.9400 -0.2381 42 1 -2.4428 4.5145 -0.3813 43 1 -2.1042 6.2131 -0.7950 44 1 -3.3674 4.0365 1.8531 45 1 -3.6524 5.4127 2.9467 46 1 -1.5924 4.1283 3.5562 47 1 -1.2296 5.8147 3.1142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -43.109106 kcal Electronic energy + Delta-G solvation = -24277.187206 eV Core-core repulsion = 21073.483740 eV Total energy + Delta-G solvation = -3203.703466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10917 -37.97594 -35.66931 -34.03119 -32.04181 -31.20352 -30.66605 -28.49735 -27.02900 -26.00166 -24.59363 -24.07484 -22.54623 -21.12595 -19.94128 -19.40661 -18.85966 -16.69831 -16.21656 -16.13665 -15.46911 -15.16244 -15.08227 -14.65771 -14.52663 -14.14515 -13.69416 -13.31536 -13.19620 -12.83550 -12.56660 -12.36238 -11.92441 -11.61582 -11.55173 -11.41809 -11.35998 -11.06971 -10.83504 -10.73031 -10.66792 -10.58391 -10.46888 -10.23254 -10.12238 -9.83725 -9.69725 -9.56837 -9.38660 -8.95487 -8.28317 -8.19435 -7.14578 -5.91080 -3.94190 3.35868 3.40473 3.43553 3.74687 3.91279 4.48394 4.79060 4.87209 4.94234 5.05947 5.10703 5.13714 5.21284 5.31214 5.36575 5.50782 5.51885 5.58335 5.73190 5.75296 5.82949 5.86446 5.92810 6.01814 6.10461 6.11246 6.23876 6.25276 6.34633 6.35601 6.43592 6.50187 6.90228 6.92640 6.96058 7.03014 7.13292 7.15248 7.19155 7.29267 7.59781 7.85234 7.99041 8.41791 8.47926 8.85795 9.13642 9.70151 11.14276 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.005153 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.909438 B = 5432.034407 C = 6098.927620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.222 3.778 4 H 0.000 1.000 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.107 3.893 15 H 0.046 0.954 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.152 4.152 19 C 0.075 3.925 20 H 0.090 0.910 21 N -0.526 5.526 22 C 0.011 3.989 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.064 3.936 26 C 0.017 3.983 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.258 0.742 33 H 0.321 0.679 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 9.615 7.615 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.018 0.982 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.004 4.004 15 H 0.064 0.936 16 C -0.142 4.142 17 C -0.163 4.163 18 C -0.191 4.191 19 C -0.033 4.033 20 H 0.108 0.892 21 N -0.250 5.250 22 C -0.117 4.117 23 C -0.013 4.013 24 O -0.308 6.308 25 C -0.013 4.013 26 C -0.111 4.111 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.150 9.237 7.487 15.003 hybrid contribution 0.713 0.524 -0.335 0.947 sum -8.437 9.761 7.152 14.751 Atomic orbital electron populations 1.21848 0.99529 0.99409 0.99666 1.21767 0.91270 1.00533 1.02850 1.19171 0.95286 0.89843 0.84258 0.98238 1.21219 0.91348 1.36010 1.04012 0.91979 1.24950 0.97747 0.95868 0.96037 1.69866 1.34591 1.39728 1.09606 0.86677 0.86240 0.78055 0.77074 1.20408 1.21579 1.20519 1.60823 1.36341 1.01316 1.32478 1.22254 0.93171 0.89860 0.95163 0.93594 1.22481 0.97314 0.92097 1.02302 1.22355 0.96626 0.98668 0.98683 1.22764 0.98082 0.98203 1.00067 1.22726 0.86366 0.95637 0.98601 0.89193 1.62446 1.09432 1.45314 1.07815 1.22873 0.98076 0.95344 0.95440 1.22684 0.88620 1.00522 0.89488 1.87946 1.65959 1.48433 1.28481 1.22644 0.95651 0.94262 0.88731 1.22754 0.93846 0.99632 0.94917 0.94689 0.94489 0.94003 0.94250 0.88423 0.93176 0.86119 0.90952 0.90823 0.92262 0.92411 0.91981 0.92196 0.93639 0.88897 0.92247 0.88691 0.92331 0.88875 0.89843 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.64 37.16 0.36 -2.54 16 2 C -0.13 -2.96 5.36 -26.73 -0.14 -3.10 16 3 C 0.22 5.40 2.02 -68.86 -0.14 5.26 16 4 H 0.00 0.00 7.45 -51.93 -0.39 -0.39 16 5 C -0.49 -13.05 7.87 -34.44 -0.27 -13.32 16 6 H 0.06 1.68 7.18 -52.49 -0.38 1.30 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.40 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -13.97 6.14 -99.22 -0.61 -14.58 16 14 C 0.11 1.92 2.65 -66.06 -0.17 1.74 16 15 H 0.05 0.92 5.12 -51.93 -0.27 0.65 16 16 C -0.10 -1.84 5.28 -24.74 -0.13 -1.97 16 17 C -0.13 -1.77 6.83 -25.07 -0.17 -1.94 16 18 C -0.15 -2.00 5.41 -25.50 -0.14 -2.14 16 19 C 0.08 1.10 2.48 -66.49 -0.16 0.94 16 20 H 0.09 1.36 7.95 -51.93 -0.41 0.95 16 21 N -0.53 -7.19 4.73 -224.87 -1.06 -8.25 16 22 C 0.01 0.14 4.99 -3.71 -0.02 0.12 16 23 C 0.06 0.78 7.01 37.21 0.26 1.04 16 24 O -0.39 -5.01 10.83 -35.23 -0.38 -5.39 16 25 C 0.06 0.70 7.01 37.21 0.26 0.96 16 26 C 0.02 0.19 5.39 -3.71 -0.02 0.17 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.66 6.67 -51.93 -0.35 0.32 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.32 6.27 6.27 -39.29 -0.25 6.02 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.76 5.12 -51.93 -0.27 0.50 16 40 H 0.05 0.60 6.18 -51.93 -0.32 0.28 16 41 H 0.09 1.36 5.96 -51.93 -0.31 1.05 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 47 H 0.04 0.48 6.91 -51.93 -0.36 0.12 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -27.88 345.67 -10.04 -37.92 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.21 Total: 6.91 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.59 Total: -13.39 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -1.05 Total: -47.61 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.38 Total: -5.39 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.88 -10.04 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.193 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds